Wall clock time and date at job start Mon Mar 30 2020 02:31:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.35318 * 126.13506 * 2 1 4 4 C 1.50701 * 126.03429 * 0.02562 * 3 2 1 5 5 N 1.46904 * 109.47247 * 285.33945 * 4 3 2 6 6 C 1.46844 * 110.99523 * 288.78028 * 5 4 3 7 7 C 1.53038 * 109.52164 * 174.16219 * 6 5 4 8 8 C 1.53118 * 109.28142 * 59.17766 * 7 6 5 9 9 C 1.52995 * 109.52651 * 182.44571 * 8 7 6 10 10 C 1.50703 * 109.46919 * 294.68052 * 9 8 7 11 11 H 1.08001 * 119.99938 * 0.02562 * 10 9 8 12 12 C 1.37876 * 120.00217 * 179.97438 * 10 9 8 13 13 N 1.31517 * 120.00092 * 359.97438 * 12 10 9 14 14 Si 1.86805 * 120.00291 * 180.02562 * 12 10 9 15 15 H 1.48500 * 109.46641 * 359.97438 * 14 12 10 16 16 H 1.48497 * 109.47135 * 120.00109 * 14 12 10 17 17 H 1.48498 * 109.46730 * 239.99931 * 14 12 10 18 18 C 1.53121 * 109.15698 * 302.34785 * 8 7 6 19 19 C 1.46844 * 110.99958 * 164.57157 * 5 4 3 20 20 C 1.39861 * 107.92302 * 180.26266 * 3 2 1 21 21 N 1.30835 * 108.20461 * 359.73648 * 20 3 2 22 22 N 1.34950 * 126.12477 * 179.81212 * 2 1 3 23 23 C 1.46506 * 126.03560 * 359.97438 * 22 2 1 24 24 H 1.08999 * 109.46884 * 265.12385 * 1 2 3 25 25 H 1.09000 * 109.46512 * 25.12073 * 1 2 3 26 26 H 1.08998 * 109.47236 * 145.12043 * 1 2 3 27 27 H 1.09003 * 109.47425 * 45.33760 * 4 3 2 28 28 H 1.08999 * 109.46961 * 165.33764 * 4 3 2 29 29 H 1.09003 * 109.46667 * 294.17327 * 6 5 4 30 30 H 1.08996 * 109.46660 * 54.14941 * 6 5 4 31 31 H 1.09007 * 109.49917 * 299.23923 * 7 6 5 32 32 H 1.08998 * 109.53933 * 179.14300 * 7 6 5 33 33 H 1.08998 * 109.57612 * 62.28198 * 8 7 6 34 34 H 1.09003 * 109.47354 * 54.68187 * 9 8 7 35 35 H 1.08999 * 109.47657 * 174.68734 * 9 8 7 36 36 H 0.96993 * 120.00428 * 179.97438 * 13 12 10 37 37 H 1.09000 * 109.50734 * 297.71050 * 18 8 7 38 38 H 1.09004 * 109.53081 * 177.61230 * 18 8 7 39 39 H 1.09005 * 109.46269 * 305.85488 * 19 5 4 40 40 H 1.09001 * 109.46286 * 65.83561 * 19 5 4 41 41 H 1.08000 * 125.89824 * 179.75956 * 20 3 2 42 42 H 1.09000 * 109.47321 * 269.71793 * 23 22 2 43 43 H 1.08995 * 109.47229 * 29.71959 * 23 22 2 44 44 H 1.09007 * 109.46731 * 149.71827 * 23 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3049 1.0929 0.0000 4 6 1.8435 2.5275 0.0005 5 7 1.3443 2.8818 -1.3349 6 6 2.4473 2.9841 -2.2988 7 6 1.8805 3.2098 -3.7024 8 6 1.0492 4.4956 -3.7113 9 6 0.4298 4.6945 -5.0960 10 6 1.5232 4.9285 -6.1065 11 1 2.5565 4.9342 -5.7924 12 6 1.2045 5.1341 -7.4320 13 7 -0.0537 5.1256 -7.8148 14 14 2.5598 5.4234 -8.6846 15 1 3.8791 5.3847 -8.0041 16 1 2.5072 4.3644 -9.7243 17 1 2.3703 6.7516 -9.3210 18 6 -0.0629 4.3822 -2.6649 19 6 0.5602 4.1227 -1.2914 20 6 3.6335 0.6558 -0.0061 21 7 3.6333 -0.6526 -0.0039 22 7 2.3026 -1.0900 0.0036 23 6 1.8538 -2.4846 0.0087 24 1 -0.3633 -0.0874 1.0239 25 1 -0.3632 0.9305 -0.4363 26 1 -0.3633 -0.8430 -0.5877 27 1 1.0448 2.6520 0.7318 28 1 2.6788 3.1777 0.2605 29 1 3.0901 3.8217 -2.0278 30 1 3.0279 2.0618 -2.2857 31 1 1.2486 2.3659 -3.9796 32 1 2.6994 3.3009 -4.4159 33 1 1.6886 5.3455 -3.4727 34 1 -0.1359 3.8047 -5.3723 35 1 -0.2364 5.5569 -5.0757 36 1 -0.2780 5.2706 -8.7472 37 1 -0.7254 3.5569 -2.9257 38 1 -0.6325 5.3112 -2.6364 39 1 -0.2297 4.0273 -0.5463 40 1 1.2119 4.9549 -1.0253 41 1 4.5084 1.2889 -0.0113 42 1 1.7476 -2.8284 1.0376 43 1 0.8927 -2.5589 -0.5002 44 1 2.5871 -3.1042 -0.5076 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259902950.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:36 Heat of formation + Delta-G solvation = 59.703780 kcal Electronic energy + Delta-G solvation = -21864.176070 eV Core-core repulsion = 18817.272524 eV Total energy + Delta-G solvation = -3046.903546 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.31903 -38.53581 -34.79408 -33.46608 -32.62587 -31.61432 -30.27769 -28.79873 -27.02589 -26.73383 -24.66434 -23.06503 -22.39311 -20.85420 -20.58384 -19.21515 -18.80894 -16.49961 -16.22128 -15.89416 -15.28416 -14.76321 -14.43422 -14.41666 -13.92802 -13.54551 -13.40909 -13.25137 -12.94255 -12.88519 -12.59743 -12.44762 -12.20290 -11.97883 -11.86322 -11.64760 -11.46156 -11.08159 -10.74213 -10.64711 -10.54589 -10.39820 -10.20593 -9.86633 -9.46184 -9.25416 -8.97488 -8.81549 -8.31780 -8.27916 -7.93350 -5.93601 -3.94537 1.86439 2.47933 2.76816 3.34294 3.41916 3.45966 4.35899 4.43549 4.51118 4.67366 4.93278 5.00077 5.10346 5.21848 5.29649 5.35814 5.41958 5.42400 5.44364 5.58347 5.68551 5.73716 5.84671 5.87615 5.93458 6.01931 6.09393 6.22073 6.26805 6.35605 6.53011 6.64948 6.67245 6.76418 7.01577 7.07057 7.19191 7.27615 7.47657 7.52521 7.71678 7.75824 7.92979 8.07902 8.51569 9.12446 9.68820 11.17830 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.023030 B = 0.003775 C = 0.003589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1215.489928 B = 7415.651177 C = 7799.815025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C 0.107 3.893 3 C -0.228 4.228 4 C 0.134 3.866 5 N -0.532 5.532 6 C 0.061 3.939 7 C -0.098 4.098 8 C -0.081 4.081 9 C 0.028 3.972 10 C -0.512 4.512 11 H 0.055 0.945 12 C 0.055 3.945 13 N -0.897 5.897 14 Si 0.887 3.113 15 H -0.273 1.273 16 H -0.285 1.285 17 H -0.285 1.285 18 C -0.111 4.111 19 C 0.059 3.941 20 C 0.055 3.945 21 N -0.305 5.305 22 N -0.379 5.379 23 C 0.103 3.897 24 H 0.072 0.928 25 H 0.099 0.901 26 H 0.067 0.933 27 H 0.072 0.928 28 H 0.037 0.963 29 H 0.025 0.975 30 H 0.065 0.935 31 H 0.060 0.940 32 H 0.069 0.931 33 H 0.050 0.950 34 H 0.016 0.984 35 H 0.013 0.987 36 H 0.258 0.742 37 H 0.064 0.936 38 H 0.058 0.942 39 H 0.064 0.936 40 H 0.027 0.973 41 H 0.178 0.822 42 H 0.071 0.929 43 H 0.085 0.915 44 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.031 -10.674 18.882 21.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.021 4.021 3 C -0.240 4.240 4 C 0.005 3.995 5 N -0.257 5.257 6 C -0.067 4.067 7 C -0.136 4.136 8 C -0.100 4.100 9 C -0.009 4.009 10 C -0.550 4.550 11 H 0.073 0.927 12 C -0.145 4.145 13 N -0.537 5.537 14 Si 0.715 3.285 15 H -0.198 1.198 16 H -0.211 1.211 17 H -0.211 1.211 18 C -0.149 4.149 19 C -0.069 4.069 20 C -0.131 4.131 21 N -0.125 5.125 22 N -0.162 5.162 23 C -0.039 4.039 24 H 0.091 0.909 25 H 0.117 0.883 26 H 0.086 0.914 27 H 0.091 0.909 28 H 0.055 0.945 29 H 0.043 0.957 30 H 0.083 0.917 31 H 0.078 0.922 32 H 0.088 0.912 33 H 0.069 0.931 34 H 0.034 0.966 35 H 0.032 0.968 36 H 0.068 0.932 37 H 0.083 0.917 38 H 0.077 0.923 39 H 0.082 0.918 40 H 0.045 0.955 41 H 0.195 0.805 42 H 0.089 0.911 43 H 0.104 0.896 44 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 1.292 -12.243 18.572 22.282 hybrid contribution 0.843 1.453 -0.620 1.791 sum 2.135 -10.790 17.952 21.054 Atomic orbital electron populations 1.20478 0.87281 1.04927 1.02331 1.20827 0.94537 0.86697 1.00055 1.19668 0.91964 0.95295 1.17076 1.20232 0.98103 0.90230 0.90920 1.61952 1.24026 1.33497 1.06256 1.22137 0.91762 0.99401 0.93401 1.21524 1.00084 0.98400 0.93588 1.21225 0.95500 0.96175 0.97068 1.19118 0.95754 0.96823 0.89220 1.21313 0.93280 1.47855 0.92591 0.92673 1.25015 0.95194 0.95719 0.98585 1.69974 1.16578 1.50662 1.16456 0.86613 0.82505 0.77701 0.81655 1.19783 1.21119 1.21136 1.21677 0.98706 1.00997 0.93477 1.22108 0.96384 0.89756 0.98626 1.23728 0.97691 0.92056 0.99632 1.77322 0.96676 1.12952 1.25597 1.48369 1.04021 1.05892 1.57942 1.21782 1.01031 0.78141 1.02943 0.90944 0.88275 0.91439 0.90916 0.94466 0.95704 0.91676 0.92159 0.91197 0.93119 0.96593 0.96836 0.93211 0.91746 0.92300 0.91768 0.95509 0.80516 0.91085 0.89602 0.89495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.84 9.89 36.00 0.36 -0.48 16 2 C 0.11 1.27 6.93 -82.26 -0.57 0.70 16 3 C -0.23 -2.90 4.77 -105.06 -0.50 -3.40 16 4 C 0.13 1.62 4.90 -4.97 -0.02 1.59 16 5 N -0.53 -7.62 4.58 -236.11 -1.08 -8.71 16 6 C 0.06 0.97 5.30 -3.84 -0.02 0.95 16 7 C -0.10 -1.90 5.15 -26.65 -0.14 -2.04 16 8 C -0.08 -1.67 2.20 -90.50 -0.20 -1.87 16 9 C 0.03 0.72 4.45 -27.88 -0.12 0.60 16 10 C -0.51 -14.46 8.45 -34.44 -0.29 -14.75 16 11 H 0.06 1.52 7.08 -52.49 -0.37 1.15 16 12 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 13 N -0.90 -27.21 13.29 55.43 0.74 -26.48 16 14 Si 0.89 21.91 29.54 -169.99 -5.02 16.89 16 15 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 16 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 17 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 18 C -0.11 -1.90 5.38 -26.65 -0.14 -2.05 16 19 C 0.06 0.84 5.45 -3.84 -0.02 0.82 16 20 C 0.06 0.72 11.54 -17.37 -0.20 0.52 16 21 N -0.30 -4.29 12.58 30.62 0.39 -3.90 16 22 N -0.38 -4.58 4.01 -63.88 -0.26 -4.84 16 23 C 0.10 0.79 11.28 59.85 0.67 1.46 16 24 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 25 H 0.10 1.02 7.74 -51.93 -0.40 0.62 16 26 H 0.07 0.53 7.24 -51.93 -0.38 0.16 16 27 H 0.07 0.78 7.88 -51.93 -0.41 0.37 16 28 H 0.04 0.44 8.06 -51.93 -0.42 0.02 16 29 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 30 H 0.06 1.05 6.97 -51.93 -0.36 0.68 16 31 H 0.06 1.23 8.14 -51.92 -0.42 0.81 16 32 H 0.07 1.46 7.05 -51.93 -0.37 1.09 16 33 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 34 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 36 H 0.26 7.39 8.31 -40.82 -0.34 7.06 16 37 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 38 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 39 H 0.06 0.78 7.96 -51.93 -0.41 0.37 16 40 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 41 H 0.18 1.88 8.06 -52.49 -0.42 1.46 16 42 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 43 H 0.09 0.50 7.14 -51.93 -0.37 0.13 16 44 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 LS Contribution 349.51 15.07 5.27 5.27 Total: -1.00 -32.55 349.51 -8.97 -41.52 By element: Atomic # 1 Polarization: 4.39 SS G_CDS: -7.70 Total: -3.31 kcal Atomic # 6 Polarization: -15.15 SS G_CDS: -1.30 Total: -16.45 kcal Atomic # 7 Polarization: -43.70 SS G_CDS: -0.22 Total: -43.92 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -32.55 -8.97 -41.52 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259902950.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.221 kcal (2) G-P(sol) polarization free energy of solvation -32.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.517 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds