Wall clock time and date at job start Mon Mar 30 2020 01:48:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08995 * 109.47278 * 2 1 4 4 C 1.50697 * 109.46802 * 239.99382 * 2 1 3 5 5 H 1.07998 * 120.00342 * 239.99989 * 4 2 1 6 6 C 1.37883 * 120.00082 * 60.00942 * 4 2 1 7 7 N 1.31519 * 119.99657 * 359.97438 * 6 4 2 8 8 Si 1.86802 * 120.00107 * 179.97438 * 6 4 2 9 9 H 1.48494 * 109.47092 * 359.97438 * 8 6 4 10 10 H 1.48497 * 109.46896 * 119.99658 * 8 6 4 11 11 H 1.48498 * 109.46772 * 239.99623 * 8 6 4 12 12 N 1.46895 * 109.46615 * 119.99946 * 2 1 3 13 13 C 1.46901 * 110.99993 * 176.04629 * 12 2 1 14 14 C 1.46898 * 111.00135 * 299.99660 * 12 2 1 15 15 C 1.53000 * 109.47411 * 163.58538 * 14 12 2 16 16 H 1.09006 * 109.47040 * 306.31372 * 15 14 12 17 17 O 1.42899 * 109.47432 * 66.31190 * 15 14 12 18 18 C 1.52993 * 109.47474 * 186.31605 * 15 14 12 19 19 C 1.53000 * 109.47436 * 174.99712 * 18 15 14 20 20 C 1.50705 * 109.47197 * 179.97438 * 19 18 15 21 21 C 1.38235 * 119.99817 * 269.72495 * 20 19 18 22 22 C 1.38236 * 119.99461 * 179.76273 * 21 20 19 23 23 C 1.38232 * 120.00214 * 0.51455 * 22 21 20 24 24 C 1.38234 * 119.99849 * 359.74134 * 23 22 21 25 25 C 1.38228 * 120.00066 * 0.02562 * 24 23 22 26 26 H 1.09003 * 109.47168 * 300.00792 * 1 2 3 27 27 H 1.09007 * 109.46515 * 60.00054 * 1 2 3 28 28 H 1.08995 * 109.47278 * 179.97438 * 1 2 3 29 29 H 0.96997 * 119.99513 * 180.02562 * 7 6 4 30 30 H 1.09001 * 109.47692 * 190.72568 * 13 12 2 31 31 H 1.09008 * 109.46762 * 310.72401 * 13 12 2 32 32 H 1.08998 * 109.47565 * 70.71710 * 13 12 2 33 33 H 1.08997 * 109.47269 * 43.58246 * 14 12 2 34 34 H 1.08997 * 109.47201 * 283.58235 * 14 12 2 35 35 H 0.96702 * 114.00022 * 60.00137 * 17 15 14 36 36 H 1.09002 * 109.47040 * 294.99831 * 18 15 14 37 37 H 1.09000 * 109.47308 * 54.99300 * 18 15 14 38 38 H 1.08993 * 109.46936 * 299.99873 * 19 18 15 39 39 H 1.08999 * 109.46910 * 59.99977 * 19 18 15 40 40 H 1.07996 * 120.00132 * 0.02562 * 21 20 19 41 41 H 1.08003 * 119.99904 * 180.23002 * 22 21 20 42 42 H 1.08005 * 120.00291 * 179.71708 * 23 22 21 43 43 H 1.08005 * 120.00078 * 179.97438 * 24 23 22 44 44 H 1.08005 * 120.00237 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1313 6 6 1.6993 -0.2395 -2.4827 7 7 0.9430 0.8296 -2.6034 8 14 2.3225 -1.1198 -4.0079 9 1 3.1482 -2.2860 -3.6037 10 1 1.1677 -1.5868 -4.8164 11 1 3.1473 -0.1861 -4.8160 12 7 2.0196 -0.6925 1.1994 13 6 3.4850 -0.7946 1.1871 14 6 1.5486 -0.0263 2.4210 15 6 1.7164 -0.9699 3.6137 16 1 1.2259 -1.9191 3.3978 17 8 3.1075 -1.1956 3.8505 18 6 1.0834 -0.3396 4.8557 19 6 1.1402 -1.3337 6.0174 20 6 0.5172 -0.7126 7.2410 21 6 1.2997 0.0042 8.1268 22 6 0.7273 0.5780 9.2466 23 6 -0.6256 0.4261 9.4862 24 6 -1.4071 -0.2952 8.6031 25 6 -0.8357 -0.8650 7.4808 26 1 -0.3634 0.5140 0.8899 27 1 -0.3632 0.5139 -0.8901 28 1 -0.3633 -1.0276 -0.0005 29 1 0.7084 1.1608 -3.4845 30 1 3.8089 -1.4702 1.9788 31 1 3.8142 -1.1810 0.2225 32 1 3.9194 0.1916 1.3507 33 1 0.4963 0.2350 2.3098 34 1 2.1319 0.8790 2.5892 35 1 3.6080 -0.3925 4.0494 36 1 1.6309 0.5640 5.1238 37 1 0.0445 -0.0859 4.6451 38 1 0.5927 -2.2373 5.7494 39 1 2.1791 -1.5874 6.2281 40 1 2.3574 0.1195 7.9418 41 1 1.3380 1.1413 9.9368 42 1 -1.0720 0.8706 10.3635 43 1 -2.4641 -0.4144 8.7905 44 1 -1.4462 -1.4289 6.7911 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000248594380.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:48:12 Heat of formation + Delta-G solvation = -32.220733 kcal Electronic energy + Delta-G solvation = -21267.466455 eV Core-core repulsion = 18184.284012 eV Total energy + Delta-G solvation = -3083.182443 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.51665 -38.24660 -35.95055 -33.88442 -32.64096 -31.04490 -30.59329 -29.10903 -27.82623 -25.32567 -24.10506 -22.88755 -22.72465 -21.19602 -20.92053 -19.31607 -16.92144 -16.38321 -16.01043 -15.80609 -15.39576 -15.19837 -15.03977 -14.16418 -13.80472 -13.68902 -13.50257 -13.21156 -13.02145 -12.89139 -12.42868 -12.11120 -11.98654 -11.78647 -11.31891 -11.21806 -11.00094 -10.95606 -10.81534 -10.78827 -10.62135 -10.40954 -10.18384 -10.09648 -9.88985 -9.25611 -9.08561 -8.86360 -8.69433 -8.40441 -7.09442 -5.99566 -4.03336 1.20473 1.23684 3.30785 3.38529 3.43620 3.62226 4.40160 4.52680 4.67694 4.71349 4.82430 4.92719 5.00620 5.12073 5.23945 5.32087 5.35922 5.40165 5.51292 5.62769 5.74996 5.82322 5.86077 5.93125 5.97564 6.19269 6.20733 6.31131 6.34416 6.38570 6.50250 6.55968 6.59914 6.85716 6.86565 7.01704 7.06347 7.20600 7.55509 7.76792 7.85649 7.91380 8.25932 8.36942 8.65285 9.04276 9.61529 11.07470 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.038582 B = 0.002962 C = 0.002843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 725.548932 B = 9450.809783 C = 9846.521095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.209 3.791 3 H -0.005 1.005 4 C -0.500 4.500 5 H 0.065 0.935 6 C 0.057 3.943 7 N -0.895 5.895 8 Si 0.896 3.104 9 H -0.273 1.273 10 H -0.284 1.284 11 H -0.286 1.286 12 N -0.531 5.531 13 C 0.027 3.973 14 C 0.019 3.981 15 C 0.113 3.887 16 H 0.104 0.896 17 O -0.556 6.556 18 C -0.143 4.143 19 C -0.077 4.077 20 C -0.076 4.076 21 C -0.119 4.119 22 C -0.120 4.120 23 C -0.131 4.131 24 C -0.119 4.119 25 C -0.119 4.119 26 H 0.007 0.993 27 H 0.084 0.916 28 H 0.034 0.966 29 H 0.259 0.741 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.000 1.000 33 H 0.081 0.919 34 H 0.021 0.979 35 H 0.365 0.635 36 H 0.063 0.937 37 H 0.072 0.928 38 H 0.072 0.928 39 H 0.078 0.922 40 H 0.121 0.879 41 H 0.119 0.881 42 H 0.118 0.882 43 H 0.120 0.880 44 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.379 -0.558 21.456 21.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.103 3.897 3 H 0.012 0.988 4 C -0.539 4.539 5 H 0.083 0.917 6 C -0.144 4.144 7 N -0.534 5.534 8 Si 0.724 3.276 9 H -0.197 1.197 10 H -0.210 1.210 11 H -0.212 1.212 12 N -0.256 5.256 13 C -0.121 4.121 14 C -0.110 4.110 15 C 0.054 3.946 16 H 0.122 0.878 17 O -0.360 6.360 18 C -0.181 4.181 19 C -0.115 4.115 20 C -0.076 4.076 21 C -0.137 4.137 22 C -0.138 4.138 23 C -0.149 4.149 24 C -0.137 4.137 25 C -0.137 4.137 26 H 0.026 0.974 27 H 0.103 0.897 28 H 0.053 0.947 29 H 0.069 0.931 30 H 0.089 0.911 31 H 0.090 0.910 32 H 0.018 0.982 33 H 0.099 0.901 34 H 0.039 0.961 35 H 0.211 0.789 36 H 0.081 0.919 37 H 0.090 0.910 38 H 0.091 0.909 39 H 0.097 0.903 40 H 0.139 0.861 41 H 0.137 0.863 42 H 0.136 0.864 43 H 0.138 0.862 44 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -1.829 -1.542 21.169 21.304 hybrid contribution 0.594 1.215 -0.764 1.553 sum -1.234 -0.327 20.405 20.445 Atomic orbital electron populations 1.21871 0.97917 0.99603 0.99737 1.19263 0.92206 0.91958 0.86311 0.98778 1.21213 1.30723 1.12187 0.89752 0.91741 1.24949 0.95280 0.95115 0.99053 1.69908 1.37132 1.23168 1.23232 0.86466 0.78593 0.79627 0.82890 1.19709 1.21042 1.21196 1.62069 1.09879 1.52034 1.01594 1.22513 0.88233 0.98494 1.02858 1.22842 1.01492 0.94496 0.92164 1.22048 0.81403 0.99861 0.91269 0.87833 1.86590 1.20325 1.36489 1.92620 1.22268 1.02221 0.98512 0.95095 1.20578 1.01407 0.98016 0.91469 1.20055 0.93820 0.97433 0.96253 1.21087 0.99861 0.98121 0.94637 1.21141 0.95204 0.99828 0.97645 1.21120 0.94206 0.99873 0.99679 1.21152 0.99758 0.97947 0.94869 1.21120 0.94657 1.00289 0.97622 0.97392 0.89697 0.94668 0.93106 0.91064 0.90992 0.98161 0.90124 0.96124 0.78888 0.91863 0.90962 0.90904 0.90337 0.86135 0.86293 0.86391 0.86229 0.86001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.28 8.79 37.16 0.33 -2.95 16 2 C 0.21 5.35 2.06 -68.87 -0.14 5.21 16 3 H -0.01 -0.15 8.14 -51.93 -0.42 -0.57 16 4 C -0.50 -13.90 7.79 -34.44 -0.27 -14.17 16 5 H 0.06 1.80 6.46 -52.49 -0.34 1.46 16 6 C 0.06 1.59 5.30 -17.82 -0.09 1.49 16 7 N -0.89 -25.77 11.32 55.43 0.63 -25.14 16 8 Si 0.90 21.55 29.54 -169.99 -5.02 16.53 16 9 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 10 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 11 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 12 N -0.53 -11.58 4.58 -236.29 -1.08 -12.66 16 13 C 0.03 0.56 8.83 60.07 0.53 1.09 16 14 C 0.02 0.34 4.64 -3.82 -0.02 0.32 16 15 C 0.11 1.61 3.16 -26.73 -0.08 1.53 16 16 H 0.10 1.61 8.14 -51.93 -0.42 1.19 16 17 O -0.56 -7.77 9.94 -35.23 -0.35 -8.12 16 18 C -0.14 -1.64 4.87 -26.73 -0.13 -1.77 16 19 C -0.08 -0.81 5.24 -27.88 -0.15 -0.96 16 20 C -0.08 -0.79 5.13 -104.62 -0.54 -1.33 16 21 C -0.12 -1.18 9.70 -39.58 -0.38 -1.56 16 22 C -0.12 -1.09 10.05 -39.58 -0.40 -1.49 16 23 C -0.13 -1.16 10.05 -39.58 -0.40 -1.56 16 24 C -0.12 -1.10 10.05 -39.59 -0.40 -1.50 16 25 C -0.12 -1.20 9.70 -39.59 -0.38 -1.59 16 26 H 0.01 0.16 6.09 -51.93 -0.32 -0.16 16 27 H 0.08 2.29 6.07 -51.93 -0.32 1.97 16 28 H 0.03 0.85 8.14 -51.93 -0.42 0.43 16 29 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 30 H 0.07 1.32 5.77 -51.93 -0.30 1.02 16 31 H 0.07 1.61 5.92 -51.92 -0.31 1.30 16 32 H 0.00 0.00 7.97 -51.93 -0.41 -0.42 16 33 H 0.08 1.46 5.61 -51.93 -0.29 1.17 16 34 H 0.02 0.36 7.93 -51.93 -0.41 -0.05 16 35 H 0.36 4.06 9.05 45.56 0.41 4.48 16 36 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 37 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.07 0.76 8.09 -51.93 -0.42 0.34 16 39 H 0.08 0.83 7.76 -51.93 -0.40 0.43 16 40 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 41 H 0.12 0.83 8.06 -52.48 -0.42 0.41 16 42 H 0.12 0.79 8.06 -52.48 -0.42 0.37 16 43 H 0.12 0.87 8.06 -52.48 -0.42 0.44 16 44 H 0.12 1.10 8.06 -52.48 -0.42 0.67 16 LS Contribution 348.08 15.07 5.25 5.25 Total: -1.00 -30.15 348.08 -9.57 -39.72 By element: Atomic # 1 Polarization: 10.13 SS G_CDS: -6.47 Total: 3.66 kcal Atomic # 6 Polarization: -16.71 SS G_CDS: -2.52 Total: -19.23 kcal Atomic # 7 Polarization: -37.35 SS G_CDS: -0.45 Total: -37.80 kcal Atomic # 8 Polarization: -7.77 SS G_CDS: -0.35 Total: -8.12 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -30.15 -9.57 -39.72 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000248594380.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.498 kcal (2) G-P(sol) polarization free energy of solvation -30.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.719 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds