Wall clock time and date at job start Mon Mar 30 2020 02:34:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.30839 * 125.90371 * 2 1 4 4 N 1.40079 * 108.20849 * 180.02562 * 3 2 1 5 5 H 0.96997 * 126.03520 * 179.97438 * 4 3 2 6 6 C 1.34948 * 107.92564 * 0.02562 * 4 3 2 7 7 C 1.50699 * 126.12278 * 180.27075 * 6 4 3 8 8 C 1.35315 * 107.74520 * 359.97438 * 6 4 3 9 9 C 1.50699 * 126.03644 * 180.02562 * 8 6 4 10 10 N 1.46892 * 109.47290 * 90.00268 * 9 8 6 11 11 C 1.46846 * 111.00047 * 45.78993 * 10 9 8 12 12 C 1.53039 * 109.52640 * 185.84040 * 11 10 9 13 13 C 1.53115 * 109.27739 * 300.82125 * 12 11 10 14 14 C 1.53001 * 109.52470 * 177.55658 * 13 12 11 15 15 C 1.50696 * 109.46953 * 65.31617 * 14 13 12 16 16 H 1.08000 * 120.00003 * 359.97438 * 15 14 13 17 17 C 1.37882 * 120.00236 * 180.02562 * 15 14 13 18 18 N 1.31510 * 119.99650 * 359.97438 * 17 15 14 19 19 Si 1.86797 * 120.00094 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.47247 * 0.02562 * 19 17 15 21 21 H 1.48503 * 109.47210 * 120.00331 * 19 17 15 22 22 H 1.48500 * 109.47206 * 239.99728 * 19 17 15 23 23 C 1.53118 * 109.16320 * 57.65334 * 13 12 11 24 24 C 1.46850 * 111.00186 * 169.99880 * 10 9 8 25 25 H 1.09001 * 109.46842 * 269.95735 * 1 2 3 26 26 H 1.09001 * 109.47172 * 29.95797 * 1 2 3 27 27 H 1.08999 * 109.47466 * 149.95424 * 1 2 3 28 28 H 1.09006 * 109.46685 * 269.67839 * 7 6 4 29 29 H 1.08999 * 109.47681 * 29.68011 * 7 6 4 30 30 H 1.09000 * 109.47202 * 149.68333 * 7 6 4 31 31 H 1.08998 * 109.46717 * 210.00416 * 9 8 6 32 32 H 1.09006 * 109.47452 * 329.99857 * 9 8 6 33 33 H 1.09001 * 109.46173 * 305.85306 * 11 10 9 34 34 H 1.09000 * 109.46601 * 65.82530 * 11 10 9 35 35 H 1.08993 * 109.50830 * 180.87602 * 12 11 10 36 36 H 1.09008 * 109.50338 * 60.75883 * 12 11 10 37 37 H 1.08999 * 109.52427 * 297.74961 * 13 12 11 38 38 H 1.08997 * 109.47131 * 185.31344 * 14 13 12 39 39 H 1.08998 * 109.46893 * 305.31655 * 14 13 12 40 40 H 0.96998 * 120.00053 * 179.97438 * 18 17 15 41 41 H 1.08996 * 109.50577 * 182.40910 * 23 13 12 42 42 H 1.09000 * 109.53590 * 62.30604 * 23 13 12 43 43 H 1.08996 * 109.46056 * 294.17838 * 24 10 9 44 44 H 1.08998 * 109.45846 * 54.15472 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2742 1.0598 0.0000 4 7 3.6087 0.6340 -0.0006 5 1 4.3908 1.2078 -0.0011 6 6 3.6142 -0.7154 -0.0015 7 6 4.8350 -1.5989 0.0033 8 6 2.3271 -1.1330 -0.0009 9 6 1.8599 -2.5658 -0.0011 10 7 1.7087 -3.0317 1.3838 11 6 0.9999 -2.0372 2.1992 12 6 0.9888 -2.4887 3.6614 13 6 0.2946 -3.8495 3.7650 14 6 0.3341 -4.3346 5.2155 15 6 -0.4867 -3.4099 6.0770 16 1 -0.9863 -2.5609 5.6343 17 6 -0.5992 -3.6472 7.4306 18 7 0.0096 -4.6807 7.9697 19 14 -1.6161 -2.5005 8.4985 20 1 -2.1943 -1.4227 7.6564 21 1 -2.7128 -3.2669 9.1428 22 1 -0.7500 -1.9009 9.5452 23 6 1.0233 -4.8550 2.8692 24 6 1.0334 -4.3348 1.4299 25 1 -0.3633 -0.0008 1.0277 26 1 -0.3633 0.8904 -0.5132 27 1 -0.3634 -0.8895 -0.5145 28 1 5.1305 -1.8159 -1.0232 29 1 5.6505 -1.0891 0.5162 30 1 4.6069 -2.5310 0.5204 31 1 0.9009 -2.6351 -0.5145 32 1 2.5931 -3.1871 -0.5155 33 1 1.5063 -1.0752 2.1201 34 1 -0.0251 -1.9384 1.8419 35 1 0.4492 -1.7581 4.2639 36 1 2.0134 -2.5744 4.0237 37 1 -0.7414 -3.7556 3.4394 38 1 -0.0752 -5.3432 5.2726 39 1 1.3653 -4.3404 5.5687 40 1 -0.0692 -4.8475 8.9220 41 1 0.5082 -5.8149 2.9056 42 1 2.0483 -4.9785 3.2187 43 1 0.0083 -4.2253 1.0761 44 1 1.5641 -5.0417 0.7921 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260142730.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:29 Heat of formation + Delta-G solvation = 49.861398 kcal Electronic energy + Delta-G solvation = -22180.598142 eV Core-core repulsion = 19133.267799 eV Total energy + Delta-G solvation = -3047.330344 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.50590 -38.52291 -34.77546 -33.47252 -32.60810 -31.37471 -30.17148 -28.85117 -27.70058 -27.02193 -24.93321 -23.11047 -22.45602 -20.66939 -20.12943 -19.18351 -18.77965 -17.32479 -16.22529 -15.90677 -14.84042 -14.68417 -14.42650 -14.23977 -13.82488 -13.54299 -13.41828 -13.20642 -13.03665 -12.67894 -12.47483 -12.36185 -12.24029 -11.96649 -11.89950 -11.67306 -11.36926 -11.09067 -10.72293 -10.64937 -10.53328 -10.41185 -10.18695 -9.85671 -9.46329 -9.26819 -8.95627 -8.80675 -8.49787 -8.27638 -7.85650 -5.93095 -3.93932 1.80632 2.62103 2.79502 3.34549 3.42214 3.46204 4.38687 4.51528 4.57244 4.61349 4.93777 5.18619 5.24836 5.31568 5.36978 5.42632 5.46497 5.55298 5.57429 5.67873 5.73257 5.75736 5.86184 5.90016 5.95625 6.03637 6.11549 6.18595 6.25603 6.38025 6.53643 6.61943 6.68438 6.77607 7.07457 7.19659 7.22965 7.28477 7.47588 7.53760 7.65527 7.76518 7.93757 8.08520 8.52207 9.13034 9.69349 11.18375 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.021389 B = 0.004214 C = 0.003921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1308.797032 B = 6643.670517 C = 7139.316250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.089 3.911 3 N -0.300 5.300 4 N -0.480 5.480 5 H 0.436 0.564 6 C 0.105 3.895 7 C -0.094 4.094 8 C -0.230 4.230 9 C 0.133 3.867 10 N -0.531 5.531 11 C 0.058 3.942 12 C -0.099 4.099 13 C -0.081 4.081 14 C 0.028 3.972 15 C -0.512 4.512 16 H 0.055 0.945 17 C 0.055 3.945 18 N -0.897 5.897 19 Si 0.887 3.113 20 H -0.273 1.273 21 H -0.285 1.285 22 H -0.285 1.285 23 C -0.111 4.111 24 C 0.059 3.941 25 H 0.082 0.918 26 H 0.071 0.929 27 H 0.075 0.925 28 H 0.076 0.924 29 H 0.068 0.932 30 H 0.096 0.904 31 H 0.036 0.964 32 H 0.075 0.925 33 H 0.068 0.932 34 H 0.026 0.974 35 H 0.069 0.931 36 H 0.059 0.941 37 H 0.050 0.950 38 H 0.013 0.987 39 H 0.016 0.984 40 H 0.258 0.742 41 H 0.059 0.941 42 H 0.064 0.936 43 H 0.027 0.973 44 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.109 5.684 -19.194 21.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.078 4.078 3 N -0.123 5.123 4 N -0.189 5.189 5 H 0.279 0.721 6 C -0.024 4.024 7 C -0.152 4.152 8 C -0.241 4.241 9 C 0.005 3.995 10 N -0.256 5.256 11 C -0.070 4.070 12 C -0.137 4.137 13 C -0.099 4.099 14 C -0.009 4.009 15 C -0.550 4.550 16 H 0.073 0.927 17 C -0.145 4.145 18 N -0.537 5.537 19 Si 0.715 3.285 20 H -0.198 1.198 21 H -0.211 1.211 22 H -0.211 1.211 23 C -0.149 4.149 24 C -0.069 4.069 25 H 0.101 0.899 26 H 0.090 0.910 27 H 0.094 0.906 28 H 0.095 0.905 29 H 0.087 0.913 30 H 0.115 0.885 31 H 0.054 0.946 32 H 0.093 0.907 33 H 0.086 0.914 34 H 0.044 0.956 35 H 0.087 0.913 36 H 0.078 0.922 37 H 0.069 0.931 38 H 0.032 0.968 39 H 0.034 0.966 40 H 0.068 0.932 41 H 0.077 0.923 42 H 0.083 0.917 43 H 0.045 0.955 44 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 7.612 6.796 -18.833 21.420 hybrid contribution -0.883 0.209 0.442 1.009 sum 6.730 7.005 -18.390 20.798 Atomic orbital electron populations 1.20312 0.86954 1.02974 1.03505 1.22203 0.96837 0.90319 0.98459 1.77268 0.86501 1.22285 1.26248 1.46123 1.07222 1.04902 1.60603 0.72087 1.20867 0.97035 0.84650 0.99829 1.20496 0.92566 0.99196 1.02990 1.19555 0.91273 0.95886 1.17383 1.20297 0.99093 0.89952 0.90200 1.62082 1.51521 1.03067 1.08965 1.22272 0.95235 0.94851 0.94597 1.21546 1.01065 0.98007 0.93101 1.21225 0.97083 0.93591 0.98038 1.19118 0.97062 0.96100 0.88646 1.21307 1.29999 1.11047 0.92639 0.92688 1.25011 0.95919 0.95359 0.98206 1.69974 1.43778 1.28171 1.11740 0.86619 0.80172 0.81069 0.80647 1.19787 1.21134 1.21129 1.21674 1.01401 0.98565 0.93223 1.22101 0.95856 0.90436 0.98470 0.89933 0.91027 0.90623 0.90511 0.91270 0.88503 0.94620 0.90708 0.91390 0.95579 0.91270 0.92210 0.93130 0.96829 0.96595 0.93217 0.92280 0.91717 0.95467 0.91756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.88 9.20 36.00 0.33 -0.55 16 2 C 0.09 1.18 5.87 -82.41 -0.48 0.69 16 3 N -0.30 -4.14 12.70 33.67 0.43 -3.71 16 4 N -0.48 -5.34 7.36 33.48 0.25 -5.09 16 5 H 0.44 3.42 8.96 -182.62 -1.64 1.78 16 6 C 0.11 1.17 7.21 -82.26 -0.59 0.58 16 7 C -0.09 -0.75 10.04 36.01 0.36 -0.39 16 8 C -0.23 -2.88 4.19 -105.05 -0.44 -3.32 16 9 C 0.13 1.60 5.18 -4.98 -0.03 1.58 16 10 N -0.53 -7.67 4.80 -236.12 -1.13 -8.81 16 11 C 0.06 0.93 4.01 -3.83 -0.02 0.92 16 12 C -0.10 -1.94 5.15 -26.65 -0.14 -2.07 16 13 C -0.08 -1.67 2.20 -90.50 -0.20 -1.87 16 14 C 0.03 0.72 4.45 -27.88 -0.12 0.59 16 15 C -0.51 -14.45 8.45 -34.44 -0.29 -14.74 16 16 H 0.05 1.52 7.08 -52.49 -0.37 1.15 16 17 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 18 N -0.90 -27.23 13.29 55.43 0.74 -26.50 16 19 Si 0.89 21.92 29.54 -169.99 -5.02 16.90 16 20 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 21 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 22 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 23 C -0.11 -1.92 5.38 -26.65 -0.14 -2.07 16 24 C 0.06 0.85 5.42 -3.83 -0.02 0.83 16 25 H 0.08 0.96 7.13 -51.93 -0.37 0.59 16 26 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.07 0.75 7.26 -51.93 -0.38 0.38 16 28 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 29 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 30 H 0.10 0.87 7.78 -51.93 -0.40 0.46 16 31 H 0.04 0.42 7.19 -51.93 -0.37 0.04 16 32 H 0.07 0.79 7.78 -51.93 -0.40 0.39 16 33 H 0.07 1.12 5.65 -51.93 -0.29 0.83 16 34 H 0.03 0.41 6.98 -51.93 -0.36 0.05 16 35 H 0.07 1.45 7.05 -51.93 -0.37 1.08 16 36 H 0.06 1.23 8.14 -51.92 -0.42 0.80 16 37 H 0.05 1.07 8.14 -51.93 -0.42 0.64 16 38 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 39 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 41 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 42 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 43 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 44 H 0.06 0.80 8.12 -51.93 -0.42 0.38 16 LS Contribution 341.93 15.07 5.15 5.15 Total: -1.00 -32.26 341.93 -10.21 -42.47 By element: Atomic # 1 Polarization: 6.63 SS G_CDS: -8.74 Total: -2.12 kcal Atomic # 6 Polarization: -16.42 SS G_CDS: -1.88 Total: -18.30 kcal Atomic # 7 Polarization: -44.39 SS G_CDS: 0.28 Total: -44.11 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -32.26 -10.21 -42.47 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260142730.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.335 kcal (2) G-P(sol) polarization free energy of solvation -32.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.474 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds