Wall clock time and date at job start Mon Mar 30 2020 02:28:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30843 * 125.89635 * 2 1 4 4 N 1.40090 * 108.20297 * 180.02562 * 3 2 1 5 5 C 1.46497 * 126.03881 * 179.97438 * 4 3 2 6 6 C 1.34953 * 107.92274 * 359.75563 * 4 3 2 7 7 C 1.50703 * 126.12589 * 180.23126 * 6 4 3 8 8 C 1.35313 * 107.74621 * 0.39039 * 6 4 3 9 9 C 1.50702 * 126.03904 * 179.87122 * 8 6 4 10 10 H 1.09003 * 110.72398 * 343.07216 * 9 8 6 11 11 C 1.54937 * 110.66744 * 106.16687 * 9 8 6 12 12 C 1.54599 * 103.08133 * 155.94001 * 11 9 8 13 13 C 1.53997 * 105.13815 * 337.95045 * 12 11 9 14 14 N 1.47896 * 107.05754 * 358.77976 * 13 12 11 15 15 C 1.46897 * 110.99782 * 145.84347 * 14 13 12 16 16 H 1.09006 * 109.47430 * 175.12583 * 15 14 13 17 17 C 1.53006 * 109.47418 * 55.12430 * 15 14 13 18 18 C 1.50700 * 109.47344 * 295.12156 * 15 14 13 19 19 H 1.07999 * 119.99591 * 0.02562 * 18 15 14 20 20 C 1.37877 * 120.00355 * 180.02562 * 18 15 14 21 21 N 1.31512 * 120.00033 * 0.02562 * 20 18 15 22 22 Si 1.86799 * 120.00146 * 180.02562 * 20 18 15 23 23 H 1.48504 * 109.46976 * 0.02562 * 22 20 18 24 24 H 1.48498 * 109.47266 * 119.99884 * 22 20 18 25 25 H 1.48497 * 109.47272 * 240.00409 * 22 20 18 26 26 H 1.08995 * 109.47289 * 269.98231 * 1 2 3 27 27 H 1.09011 * 109.46808 * 29.97881 * 1 2 3 28 28 H 1.08992 * 109.47195 * 149.97592 * 1 2 3 29 29 H 1.09000 * 109.46807 * 89.97637 * 5 4 3 30 30 H 1.09000 * 109.47105 * 209.98075 * 5 4 3 31 31 H 1.08998 * 109.46777 * 329.97623 * 5 4 3 32 32 H 1.08995 * 109.47334 * 270.18330 * 7 6 4 33 33 H 1.09000 * 109.46675 * 30.18917 * 7 6 4 34 34 H 1.08997 * 109.46689 * 150.17790 * 7 6 4 35 35 H 1.09002 * 110.72438 * 37.49058 * 11 9 8 36 36 H 1.08997 * 110.71973 * 274.38401 * 11 9 8 37 37 H 1.08999 * 110.30781 * 96.87090 * 12 11 9 38 38 H 1.09002 * 110.30706 * 219.03844 * 12 11 9 39 39 H 1.09008 * 109.91110 * 118.13320 * 13 12 11 40 40 H 1.08999 * 109.91411 * 239.22350 * 13 12 11 41 41 H 1.09000 * 109.46841 * 299.99747 * 17 15 14 42 42 H 1.08993 * 109.47205 * 60.00264 * 17 15 14 43 43 H 1.09001 * 109.47135 * 180.02562 * 17 15 14 44 44 H 0.96998 * 120.00462 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2742 1.0599 0.0000 4 7 3.6088 0.6342 -0.0006 5 6 4.7899 1.5008 -0.0013 6 6 3.6142 -0.7153 0.0045 7 6 4.8350 -1.5989 0.0108 8 6 2.3271 -1.1330 -0.0005 9 6 1.8599 -2.5657 -0.0003 10 1 2.6688 -3.2353 -0.2924 11 6 1.3004 -2.9582 1.3902 12 6 0.3458 -4.1301 1.0653 13 6 -0.0096 -3.9584 -0.4232 14 7 0.6826 -2.7402 -0.8968 15 6 1.1044 -2.8849 -2.2964 16 1 1.5329 -1.9455 -2.6459 17 6 -0.1064 -3.2454 -3.1595 18 6 2.1377 -3.9771 -2.3993 19 1 2.4494 -4.5107 -1.5136 20 6 2.6850 -4.2953 -3.6242 21 7 2.3058 -3.6452 -4.7027 22 14 3.9652 -5.6496 -3.7517 23 1 4.2162 -6.2220 -2.4046 24 1 3.4687 -6.7164 -4.6576 25 1 5.2281 -5.0875 -4.2943 26 1 -0.3633 -0.0003 1.0276 27 1 -0.3633 0.8903 -0.5136 28 1 -0.3633 -0.8897 -0.5142 29 1 5.0831 1.7162 1.0262 30 1 5.6092 0.9979 -0.5152 31 1 4.5562 2.4330 -0.5156 32 1 5.1337 -1.8132 -1.0153 33 1 5.6489 -1.0904 0.5276 34 1 4.6053 -2.5322 0.5248 35 1 0.7531 -2.1267 1.8345 36 1 2.1032 -3.2864 2.0503 37 1 0.8488 -5.0835 1.2267 38 1 -0.5531 -4.0670 1.6786 39 1 0.3338 -4.8244 -0.9892 40 1 -1.0877 -3.8444 -0.5368 41 1 -0.5348 -4.1849 -2.8102 42 1 -0.8537 -2.4554 -3.0852 43 1 0.2067 -3.3533 -4.1980 44 1 2.6906 -3.8692 -5.5644 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000247441804.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:29 Heat of formation + Delta-G solvation = 78.748724 kcal Electronic energy + Delta-G solvation = -23356.791069 eV Core-core repulsion = 20310.713374 eV Total energy + Delta-G solvation = -3046.077695 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.84524 -38.15085 -33.82818 -33.46339 -31.92521 -31.07896 -29.07556 -28.42724 -27.20276 -25.92028 -25.05975 -24.62710 -21.67434 -20.53936 -19.20342 -18.87494 -18.56200 -16.34551 -15.72657 -15.29070 -15.24213 -14.66581 -14.07092 -13.47299 -13.26684 -13.12255 -12.95326 -12.73718 -12.68995 -12.30238 -12.24242 -12.08597 -11.85989 -11.47893 -11.32158 -11.16865 -11.06223 -10.93186 -10.71846 -10.66807 -10.38912 -10.09491 -10.02898 -9.94566 -9.73551 -9.61193 -9.12494 -8.46036 -8.35599 -7.56690 -7.07493 -5.95459 -4.07317 2.39028 2.98630 3.24404 3.33759 3.35544 3.38684 4.40233 4.82914 5.09839 5.22665 5.29434 5.29721 5.43539 5.46340 5.50701 5.54831 5.62154 5.74240 5.86779 6.00947 6.14948 6.17731 6.20424 6.30026 6.31645 6.42408 6.45988 6.58188 6.73260 6.80885 6.85683 6.96039 6.98596 7.04828 7.11186 7.22060 7.43599 7.56486 7.66861 7.74841 8.04951 8.19761 8.32760 8.39488 8.48497 9.03539 9.58786 11.04552 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.014563 B = 0.007857 C = 0.006501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1922.279050 B = 3562.924847 C = 4305.699987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.105 3.895 3 N -0.319 5.319 4 N -0.386 5.386 5 C 0.109 3.891 6 C 0.080 3.920 7 C -0.087 4.087 8 C -0.192 4.192 9 C 0.143 3.857 10 H 0.076 0.924 11 C -0.115 4.115 12 C -0.129 4.129 13 C 0.040 3.960 14 N -0.507 5.507 15 C 0.202 3.798 16 H 0.039 0.961 17 C -0.133 4.133 18 C -0.534 4.534 19 H 0.058 0.942 20 C 0.068 3.932 21 N -0.885 5.885 22 Si 0.882 3.118 23 H -0.274 1.274 24 H -0.285 1.285 25 H -0.285 1.285 26 H 0.060 0.940 27 H 0.054 0.946 28 H 0.115 0.885 29 H 0.064 0.936 30 H 0.080 0.920 31 H 0.083 0.917 32 H 0.081 0.919 33 H 0.060 0.940 34 H 0.082 0.918 35 H 0.064 0.936 36 H 0.055 0.945 37 H 0.056 0.944 38 H 0.058 0.942 39 H 0.058 0.942 40 H 0.059 0.941 41 H 0.026 0.974 42 H 0.013 0.987 43 H 0.082 0.918 44 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.022 4.078 10.459 11.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.061 4.061 3 N -0.141 5.141 4 N -0.169 5.169 5 C -0.033 4.033 6 C -0.047 4.047 7 C -0.146 4.146 8 C -0.203 4.203 9 C 0.034 3.966 10 H 0.094 0.906 11 C -0.153 4.153 12 C -0.168 4.168 13 C -0.088 4.088 14 N -0.231 5.231 15 C 0.096 3.904 16 H 0.057 0.943 17 C -0.191 4.191 18 C -0.573 4.573 19 H 0.076 0.924 20 C -0.134 4.134 21 N -0.524 5.524 22 Si 0.710 3.290 23 H -0.199 1.199 24 H -0.211 1.211 25 H -0.212 1.212 26 H 0.078 0.922 27 H 0.073 0.927 28 H 0.133 0.867 29 H 0.083 0.917 30 H 0.099 0.901 31 H 0.101 0.899 32 H 0.100 0.900 33 H 0.079 0.921 34 H 0.101 0.899 35 H 0.083 0.917 36 H 0.073 0.927 37 H 0.075 0.925 38 H 0.076 0.924 39 H 0.076 0.924 40 H 0.077 0.923 41 H 0.045 0.955 42 H 0.032 0.968 43 H 0.100 0.900 44 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 1.878 5.908 10.252 11.981 hybrid contribution 1.498 -2.230 -0.393 2.715 sum 3.376 3.678 9.859 11.051 Atomic orbital electron populations 1.20419 0.86836 1.04691 1.01831 1.22128 0.96845 0.89794 0.97299 1.77202 0.86112 1.23006 1.27812 1.48084 1.05272 1.03921 1.59654 1.21635 0.84506 0.94866 1.02286 1.20720 0.97012 0.84263 1.02671 1.20386 0.92611 0.98059 1.03503 1.19481 0.90370 0.95987 1.14459 1.20936 0.94304 0.90357 0.90995 0.90605 1.22491 0.98064 0.97648 0.97137 1.22394 0.98832 0.98007 0.97518 1.22663 0.98538 0.94461 0.93147 1.65030 1.20489 1.32890 1.04677 1.19317 0.92254 0.96168 0.82701 0.94346 1.21820 0.96622 0.97112 1.03524 1.21713 1.22892 1.19319 0.93416 0.92406 1.24894 0.96502 0.96090 0.95950 1.69898 1.42854 1.40925 0.98697 0.86708 0.81832 0.82418 0.78057 1.19875 1.21094 1.21160 0.92169 0.92667 0.86662 0.91715 0.90104 0.89873 0.90018 0.92136 0.89885 0.91709 0.92662 0.92517 0.92365 0.92391 0.92269 0.95503 0.96793 0.89982 0.93110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.35 10.22 36.01 0.37 -0.98 16 2 C 0.11 2.05 7.16 -82.41 -0.59 1.46 16 3 N -0.32 -6.23 12.58 33.67 0.42 -5.81 16 4 N -0.39 -6.67 4.01 -63.89 -0.26 -6.93 16 5 C 0.11 1.30 11.09 59.85 0.66 1.96 16 6 C 0.08 1.42 6.93 -82.26 -0.57 0.85 16 7 C -0.09 -1.27 9.48 36.01 0.34 -0.93 16 8 C -0.19 -3.74 4.99 -105.05 -0.52 -4.26 16 9 C 0.14 2.78 2.16 -66.67 -0.14 2.63 16 10 H 0.08 1.63 4.89 -51.93 -0.25 1.37 16 11 C -0.11 -1.87 6.47 -24.87 -0.16 -2.03 16 12 C -0.13 -2.04 6.93 -25.37 -0.18 -2.21 16 13 C 0.04 0.76 5.02 -2.76 -0.01 0.74 16 14 N -0.51 -10.45 2.63 -217.06 -0.57 -11.02 16 15 C 0.20 4.97 2.43 -68.86 -0.17 4.80 16 16 H 0.04 1.10 8.11 -51.93 -0.42 0.68 16 17 C -0.13 -3.19 8.77 37.16 0.33 -2.87 16 18 C -0.53 -13.83 6.43 -34.44 -0.22 -14.05 16 19 H 0.06 1.49 5.99 -52.49 -0.31 1.18 16 20 C 0.07 1.81 5.30 -17.82 -0.09 1.72 16 21 N -0.89 -24.85 11.32 55.43 0.63 -24.23 16 22 Si 0.88 20.67 29.54 -169.99 -5.02 15.65 16 23 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 24 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 25 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 26 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 27 H 0.05 0.89 8.14 -51.92 -0.42 0.47 16 28 H 0.12 2.12 5.79 -51.93 -0.30 1.82 16 29 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.08 0.81 7.67 -51.93 -0.40 0.41 16 31 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 32 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 33 H 0.06 0.69 7.74 -51.93 -0.40 0.29 16 34 H 0.08 1.18 7.50 -51.93 -0.39 0.79 16 35 H 0.06 1.04 8.05 -51.93 -0.42 0.62 16 36 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.06 1.22 6.17 -51.92 -0.32 0.90 16 40 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 41 H 0.03 0.61 6.77 -51.93 -0.35 0.26 16 42 H 0.01 0.30 8.14 -51.93 -0.42 -0.13 16 43 H 0.08 2.18 6.07 -51.93 -0.32 1.87 16 44 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 LS Contribution 339.28 15.07 5.11 5.11 Total: -1.00 -29.95 339.28 -7.90 -37.84 By element: Atomic # 1 Polarization: 9.79 SS G_CDS: -7.25 Total: 2.54 kcal Atomic # 6 Polarization: -12.20 SS G_CDS: -0.96 Total: -13.16 kcal Atomic # 7 Polarization: -48.20 SS G_CDS: 0.22 Total: -47.98 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.65 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -29.95 -7.90 -37.84 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000247441804.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.591 kcal (2) G-P(sol) polarization free energy of solvation -29.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.842 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds