Wall clock time and date at job start Mon Mar 30 2020 02:31:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.35318 * 126.13506 * 2 1 4 4 C 1.50701 * 126.03429 * 0.02562 * 3 2 1 5 5 N 1.46904 * 109.47247 * 285.33945 * 4 3 2 6 6 C 1.46844 * 110.99523 * 288.78028 * 5 4 3 7 7 C 1.53038 * 109.52164 * 174.16219 * 6 5 4 8 8 C 1.53118 * 109.28142 * 59.17766 * 7 6 5 9 9 C 1.52995 * 109.52651 * 182.44571 * 8 7 6 10 10 C 1.50703 * 109.46919 * 294.68052 * 9 8 7 11 11 H 1.08001 * 119.99938 * 0.02562 * 10 9 8 12 12 C 1.37876 * 120.00217 * 179.97438 * 10 9 8 13 13 N 1.31517 * 120.00092 * 359.97438 * 12 10 9 14 14 Si 1.86805 * 120.00291 * 180.02562 * 12 10 9 15 15 H 1.48500 * 109.46641 * 359.97438 * 14 12 10 16 16 H 1.48497 * 109.47135 * 120.00109 * 14 12 10 17 17 H 1.48498 * 109.46730 * 239.99931 * 14 12 10 18 18 C 1.53121 * 109.15698 * 302.34785 * 8 7 6 19 19 C 1.46844 * 110.99958 * 164.57157 * 5 4 3 20 20 C 1.39861 * 107.92302 * 180.26266 * 3 2 1 21 21 N 1.30835 * 108.20461 * 359.73648 * 20 3 2 22 22 N 1.34950 * 126.12477 * 179.81212 * 2 1 3 23 23 C 1.46506 * 126.03560 * 359.97438 * 22 2 1 24 24 H 1.08999 * 109.46884 * 265.12385 * 1 2 3 25 25 H 1.09000 * 109.46512 * 25.12073 * 1 2 3 26 26 H 1.08998 * 109.47236 * 145.12043 * 1 2 3 27 27 H 1.09003 * 109.47425 * 45.33760 * 4 3 2 28 28 H 1.08999 * 109.46961 * 165.33764 * 4 3 2 29 29 H 1.09003 * 109.46667 * 294.17327 * 6 5 4 30 30 H 1.08996 * 109.46660 * 54.14941 * 6 5 4 31 31 H 1.09007 * 109.49917 * 299.23923 * 7 6 5 32 32 H 1.08998 * 109.53933 * 179.14300 * 7 6 5 33 33 H 1.08998 * 109.57612 * 62.28198 * 8 7 6 34 34 H 1.09003 * 109.47354 * 54.68187 * 9 8 7 35 35 H 1.08999 * 109.47657 * 174.68734 * 9 8 7 36 36 H 0.96993 * 120.00428 * 179.97438 * 13 12 10 37 37 H 1.09000 * 109.50734 * 297.71050 * 18 8 7 38 38 H 1.09004 * 109.53081 * 177.61230 * 18 8 7 39 39 H 1.09005 * 109.46269 * 305.85488 * 19 5 4 40 40 H 1.09001 * 109.46286 * 65.83561 * 19 5 4 41 41 H 1.08000 * 125.89824 * 179.75956 * 20 3 2 42 42 H 1.09000 * 109.47321 * 269.71793 * 23 22 2 43 43 H 1.08995 * 109.47229 * 29.71959 * 23 22 2 44 44 H 1.09007 * 109.46731 * 149.71827 * 23 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3049 1.0929 0.0000 4 6 1.8435 2.5275 0.0005 5 7 1.3443 2.8818 -1.3349 6 6 2.4473 2.9841 -2.2988 7 6 1.8805 3.2098 -3.7024 8 6 1.0492 4.4956 -3.7113 9 6 0.4298 4.6945 -5.0960 10 6 1.5232 4.9285 -6.1065 11 1 2.5565 4.9342 -5.7924 12 6 1.2045 5.1341 -7.4320 13 7 -0.0537 5.1256 -7.8148 14 14 2.5598 5.4234 -8.6846 15 1 3.8791 5.3847 -8.0041 16 1 2.5072 4.3644 -9.7243 17 1 2.3703 6.7516 -9.3210 18 6 -0.0629 4.3822 -2.6649 19 6 0.5602 4.1227 -1.2914 20 6 3.6335 0.6558 -0.0061 21 7 3.6333 -0.6526 -0.0039 22 7 2.3026 -1.0900 0.0036 23 6 1.8538 -2.4846 0.0087 24 1 -0.3633 -0.0874 1.0239 25 1 -0.3632 0.9305 -0.4363 26 1 -0.3633 -0.8430 -0.5877 27 1 1.0448 2.6520 0.7318 28 1 2.6788 3.1777 0.2605 29 1 3.0901 3.8217 -2.0278 30 1 3.0279 2.0618 -2.2857 31 1 1.2486 2.3659 -3.9796 32 1 2.6994 3.3009 -4.4159 33 1 1.6886 5.3455 -3.4727 34 1 -0.1359 3.8047 -5.3723 35 1 -0.2364 5.5569 -5.0757 36 1 -0.2780 5.2706 -8.7472 37 1 -0.7254 3.5569 -2.9257 38 1 -0.6325 5.3112 -2.6364 39 1 -0.2297 4.0273 -0.5463 40 1 1.2119 4.9549 -1.0253 41 1 4.5084 1.2889 -0.0113 42 1 1.7476 -2.8284 1.0376 43 1 0.8927 -2.5589 -0.5002 44 1 2.5871 -3.1042 -0.5076 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259902950.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:36 Heat of formation + Delta-G solvation = 39.620435 kcal Electronic energy + Delta-G solvation = -21865.046949 eV Core-core repulsion = 18817.272524 eV Total energy + Delta-G solvation = -3047.774425 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.20058 -39.87042 -36.31684 -34.60088 -34.13248 -32.81456 -31.63278 -30.18749 -28.38901 -27.47805 -26.12202 -24.56873 -23.76822 -22.15722 -21.71996 -20.37900 -20.08350 -18.41622 -17.32986 -16.94905 -16.53260 -16.23846 -15.86531 -15.34635 -15.05151 -14.98007 -14.77273 -14.33869 -14.09915 -13.85741 -13.77829 -13.56168 -13.31357 -13.20914 -13.04458 -12.93483 -12.80489 -12.61584 -12.55802 -12.29867 -12.09579 -11.94831 -11.62165 -11.39784 -11.21000 -10.83209 -10.65596 -10.50949 -10.11695 -9.24534 -9.03021 -8.16627 -6.25726 0.99120 1.38770 1.39266 1.52154 1.72439 1.83611 2.42023 3.16065 3.24019 3.69540 3.90860 4.10464 4.13458 4.14133 4.26312 4.38007 4.41035 4.43198 4.51147 4.56119 4.67510 4.70802 4.74029 4.81747 4.83495 4.86815 4.92988 5.04064 5.05047 5.18757 5.21225 5.22694 5.38362 5.43628 5.47649 5.48719 5.61488 5.75870 5.84570 5.92557 6.22671 6.28057 6.33761 6.39504 6.81453 6.90742 7.42474 8.95426 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.023030 B = 0.003775 C = 0.003589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1215.489928 B = 7415.651177 C = 7799.815025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C 0.103 3.897 3 C -0.248 4.248 4 C 0.140 3.860 5 N -0.538 5.538 6 C 0.075 3.925 7 C -0.091 4.091 8 C -0.074 4.074 9 C 0.034 3.966 10 C -0.529 4.529 11 H 0.058 0.942 12 C -0.002 4.002 13 N -0.935 5.935 14 Si 0.958 3.042 15 H -0.263 1.263 16 H -0.280 1.280 17 H -0.278 1.278 18 C -0.105 4.105 19 C 0.067 3.933 20 C 0.045 3.955 21 N -0.340 5.340 22 N -0.384 5.384 23 C 0.093 3.907 24 H 0.095 0.905 25 H 0.089 0.911 26 H 0.079 0.921 27 H 0.092 0.908 28 H 0.043 0.957 29 H 0.030 0.970 30 H 0.065 0.935 31 H 0.043 0.957 32 H 0.048 0.952 33 H 0.047 0.953 34 H -0.013 1.013 35 H -0.013 1.013 36 H 0.262 0.738 37 H 0.055 0.945 38 H 0.062 0.938 39 H 0.095 0.905 40 H 0.032 0.968 41 H 0.191 0.809 42 H 0.089 0.911 43 H 0.106 0.894 44 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.371 -11.053 20.419 23.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.026 4.026 3 C -0.259 4.259 4 C 0.012 3.988 5 N -0.263 5.263 6 C -0.053 4.053 7 C -0.129 4.129 8 C -0.093 4.093 9 C -0.003 4.003 10 C -0.567 4.567 11 H 0.076 0.924 12 C -0.199 4.199 13 N -0.576 5.576 14 Si 0.783 3.217 15 H -0.187 1.187 16 H -0.206 1.206 17 H -0.204 1.204 18 C -0.143 4.143 19 C -0.061 4.061 20 C -0.140 4.140 21 N -0.161 5.161 22 N -0.167 5.167 23 C -0.047 4.047 24 H 0.113 0.887 25 H 0.108 0.892 26 H 0.097 0.903 27 H 0.111 0.889 28 H 0.062 0.938 29 H 0.048 0.952 30 H 0.084 0.916 31 H 0.062 0.938 32 H 0.067 0.933 33 H 0.065 0.935 34 H 0.005 0.995 35 H 0.005 0.995 36 H 0.070 0.930 37 H 0.074 0.926 38 H 0.080 0.920 39 H 0.113 0.887 40 H 0.051 0.949 41 H 0.207 0.793 42 H 0.107 0.893 43 H 0.124 0.876 44 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 1.641 -12.636 20.130 23.824 hybrid contribution 0.675 1.516 -1.103 1.993 sum 2.316 -11.120 19.027 22.159 Atomic orbital electron populations 1.20535 0.85298 1.04905 1.03883 1.21320 0.95812 0.86598 0.98851 1.19834 0.91998 0.95872 1.18243 1.20240 0.98956 0.89957 0.89608 1.61898 1.23444 1.33561 1.07354 1.21875 0.92145 0.99569 0.91672 1.21380 0.98843 0.96981 0.95706 1.21078 0.96521 0.96623 0.95038 1.19009 0.94806 0.94173 0.92308 1.21696 0.93890 1.47574 0.93505 0.92419 1.25930 0.97663 0.95396 1.00876 1.70104 1.18762 1.51599 1.17115 0.85497 0.79610 0.77767 0.78797 1.18719 1.20574 1.20385 1.21587 0.97419 1.00928 0.94398 1.22046 0.97159 0.89907 0.96954 1.24043 0.98580 0.92073 0.99335 1.77254 0.98271 1.13634 1.26990 1.48718 1.03444 1.07319 1.57247 1.22108 1.01878 0.76275 1.04479 0.88701 0.89240 0.90269 0.88933 0.93830 0.95191 0.91616 0.93830 0.93334 0.93494 0.99497 0.99459 0.92964 0.92629 0.91968 0.88667 0.94940 0.79264 0.89267 0.87592 0.89501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.36 9.89 71.24 0.70 -0.65 16 2 C 0.10 2.25 6.93 41.40 0.29 2.54 16 3 C -0.25 -5.83 4.77 -20.15 -0.10 -5.93 16 4 C 0.14 3.00 4.90 85.56 0.42 3.42 16 5 N -0.54 -14.24 4.58 -900.92 -4.13 -18.37 16 6 C 0.08 2.34 5.30 86.33 0.46 2.80 16 7 C -0.09 -3.58 5.15 30.65 0.16 -3.42 16 8 C -0.07 -3.09 2.20 -10.72 -0.02 -3.11 16 9 C 0.03 1.83 4.45 29.85 0.13 1.97 16 10 C -0.53 -30.55 8.45 25.60 0.22 -30.34 16 11 H 0.06 3.23 7.08 -2.91 -0.02 3.21 16 12 C 0.00 -0.09 5.46 84.65 0.46 0.37 16 13 N -0.93 -58.00 13.29 21.45 0.28 -57.72 16 14 Si 0.96 45.32 29.54 68.60 2.03 47.34 16 15 H -0.26 -11.91 7.11 99.48 0.71 -11.20 16 16 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 17 H -0.28 -12.78 7.11 99.48 0.71 -12.08 16 18 C -0.11 -3.55 5.38 30.65 0.16 -3.39 16 19 C 0.07 1.72 5.45 86.33 0.47 2.19 16 20 C 0.04 1.12 11.54 85.23 0.98 2.10 16 21 N -0.34 -9.30 12.58 -57.03 -0.72 -10.02 16 22 N -0.38 -8.69 4.01 -356.01 -1.43 -10.12 16 23 C 0.09 1.25 11.28 127.77 1.44 2.69 16 24 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 25 H 0.09 1.60 7.74 -2.39 -0.02 1.58 16 26 H 0.08 1.03 7.24 -2.39 -0.02 1.01 16 27 H 0.09 1.63 7.88 -2.39 -0.02 1.61 16 28 H 0.04 0.90 8.06 -2.39 -0.02 0.88 16 29 H 0.03 0.91 8.14 -2.39 -0.02 0.89 16 30 H 0.07 2.05 6.97 -2.39 -0.02 2.03 16 31 H 0.04 1.82 8.14 -2.38 -0.02 1.80 16 32 H 0.05 2.07 7.05 -2.39 -0.02 2.05 16 33 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 34 H -0.01 -0.79 8.14 -2.39 -0.02 -0.81 16 35 H -0.01 -0.75 8.14 -2.39 -0.02 -0.77 16 36 H 0.26 15.22 8.31 -92.71 -0.77 14.45 16 37 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 38 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 39 H 0.10 1.94 7.96 -2.38 -0.02 1.92 16 40 H 0.03 0.83 8.14 -2.39 -0.02 0.81 16 41 H 0.19 3.87 8.06 -2.91 -0.02 3.84 16 42 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 43 H 0.11 0.97 7.14 -2.39 -0.02 0.95 16 44 H 0.09 1.16 8.14 -2.38 -0.02 1.14 16 Total: -1.00 -71.52 349.51 2.76 -68.75 By element: Atomic # 1 Polarization: 7.93 SS G_CDS: 0.95 Total: 8.88 kcal Atomic # 6 Polarization: -34.53 SS G_CDS: 5.78 Total: -28.76 kcal Atomic # 7 Polarization: -90.23 SS G_CDS: -5.99 Total: -96.22 kcal Atomic # 14 Polarization: 45.32 SS G_CDS: 2.03 Total: 47.34 kcal Total: -71.52 2.76 -68.75 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259902950.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.375 kcal (2) G-P(sol) polarization free energy of solvation -71.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.754 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds