Wall clock time and date at job start Mon Mar 30 2020 02:28:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30843 * 125.89635 * 2 1 4 4 N 1.40090 * 108.20297 * 180.02562 * 3 2 1 5 5 C 1.46497 * 126.03881 * 179.97438 * 4 3 2 6 6 C 1.34953 * 107.92274 * 359.75563 * 4 3 2 7 7 C 1.50703 * 126.12589 * 180.23126 * 6 4 3 8 8 C 1.35313 * 107.74621 * 0.39039 * 6 4 3 9 9 C 1.50702 * 126.03904 * 179.87122 * 8 6 4 10 10 H 1.09003 * 110.72398 * 343.07216 * 9 8 6 11 11 C 1.54937 * 110.66744 * 106.16687 * 9 8 6 12 12 C 1.54599 * 103.08133 * 155.94001 * 11 9 8 13 13 C 1.53997 * 105.13815 * 337.95045 * 12 11 9 14 14 N 1.47896 * 107.05754 * 358.77976 * 13 12 11 15 15 C 1.46897 * 110.99782 * 145.84347 * 14 13 12 16 16 H 1.09006 * 109.47430 * 175.12583 * 15 14 13 17 17 C 1.53006 * 109.47418 * 55.12430 * 15 14 13 18 18 C 1.50700 * 109.47344 * 295.12156 * 15 14 13 19 19 H 1.07999 * 119.99591 * 0.02562 * 18 15 14 20 20 C 1.37877 * 120.00355 * 180.02562 * 18 15 14 21 21 N 1.31512 * 120.00033 * 0.02562 * 20 18 15 22 22 Si 1.86799 * 120.00146 * 180.02562 * 20 18 15 23 23 H 1.48504 * 109.46976 * 0.02562 * 22 20 18 24 24 H 1.48498 * 109.47266 * 119.99884 * 22 20 18 25 25 H 1.48497 * 109.47272 * 240.00409 * 22 20 18 26 26 H 1.08995 * 109.47289 * 269.98231 * 1 2 3 27 27 H 1.09011 * 109.46808 * 29.97881 * 1 2 3 28 28 H 1.08992 * 109.47195 * 149.97592 * 1 2 3 29 29 H 1.09000 * 109.46807 * 89.97637 * 5 4 3 30 30 H 1.09000 * 109.47105 * 209.98075 * 5 4 3 31 31 H 1.08998 * 109.46777 * 329.97623 * 5 4 3 32 32 H 1.08995 * 109.47334 * 270.18330 * 7 6 4 33 33 H 1.09000 * 109.46675 * 30.18917 * 7 6 4 34 34 H 1.08997 * 109.46689 * 150.17790 * 7 6 4 35 35 H 1.09002 * 110.72438 * 37.49058 * 11 9 8 36 36 H 1.08997 * 110.71973 * 274.38401 * 11 9 8 37 37 H 1.08999 * 110.30781 * 96.87090 * 12 11 9 38 38 H 1.09002 * 110.30706 * 219.03844 * 12 11 9 39 39 H 1.09008 * 109.91110 * 118.13320 * 13 12 11 40 40 H 1.08999 * 109.91411 * 239.22350 * 13 12 11 41 41 H 1.09000 * 109.46841 * 299.99747 * 17 15 14 42 42 H 1.08993 * 109.47205 * 60.00264 * 17 15 14 43 43 H 1.09001 * 109.47135 * 180.02562 * 17 15 14 44 44 H 0.96998 * 120.00462 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2742 1.0599 0.0000 4 7 3.6088 0.6342 -0.0006 5 6 4.7899 1.5008 -0.0013 6 6 3.6142 -0.7153 0.0045 7 6 4.8350 -1.5989 0.0108 8 6 2.3271 -1.1330 -0.0005 9 6 1.8599 -2.5657 -0.0003 10 1 2.6688 -3.2353 -0.2924 11 6 1.3004 -2.9582 1.3902 12 6 0.3458 -4.1301 1.0653 13 6 -0.0096 -3.9584 -0.4232 14 7 0.6826 -2.7402 -0.8968 15 6 1.1044 -2.8849 -2.2964 16 1 1.5329 -1.9455 -2.6459 17 6 -0.1064 -3.2454 -3.1595 18 6 2.1377 -3.9771 -2.3993 19 1 2.4494 -4.5107 -1.5136 20 6 2.6850 -4.2953 -3.6242 21 7 2.3058 -3.6452 -4.7027 22 14 3.9652 -5.6496 -3.7517 23 1 4.2162 -6.2220 -2.4046 24 1 3.4687 -6.7164 -4.6576 25 1 5.2281 -5.0875 -4.2943 26 1 -0.3633 -0.0003 1.0276 27 1 -0.3633 0.8903 -0.5136 28 1 -0.3633 -0.8897 -0.5142 29 1 5.0831 1.7162 1.0262 30 1 5.6092 0.9979 -0.5152 31 1 4.5562 2.4330 -0.5156 32 1 5.1337 -1.8132 -1.0153 33 1 5.6489 -1.0904 0.5276 34 1 4.6053 -2.5322 0.5248 35 1 0.7531 -2.1267 1.8345 36 1 2.1032 -3.2864 2.0503 37 1 0.8488 -5.0835 1.2267 38 1 -0.5531 -4.0670 1.6786 39 1 0.3338 -4.8244 -0.9892 40 1 -1.0877 -3.8444 -0.5368 41 1 -0.5348 -4.1849 -2.8102 42 1 -0.8537 -2.4554 -3.0852 43 1 0.2067 -3.3533 -4.1980 44 1 2.6906 -3.8692 -5.5644 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000247441804.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:28 Heat of formation + Delta-G solvation = 61.915081 kcal Electronic energy + Delta-G solvation = -23357.521031 eV Core-core repulsion = 20310.713374 eV Total energy + Delta-G solvation = -3046.807657 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.21245 -39.72143 -35.60608 -34.82908 -33.31968 -32.84893 -30.32247 -29.80226 -28.91000 -27.40927 -26.94223 -25.88079 -23.33274 -21.98078 -20.80043 -20.26043 -20.07400 -18.17962 -17.30208 -16.82092 -16.49368 -16.29881 -15.70281 -14.88923 -14.77674 -14.46678 -14.39096 -14.19725 -13.94777 -13.86786 -13.58561 -13.33701 -13.22341 -13.03943 -12.91490 -12.72333 -12.61068 -12.60555 -12.44075 -12.06706 -11.99825 -11.78450 -11.71427 -11.62946 -11.42178 -11.10892 -11.02327 -10.43148 -9.80955 -8.95790 -8.81289 -7.97234 -6.18417 1.02354 1.37526 1.41195 1.50291 1.79630 1.94845 2.43307 3.22132 3.52133 3.83243 3.91688 4.12163 4.13462 4.27522 4.39570 4.43263 4.46390 4.62307 4.63248 4.71619 4.77142 4.79563 4.92999 4.96470 4.98012 5.04772 5.07811 5.12743 5.16371 5.22718 5.26593 5.31235 5.42356 5.46198 5.53927 5.58649 5.66378 5.79783 5.99769 6.08931 6.27383 6.31712 6.48106 6.66146 6.96007 7.04956 7.51467 8.98797 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.014563 B = 0.007857 C = 0.006501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1922.279050 B = 3562.924847 C = 4305.699987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.087 3.913 3 N -0.345 5.345 4 N -0.386 5.386 5 C 0.097 3.903 6 C 0.074 3.926 7 C -0.083 4.083 8 C -0.223 4.223 9 C 0.145 3.855 10 H 0.052 0.948 11 C -0.106 4.106 12 C -0.120 4.120 13 C 0.038 3.962 14 N -0.505 5.505 15 C 0.215 3.785 16 H -0.010 1.010 17 C -0.121 4.121 18 C -0.531 4.531 19 H 0.058 0.942 20 C 0.018 3.982 21 N -0.918 5.918 22 Si 0.943 3.057 23 H -0.264 1.264 24 H -0.285 1.285 25 H -0.284 1.284 26 H 0.081 0.919 27 H 0.056 0.944 28 H 0.100 0.900 29 H 0.090 0.910 30 H 0.101 0.899 31 H 0.087 0.913 32 H 0.068 0.932 33 H 0.097 0.903 34 H 0.085 0.915 35 H 0.069 0.931 36 H 0.072 0.928 37 H 0.065 0.935 38 H 0.085 0.915 39 H 0.032 0.968 40 H 0.069 0.931 41 H 0.033 0.967 42 H 0.024 0.976 43 H 0.054 0.946 44 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.870 3.599 12.539 13.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.078 4.078 3 N -0.168 5.168 4 N -0.169 5.169 5 C -0.043 4.043 6 C -0.054 4.054 7 C -0.141 4.141 8 C -0.234 4.234 9 C 0.036 3.964 10 H 0.069 0.931 11 C -0.144 4.144 12 C -0.158 4.158 13 C -0.091 4.091 14 N -0.228 5.228 15 C 0.107 3.893 16 H 0.008 0.992 17 C -0.180 4.180 18 C -0.570 4.570 19 H 0.076 0.924 20 C -0.181 4.181 21 N -0.558 5.558 22 Si 0.769 3.231 23 H -0.188 1.188 24 H -0.212 1.212 25 H -0.211 1.211 26 H 0.099 0.901 27 H 0.075 0.925 28 H 0.119 0.881 29 H 0.109 0.891 30 H 0.120 0.880 31 H 0.106 0.894 32 H 0.087 0.913 33 H 0.115 0.885 34 H 0.104 0.896 35 H 0.088 0.912 36 H 0.091 0.909 37 H 0.083 0.917 38 H 0.104 0.896 39 H 0.051 0.949 40 H 0.087 0.913 41 H 0.053 0.947 42 H 0.043 0.957 43 H 0.073 0.927 44 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 2.728 5.441 12.355 13.773 hybrid contribution 1.265 -2.001 -1.035 2.583 sum 3.993 3.440 11.320 12.487 Atomic orbital electron populations 1.20372 0.85882 1.03974 1.02952 1.22448 0.97809 0.89909 0.97612 1.77112 0.87421 1.23509 1.28766 1.48497 1.05671 1.04372 1.58329 1.22055 0.83254 0.94603 1.04392 1.21213 0.97695 0.85013 1.01485 1.20440 0.92462 0.98046 1.03181 1.19689 0.91393 0.96058 1.16269 1.20886 0.93028 0.90131 0.92347 0.93056 1.22443 0.98610 0.97949 0.95413 1.22355 0.99961 0.98152 0.95289 1.22714 0.98768 0.92448 0.95122 1.64961 1.21190 1.33808 1.02846 1.18955 0.91899 0.93278 0.85140 0.99238 1.21649 0.96742 0.97801 1.01778 1.21907 1.22789 1.19064 0.93270 0.92371 1.25622 0.98480 0.98236 0.95770 1.70044 1.44159 1.42493 0.99072 0.85739 0.79365 0.79703 0.78268 1.18781 1.21172 1.21065 0.90068 0.92469 0.88127 0.89133 0.88031 0.89409 0.91323 0.88459 0.89629 0.91215 0.90888 0.91662 0.89650 0.94918 0.91280 0.94745 0.95737 0.92741 0.93312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.48 10.22 71.24 0.73 -1.75 16 2 C 0.09 3.40 7.16 43.10 0.31 3.71 16 3 N -0.34 -13.37 12.58 -47.39 -0.60 -13.97 16 4 N -0.39 -12.90 4.01 -356.03 -1.43 -14.33 16 5 C 0.10 2.10 11.09 127.77 1.42 3.52 16 6 C 0.07 2.58 6.93 41.40 0.29 2.87 16 7 C -0.08 -2.29 9.48 71.24 0.68 -1.62 16 8 C -0.22 -8.65 4.99 -20.14 -0.10 -8.75 16 9 C 0.15 5.57 2.16 44.42 0.10 5.67 16 10 H 0.05 2.21 4.89 -2.39 -0.01 2.20 16 11 C -0.11 -3.21 6.47 31.80 0.21 -3.01 16 12 C -0.12 -3.45 6.93 31.48 0.22 -3.23 16 13 C 0.04 1.38 5.02 86.45 0.43 1.81 16 14 N -0.50 -20.88 2.63 -840.65 -2.21 -23.09 16 15 C 0.22 10.86 2.43 44.17 0.11 10.97 16 16 H -0.01 -0.62 8.11 -2.38 -0.02 -0.64 16 17 C -0.12 -6.00 8.77 71.98 0.63 -5.37 16 18 C -0.53 -27.93 6.43 25.60 0.16 -27.77 16 19 H 0.06 3.01 5.99 -2.91 -0.02 3.00 16 20 C 0.02 0.97 5.30 84.65 0.45 1.42 16 21 N -0.92 -52.97 11.32 21.45 0.24 -52.73 16 22 Si 0.94 42.68 29.54 68.60 2.03 44.71 16 23 H -0.26 -11.39 7.11 99.48 0.71 -10.68 16 24 H -0.29 -12.90 7.11 99.48 0.71 -12.19 16 25 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 26 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 27 H 0.06 1.86 8.14 -2.38 -0.02 1.84 16 28 H 0.10 3.71 5.79 -2.39 -0.01 3.69 16 29 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 30 H 0.10 1.77 7.67 -2.39 -0.02 1.75 16 31 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 32 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 33 H 0.10 1.92 7.74 -2.39 -0.02 1.90 16 34 H 0.08 2.31 7.50 -2.39 -0.02 2.29 16 35 H 0.07 2.06 8.05 -2.39 -0.02 2.04 16 36 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 37 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 38 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 39 H 0.03 1.36 6.17 -2.38 -0.01 1.34 16 40 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 41 H 0.03 1.59 6.77 -2.39 -0.02 1.58 16 42 H 0.02 1.10 8.14 -2.39 -0.02 1.08 16 43 H 0.05 2.99 6.07 -2.39 -0.01 2.98 16 44 H 0.26 14.24 8.31 -92.71 -0.77 13.47 16 Total: -1.00 -66.22 339.28 4.63 -61.59 By element: Atomic # 1 Polarization: 18.37 SS G_CDS: 0.97 Total: 19.35 kcal Atomic # 6 Polarization: -27.16 SS G_CDS: 5.62 Total: -21.54 kcal Atomic # 7 Polarization: -100.11 SS G_CDS: -4.00 Total: -104.11 kcal Atomic # 14 Polarization: 42.68 SS G_CDS: 2.03 Total: 44.71 kcal Total: -66.22 4.63 -61.59 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000247441804.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.510 kcal (2) G-P(sol) polarization free energy of solvation -66.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.595 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds