Wall clock time and date at job start Mon Mar 30 2020 01:48:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09004 * 109.47013 * 2 1 4 4 C 1.50701 * 109.47051 * 119.99895 * 2 1 3 5 5 H 1.08007 * 119.99942 * 120.00123 * 4 2 1 6 6 C 1.37881 * 120.00054 * 299.99826 * 4 2 1 7 7 N 1.31518 * 119.99445 * 179.97438 * 6 4 2 8 8 Si 1.86794 * 120.00232 * 0.02562 * 6 4 2 9 9 H 1.48507 * 109.47042 * 89.99643 * 8 6 4 10 10 H 1.48498 * 109.47095 * 209.99804 * 8 6 4 11 11 H 1.48504 * 109.46802 * 330.00009 * 8 6 4 12 12 N 1.46894 * 109.46878 * 240.00020 * 2 1 3 13 13 C 1.46898 * 111.00278 * 306.04175 * 12 2 1 14 14 C 1.46899 * 110.99901 * 70.00301 * 12 2 1 15 15 C 1.53000 * 109.47404 * 75.93937 * 14 12 2 16 16 H 1.08997 * 109.47342 * 301.43134 * 15 14 12 17 17 O 1.42905 * 109.47300 * 61.43501 * 15 14 12 18 18 C 1.52999 * 109.47156 * 181.43348 * 15 14 12 19 19 C 1.53000 * 109.47535 * 175.00101 * 18 15 14 20 20 C 1.50693 * 109.47428 * 180.02562 * 19 18 15 21 21 C 1.38243 * 119.99872 * 269.72346 * 20 19 18 22 22 C 1.38234 * 120.00159 * 179.76542 * 21 20 19 23 23 C 1.38240 * 119.99835 * 0.50929 * 22 21 20 24 24 C 1.38235 * 119.99758 * 359.74806 * 23 22 21 25 25 C 1.38229 * 120.00516 * 90.00130 * 20 19 18 26 26 H 1.08994 * 109.47051 * 180.02562 * 1 2 3 27 27 H 1.08993 * 109.47142 * 59.99610 * 1 2 3 28 28 H 1.09008 * 109.46915 * 300.00115 * 1 2 3 29 29 H 0.96999 * 119.99098 * 179.97438 * 7 6 4 30 30 H 1.08998 * 109.46612 * 65.94782 * 13 12 2 31 31 H 1.08994 * 109.47237 * 185.94203 * 13 12 2 32 32 H 1.09001 * 109.47014 * 305.94832 * 13 12 2 33 33 H 1.09010 * 109.46829 * 195.93843 * 14 12 2 34 34 H 1.08996 * 109.47161 * 315.93373 * 14 12 2 35 35 H 0.96703 * 113.99751 * 59.99358 * 17 15 14 36 36 H 1.09007 * 109.47309 * 294.99878 * 18 15 14 37 37 H 1.09004 * 109.47267 * 54.99927 * 18 15 14 38 38 H 1.09007 * 109.46640 * 300.00187 * 19 18 15 39 39 H 1.09004 * 109.46985 * 59.99654 * 19 18 15 40 40 H 1.08002 * 119.99716 * 0.02562 * 21 20 19 41 41 H 1.07999 * 119.99948 * 180.22906 * 22 21 20 42 42 H 1.07990 * 119.99953 * 179.72091 * 23 22 21 43 43 H 1.08001 * 119.99764 * 179.97438 * 24 23 22 44 44 H 1.08000 * 119.99571 * 359.97438 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6533 -1.5885 1.1314 6 6 1.6993 -0.2393 2.4828 7 7 2.1373 -0.8596 3.5566 8 14 0.6248 1.2791 2.6542 9 1 -0.8028 0.8726 2.6999 10 1 0.9760 1.9951 3.9069 11 1 0.8471 2.1765 1.4921 12 7 2.0196 -0.6925 -1.1994 13 6 1.4343 -2.0355 -1.3078 14 6 1.7529 0.0973 -2.4090 15 6 2.7505 1.2543 -2.4929 16 1 2.6625 1.8754 -1.6016 17 8 4.0782 0.7332 -2.5813 18 6 2.4501 2.0977 -3.7337 19 6 3.3657 3.3233 -3.7513 20 6 3.0694 4.1542 -4.9730 21 6 3.7543 3.9202 -6.1508 22 6 3.4791 4.6791 -7.2730 23 6 2.5265 5.6792 -7.2144 24 6 1.8455 5.9168 -6.0351 25 6 2.1170 5.1543 -4.9145 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 0.5139 0.8900 29 1 1.9033 -0.5280 4.4375 30 1 0.3606 -1.9513 -1.4752 31 1 1.8919 -2.5649 -2.1434 32 1 1.6162 -2.5865 -0.3851 33 1 1.8586 -0.5381 -3.2884 34 1 0.7386 0.4943 -2.3674 35 1 4.2290 0.1697 -3.3526 36 1 2.6242 1.5012 -4.6293 37 1 1.4096 2.4217 -3.7096 38 1 3.1916 3.9197 -2.8556 39 1 4.4062 2.9992 -3.7754 40 1 4.5014 3.1415 -6.1955 41 1 4.0115 4.4937 -8.1941 42 1 2.3148 6.2751 -8.0897 43 1 1.1016 6.6984 -5.9892 44 1 1.5849 5.3399 -3.9932 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000248594382.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:48:14 Heat of formation + Delta-G solvation = -46.165730 kcal Electronic energy + Delta-G solvation = -21547.786959 eV Core-core repulsion = 18463.999816 eV Total energy + Delta-G solvation = -3083.787143 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.31203 -39.64459 -37.72476 -34.71969 -34.63382 -32.00242 -31.73233 -31.17316 -28.92147 -27.23408 -26.14308 -24.44061 -23.41837 -22.63200 -21.70776 -20.76047 -18.71962 -17.60757 -17.47889 -17.08368 -16.67371 -16.19157 -16.06946 -15.87581 -15.46280 -14.97866 -14.91948 -14.28081 -14.17242 -14.01002 -13.94507 -13.87516 -13.50638 -13.32410 -13.09819 -12.86296 -12.68797 -12.35758 -12.19694 -12.06843 -11.95009 -11.84800 -11.63158 -11.60697 -11.34556 -11.08350 -10.74820 -10.69233 -9.79132 -9.53701 -8.82675 -8.27012 -6.28555 0.48500 0.53028 1.27349 1.33837 1.43665 2.31675 2.89497 3.06822 3.19235 3.75456 3.78769 3.95189 4.02693 4.20034 4.26364 4.29079 4.34247 4.38045 4.48293 4.52321 4.54080 4.60119 4.67841 4.69296 4.70676 4.76958 4.84797 4.89538 4.94494 5.05613 5.15707 5.20465 5.24009 5.30954 5.34972 5.43406 5.61646 5.65692 5.66615 5.79278 6.07262 6.16815 6.46501 6.73440 6.78410 7.10890 7.35587 8.90445 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.023895 B = 0.003723 C = 0.003475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1171.535533 B = 7519.186359 C = 8055.715844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.186 3.814 3 H 0.029 0.971 4 C -0.499 4.499 5 H 0.036 0.964 6 C 0.009 3.991 7 N -0.952 5.952 8 Si 0.949 3.051 9 H -0.267 1.267 10 H -0.299 1.299 11 H -0.250 1.250 12 N -0.535 5.535 13 C 0.038 3.962 14 C 0.020 3.980 15 C 0.118 3.882 16 H 0.067 0.933 17 O -0.563 6.563 18 C -0.127 4.127 19 C -0.075 4.075 20 C -0.088 4.088 21 C -0.129 4.129 22 C -0.126 4.126 23 C -0.135 4.135 24 C -0.128 4.128 25 C -0.136 4.136 26 H 0.055 0.945 27 H 0.061 0.939 28 H 0.035 0.965 29 H 0.264 0.736 30 H 0.027 0.973 31 H 0.074 0.926 32 H 0.043 0.957 33 H 0.091 0.909 34 H 0.044 0.956 35 H 0.380 0.620 36 H 0.082 0.918 37 H 0.073 0.927 38 H 0.061 0.939 39 H 0.076 0.924 40 H 0.131 0.869 41 H 0.140 0.860 42 H 0.140 0.860 43 H 0.137 0.863 44 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.008 11.542 -23.923 26.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.077 3.923 3 H 0.047 0.953 4 C -0.538 4.538 5 H 0.054 0.946 6 C -0.188 4.188 7 N -0.593 5.593 8 Si 0.776 3.224 9 H -0.193 1.193 10 H -0.227 1.227 11 H -0.174 1.174 12 N -0.258 5.258 13 C -0.110 4.110 14 C -0.109 4.109 15 C 0.058 3.942 16 H 0.085 0.915 17 O -0.369 6.369 18 C -0.165 4.165 19 C -0.112 4.112 20 C -0.088 4.088 21 C -0.147 4.147 22 C -0.143 4.143 23 C -0.153 4.153 24 C -0.145 4.145 25 C -0.154 4.154 26 H 0.074 0.926 27 H 0.080 0.920 28 H 0.053 0.947 29 H 0.073 0.927 30 H 0.045 0.955 31 H 0.093 0.907 32 H 0.062 0.938 33 H 0.109 0.891 34 H 0.062 0.938 35 H 0.228 0.772 36 H 0.101 0.899 37 H 0.092 0.908 38 H 0.080 0.920 39 H 0.094 0.906 40 H 0.149 0.851 41 H 0.158 0.842 42 H 0.158 0.842 43 H 0.154 0.846 44 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -1.418 11.809 -23.155 26.031 hybrid contribution -1.314 0.103 0.456 1.395 sum -2.733 11.911 -22.698 25.779 Atomic orbital electron populations 1.22700 1.00067 1.01398 0.99901 1.19523 0.89652 0.94291 0.88806 0.95316 1.21214 1.30030 1.12360 0.90163 0.94613 1.25786 0.97631 0.99959 0.95406 1.70047 1.48107 1.42607 0.98507 0.85857 0.79065 0.80179 0.77266 1.19279 1.22652 1.17405 1.61957 1.59087 1.02904 1.01838 1.22225 0.96727 0.90670 1.01395 1.22930 0.97961 0.96464 0.93503 1.21819 0.82270 0.92770 0.97361 0.91487 1.86626 1.29536 1.69327 1.51449 1.22116 1.00170 0.96294 0.97922 1.20490 1.00639 0.95213 0.94850 1.20043 0.96570 0.96543 0.95649 1.21302 1.00265 1.00472 0.92703 1.21461 0.98171 0.95818 0.98897 1.21463 0.96774 0.98528 0.98552 1.21426 1.00197 0.99849 0.93067 1.21291 0.98388 0.96353 0.99376 0.92597 0.91977 0.94668 0.92655 0.95451 0.90698 0.93756 0.89070 0.93780 0.77182 0.89919 0.90839 0.92002 0.90568 0.85101 0.84169 0.84168 0.84555 0.85901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -7.53 7.95 71.98 0.57 -6.96 16 2 C 0.19 8.70 1.81 44.17 0.08 8.78 16 3 H 0.03 1.41 5.68 -2.39 -0.01 1.40 16 4 C -0.50 -29.11 8.46 25.60 0.22 -28.89 16 5 H 0.04 2.35 7.38 -2.91 -0.02 2.33 16 6 C 0.01 0.51 5.45 84.66 0.46 0.98 16 7 N -0.95 -60.82 13.96 21.45 0.30 -60.52 16 8 Si 0.95 45.68 24.37 68.60 1.67 47.35 16 9 H -0.27 -12.13 6.87 99.48 0.68 -11.45 16 10 H -0.30 -14.38 7.11 99.48 0.71 -13.67 16 11 H -0.25 -11.15 6.53 99.48 0.65 -10.50 16 12 N -0.54 -21.41 4.52 -901.48 -4.08 -25.49 16 13 C 0.04 1.39 8.58 127.69 1.10 2.49 16 14 C 0.02 0.58 4.55 86.30 0.39 0.98 16 15 C 0.12 3.37 3.04 30.59 0.09 3.47 16 16 H 0.07 2.35 6.76 -2.39 -0.02 2.33 16 17 O -0.56 -17.19 12.77 -148.98 -1.90 -19.09 16 18 C -0.13 -2.67 4.87 30.59 0.15 -2.52 16 19 C -0.07 -1.61 5.24 29.85 0.16 -1.45 16 20 C -0.09 -1.78 5.13 -19.87 -0.10 -1.88 16 21 C -0.13 -2.33 9.70 22.27 0.22 -2.11 16 22 C -0.13 -1.96 10.05 22.27 0.22 -1.74 16 23 C -0.14 -2.05 10.05 22.27 0.22 -1.83 16 24 C -0.13 -2.13 10.05 22.27 0.22 -1.91 16 25 C -0.14 -2.65 9.70 22.27 0.22 -2.44 16 26 H 0.06 2.30 6.46 -2.39 -0.02 2.28 16 27 H 0.06 2.13 6.45 -2.39 -0.02 2.12 16 28 H 0.03 1.52 3.27 -2.38 -0.01 1.51 16 29 H 0.26 15.84 8.31 -92.71 -0.77 15.07 16 30 H 0.03 0.92 6.58 -2.39 -0.02 0.90 16 31 H 0.07 2.27 8.11 -2.39 -0.02 2.25 16 32 H 0.04 1.93 6.72 -2.39 -0.02 1.91 16 33 H 0.09 2.20 7.91 -2.38 -0.02 2.18 16 34 H 0.04 1.27 6.17 -2.39 -0.01 1.25 16 35 H 0.38 8.25 9.05 -74.06 -0.67 7.58 16 36 H 0.08 1.46 8.14 -2.38 -0.02 1.44 16 37 H 0.07 1.50 8.14 -2.38 -0.02 1.48 16 38 H 0.06 1.44 8.09 -2.38 -0.02 1.42 16 39 H 0.08 1.69 7.77 -2.38 -0.02 1.67 16 40 H 0.13 2.00 8.06 -2.91 -0.02 1.98 16 41 H 0.14 1.52 8.06 -2.91 -0.02 1.49 16 42 H 0.14 1.43 8.06 -2.92 -0.02 1.41 16 43 H 0.14 1.70 8.06 -2.91 -0.02 1.68 16 44 H 0.12 2.23 8.06 -2.91 -0.02 2.21 16 Total: -1.00 -70.95 342.02 0.44 -70.51 By element: Atomic # 1 Polarization: 22.05 SS G_CDS: 0.23 Total: 22.28 kcal Atomic # 6 Polarization: -39.26 SS G_CDS: 4.22 Total: -35.04 kcal Atomic # 7 Polarization: -82.23 SS G_CDS: -3.78 Total: -86.01 kcal Atomic # 8 Polarization: -17.19 SS G_CDS: -1.90 Total: -19.09 kcal Atomic # 14 Polarization: 45.68 SS G_CDS: 1.67 Total: 47.35 kcal Total: -70.95 0.44 -70.51 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000248594382.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.341 kcal (2) G-P(sol) polarization free energy of solvation -70.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.506 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds