Wall clock time and date at job start Mon Mar 30 2020 01:48:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09004 * 109.47013 * 2 1 4 4 C 1.50701 * 109.47051 * 119.99895 * 2 1 3 5 5 H 1.08007 * 119.99942 * 120.00123 * 4 2 1 6 6 C 1.37881 * 120.00054 * 299.99826 * 4 2 1 7 7 N 1.31518 * 119.99445 * 179.97438 * 6 4 2 8 8 Si 1.86794 * 120.00232 * 0.02562 * 6 4 2 9 9 H 1.48507 * 109.47042 * 89.99643 * 8 6 4 10 10 H 1.48498 * 109.47095 * 209.99804 * 8 6 4 11 11 H 1.48504 * 109.46802 * 330.00009 * 8 6 4 12 12 N 1.46894 * 109.46878 * 240.00020 * 2 1 3 13 13 C 1.46898 * 111.00278 * 306.04175 * 12 2 1 14 14 C 1.46899 * 110.99901 * 70.00301 * 12 2 1 15 15 C 1.53000 * 109.47404 * 75.93937 * 14 12 2 16 16 H 1.08997 * 109.47342 * 301.43134 * 15 14 12 17 17 O 1.42905 * 109.47300 * 61.43501 * 15 14 12 18 18 C 1.52999 * 109.47156 * 181.43348 * 15 14 12 19 19 C 1.53000 * 109.47535 * 175.00101 * 18 15 14 20 20 C 1.50693 * 109.47428 * 180.02562 * 19 18 15 21 21 C 1.38243 * 119.99872 * 269.72346 * 20 19 18 22 22 C 1.38234 * 120.00159 * 179.76542 * 21 20 19 23 23 C 1.38240 * 119.99835 * 0.50929 * 22 21 20 24 24 C 1.38235 * 119.99758 * 359.74806 * 23 22 21 25 25 C 1.38229 * 120.00516 * 90.00130 * 20 19 18 26 26 H 1.08994 * 109.47051 * 180.02562 * 1 2 3 27 27 H 1.08993 * 109.47142 * 59.99610 * 1 2 3 28 28 H 1.09008 * 109.46915 * 300.00115 * 1 2 3 29 29 H 0.96999 * 119.99098 * 179.97438 * 7 6 4 30 30 H 1.08998 * 109.46612 * 65.94782 * 13 12 2 31 31 H 1.08994 * 109.47237 * 185.94203 * 13 12 2 32 32 H 1.09001 * 109.47014 * 305.94832 * 13 12 2 33 33 H 1.09010 * 109.46829 * 195.93843 * 14 12 2 34 34 H 1.08996 * 109.47161 * 315.93373 * 14 12 2 35 35 H 0.96703 * 113.99751 * 59.99358 * 17 15 14 36 36 H 1.09007 * 109.47309 * 294.99878 * 18 15 14 37 37 H 1.09004 * 109.47267 * 54.99927 * 18 15 14 38 38 H 1.09007 * 109.46640 * 300.00187 * 19 18 15 39 39 H 1.09004 * 109.46985 * 59.99654 * 19 18 15 40 40 H 1.08002 * 119.99716 * 0.02562 * 21 20 19 41 41 H 1.07999 * 119.99948 * 180.22906 * 22 21 20 42 42 H 1.07990 * 119.99953 * 179.72091 * 23 22 21 43 43 H 1.08001 * 119.99764 * 179.97438 * 24 23 22 44 44 H 1.08000 * 119.99571 * 359.97438 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6533 -1.5885 1.1314 6 6 1.6993 -0.2393 2.4828 7 7 2.1373 -0.8596 3.5566 8 14 0.6248 1.2791 2.6542 9 1 -0.8028 0.8726 2.6999 10 1 0.9760 1.9951 3.9069 11 1 0.8471 2.1765 1.4921 12 7 2.0196 -0.6925 -1.1994 13 6 1.4343 -2.0355 -1.3078 14 6 1.7529 0.0973 -2.4090 15 6 2.7505 1.2543 -2.4929 16 1 2.6625 1.8754 -1.6016 17 8 4.0782 0.7332 -2.5813 18 6 2.4501 2.0977 -3.7337 19 6 3.3657 3.3233 -3.7513 20 6 3.0694 4.1542 -4.9730 21 6 3.7543 3.9202 -6.1508 22 6 3.4791 4.6791 -7.2730 23 6 2.5265 5.6792 -7.2144 24 6 1.8455 5.9168 -6.0351 25 6 2.1170 5.1543 -4.9145 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 0.5139 0.8900 29 1 1.9033 -0.5280 4.4375 30 1 0.3606 -1.9513 -1.4752 31 1 1.8919 -2.5649 -2.1434 32 1 1.6162 -2.5865 -0.3851 33 1 1.8586 -0.5381 -3.2884 34 1 0.7386 0.4943 -2.3674 35 1 4.2290 0.1697 -3.3526 36 1 2.6242 1.5012 -4.6293 37 1 1.4096 2.4217 -3.7096 38 1 3.1916 3.9197 -2.8556 39 1 4.4062 2.9992 -3.7754 40 1 4.5014 3.1415 -6.1955 41 1 4.0115 4.4937 -8.1941 42 1 2.3148 6.2751 -8.0897 43 1 1.1016 6.6984 -5.9892 44 1 1.5849 5.3399 -3.9932 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000248594382.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:48:14 Heat of formation + Delta-G solvation = -23.912096 kcal Electronic energy + Delta-G solvation = -21546.821969 eV Core-core repulsion = 18463.999816 eV Total energy + Delta-G solvation = -3082.822153 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.51605 -38.31417 -36.32243 -33.80825 -32.56140 -31.04812 -30.64836 -29.68006 -27.77570 -25.25812 -24.82594 -23.04667 -22.72671 -21.46504 -20.86557 -19.06798 -16.91798 -16.66930 -16.07800 -15.78876 -15.39750 -15.35298 -14.80763 -14.45933 -14.13943 -13.63823 -13.45644 -13.28852 -13.12430 -12.98238 -12.63934 -12.24764 -12.01049 -11.97601 -11.84559 -11.39522 -11.32221 -11.17482 -10.97718 -10.79762 -10.75365 -10.60465 -10.19342 -9.93705 -9.58917 -9.49712 -9.09056 -9.01164 -8.77256 -8.54975 -7.25976 -6.03017 -4.00042 1.20145 1.23178 3.26173 3.35925 3.39237 3.61790 4.41768 4.43321 4.68612 4.73395 4.83298 4.91800 4.98886 5.08347 5.19921 5.27757 5.34408 5.37713 5.42203 5.58633 5.69126 5.78322 5.81635 5.90820 5.93385 5.96547 6.08199 6.19810 6.23062 6.26580 6.27871 6.30844 6.33766 6.42972 6.54847 6.57166 6.72350 6.85447 6.88594 7.19183 7.68212 7.93983 8.10358 8.12699 8.70813 9.06087 9.59366 11.10468 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.023895 B = 0.003723 C = 0.003475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1171.535533 B = 7519.186359 C = 8055.715844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.180 3.820 3 H 0.038 0.962 4 C -0.497 4.497 5 H 0.082 0.918 6 C 0.068 3.932 7 N -0.901 5.901 8 Si 0.885 3.115 9 H -0.281 1.281 10 H -0.296 1.296 11 H -0.269 1.269 12 N -0.514 5.514 13 C 0.034 3.966 14 C 0.018 3.982 15 C 0.113 3.887 16 H 0.099 0.901 17 O -0.541 6.541 18 C -0.143 4.143 19 C -0.080 4.080 20 C -0.074 4.074 21 C -0.119 4.119 22 C -0.120 4.120 23 C -0.131 4.131 24 C -0.120 4.120 25 C -0.120 4.120 26 H 0.056 0.944 27 H 0.027 0.973 28 H 0.044 0.956 29 H 0.263 0.737 30 H 0.013 0.987 31 H 0.045 0.955 32 H 0.081 0.919 33 H 0.062 0.938 34 H 0.037 0.963 35 H 0.363 0.637 36 H 0.064 0.936 37 H 0.068 0.932 38 H 0.073 0.927 39 H 0.081 0.919 40 H 0.122 0.878 41 H 0.119 0.881 42 H 0.118 0.882 43 H 0.119 0.881 44 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.654 9.977 -20.884 23.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C 0.073 3.927 3 H 0.056 0.944 4 C -0.535 4.535 5 H 0.100 0.900 6 C -0.133 4.133 7 N -0.540 5.540 8 Si 0.716 3.284 9 H -0.209 1.209 10 H -0.224 1.224 11 H -0.195 1.195 12 N -0.236 5.236 13 C -0.115 4.115 14 C -0.111 4.111 15 C 0.054 3.946 16 H 0.117 0.883 17 O -0.344 6.344 18 C -0.181 4.181 19 C -0.117 4.117 20 C -0.074 4.074 21 C -0.137 4.137 22 C -0.138 4.138 23 C -0.149 4.149 24 C -0.138 4.138 25 C -0.138 4.138 26 H 0.075 0.925 27 H 0.046 0.954 28 H 0.063 0.937 29 H 0.073 0.927 30 H 0.032 0.968 31 H 0.063 0.937 32 H 0.099 0.901 33 H 0.080 0.920 34 H 0.055 0.945 35 H 0.208 0.792 36 H 0.083 0.917 37 H 0.087 0.913 38 H 0.091 0.909 39 H 0.099 0.901 40 H 0.140 0.860 41 H 0.137 0.863 42 H 0.136 0.864 43 H 0.137 0.863 44 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -0.062 10.252 -20.071 22.538 hybrid contribution -1.848 0.666 -0.404 2.006 sum -1.910 10.918 -20.475 23.283 Atomic orbital electron populations 1.22841 1.02008 1.01045 0.98755 1.19788 0.88323 0.95361 0.89250 0.94404 1.20937 1.31160 1.13675 0.87746 0.90012 1.24922 0.95977 0.96545 0.95868 1.69884 1.45913 1.40344 0.97825 0.86902 0.80502 0.84058 0.76906 1.20874 1.22404 1.19462 1.62092 1.58343 1.02018 1.01180 1.22283 0.95617 0.91458 1.02112 1.22814 0.97391 0.96204 0.94696 1.21935 0.82687 0.93083 0.96931 0.88327 1.86669 1.29099 1.68664 1.50016 1.22285 0.99967 0.96666 0.99177 1.20590 1.01016 0.95303 0.94780 1.20056 0.95717 0.96016 0.95633 1.21101 1.00053 0.99881 0.92640 1.21144 0.98157 0.96166 0.98354 1.21116 0.97299 0.98558 0.97942 1.21148 0.99779 0.99635 0.93195 1.21127 0.98031 0.95915 0.98699 0.92487 0.95402 0.93703 0.92705 0.96848 0.93651 0.90059 0.91970 0.94536 0.79194 0.91728 0.91302 0.90872 0.90051 0.86038 0.86265 0.86397 0.86264 0.86066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -4.09 7.95 37.16 0.30 -3.80 16 2 C 0.18 4.27 1.81 -68.87 -0.12 4.14 16 3 H 0.04 0.94 5.68 -51.93 -0.30 0.64 16 4 C -0.50 -14.04 8.46 -34.44 -0.29 -14.33 16 5 H 0.08 2.54 7.38 -52.48 -0.39 2.15 16 6 C 0.07 1.97 5.45 -17.82 -0.10 1.88 16 7 N -0.90 -27.76 13.96 55.43 0.77 -26.99 16 8 Si 0.89 22.09 24.37 -169.99 -4.14 17.95 16 9 H -0.28 -6.85 6.87 56.52 0.39 -6.46 16 10 H -0.30 -7.42 7.11 56.52 0.40 -7.02 16 11 H -0.27 -6.42 6.53 56.52 0.37 -6.05 16 12 N -0.51 -10.54 4.52 -236.29 -1.07 -11.61 16 13 C 0.03 0.64 8.58 60.06 0.52 1.15 16 14 C 0.02 0.29 4.55 -3.82 -0.02 0.28 16 15 C 0.11 1.71 3.04 -26.73 -0.08 1.63 16 16 H 0.10 1.74 6.76 -51.93 -0.35 1.39 16 17 O -0.54 -8.55 12.77 -35.23 -0.45 -9.00 16 18 C -0.14 -1.66 4.87 -26.73 -0.13 -1.79 16 19 C -0.08 -0.90 5.24 -27.89 -0.15 -1.05 16 20 C -0.07 -0.81 5.13 -104.63 -0.54 -1.34 16 21 C -0.12 -1.19 9.70 -39.58 -0.38 -1.57 16 22 C -0.12 -1.10 10.05 -39.58 -0.40 -1.49 16 23 C -0.13 -1.17 10.05 -39.58 -0.40 -1.57 16 24 C -0.12 -1.13 10.05 -39.58 -0.40 -1.53 16 25 C -0.12 -1.26 9.70 -39.59 -0.38 -1.64 16 26 H 0.06 1.22 6.46 -51.93 -0.34 0.88 16 27 H 0.03 0.52 6.45 -51.93 -0.33 0.19 16 28 H 0.04 1.03 3.27 -51.92 -0.17 0.86 16 29 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 30 H 0.01 0.24 6.58 -51.93 -0.34 -0.11 16 31 H 0.04 0.74 8.11 -51.93 -0.42 0.32 16 32 H 0.08 1.73 6.72 -51.93 -0.35 1.38 16 33 H 0.06 0.88 7.91 -51.92 -0.41 0.46 16 34 H 0.04 0.59 6.17 -51.93 -0.32 0.27 16 35 H 0.36 4.29 9.05 45.56 0.41 4.71 16 36 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 38 H 0.07 0.86 8.09 -51.93 -0.42 0.44 16 39 H 0.08 0.94 7.77 -51.93 -0.40 0.53 16 40 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 41 H 0.12 0.83 8.06 -52.49 -0.42 0.41 16 42 H 0.12 0.80 8.06 -52.49 -0.42 0.37 16 43 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 44 H 0.12 1.16 8.06 -52.49 -0.42 0.74 16 LS Contribution 342.02 15.07 5.15 5.15 Total: -1.00 -31.83 342.02 -8.58 -40.41 By element: Atomic # 1 Polarization: 11.39 SS G_CDS: -6.27 Total: 5.12 kcal Atomic # 6 Polarization: -18.46 SS G_CDS: -2.58 Total: -21.03 kcal Atomic # 7 Polarization: -38.30 SS G_CDS: -0.30 Total: -38.60 kcal Atomic # 8 Polarization: -8.55 SS G_CDS: -0.45 Total: -9.00 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -4.14 Total: 17.95 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -31.83 -8.58 -40.41 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000248594382.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.500 kcal (2) G-P(sol) polarization free energy of solvation -31.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.412 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds