Wall clock time and date at job start Mon Mar 30 2020 02:34:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.30839 * 125.90371 * 2 1 4 4 N 1.40079 * 108.20849 * 180.02562 * 3 2 1 5 5 H 0.96997 * 126.03520 * 179.97438 * 4 3 2 6 6 C 1.34948 * 107.92564 * 0.02562 * 4 3 2 7 7 C 1.50699 * 126.12278 * 180.27075 * 6 4 3 8 8 C 1.35315 * 107.74520 * 359.97438 * 6 4 3 9 9 C 1.50699 * 126.03644 * 180.02562 * 8 6 4 10 10 N 1.46892 * 109.47290 * 90.00268 * 9 8 6 11 11 C 1.46846 * 111.00047 * 45.78993 * 10 9 8 12 12 C 1.53039 * 109.52640 * 185.84040 * 11 10 9 13 13 C 1.53115 * 109.27739 * 300.82125 * 12 11 10 14 14 C 1.53001 * 109.52470 * 177.55658 * 13 12 11 15 15 C 1.50696 * 109.46953 * 65.31617 * 14 13 12 16 16 H 1.08000 * 120.00003 * 359.97438 * 15 14 13 17 17 C 1.37882 * 120.00236 * 180.02562 * 15 14 13 18 18 N 1.31510 * 119.99650 * 359.97438 * 17 15 14 19 19 Si 1.86797 * 120.00094 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.47247 * 0.02562 * 19 17 15 21 21 H 1.48503 * 109.47210 * 120.00331 * 19 17 15 22 22 H 1.48500 * 109.47206 * 239.99728 * 19 17 15 23 23 C 1.53118 * 109.16320 * 57.65334 * 13 12 11 24 24 C 1.46850 * 111.00186 * 169.99880 * 10 9 8 25 25 H 1.09001 * 109.46842 * 269.95735 * 1 2 3 26 26 H 1.09001 * 109.47172 * 29.95797 * 1 2 3 27 27 H 1.08999 * 109.47466 * 149.95424 * 1 2 3 28 28 H 1.09006 * 109.46685 * 269.67839 * 7 6 4 29 29 H 1.08999 * 109.47681 * 29.68011 * 7 6 4 30 30 H 1.09000 * 109.47202 * 149.68333 * 7 6 4 31 31 H 1.08998 * 109.46717 * 210.00416 * 9 8 6 32 32 H 1.09006 * 109.47452 * 329.99857 * 9 8 6 33 33 H 1.09001 * 109.46173 * 305.85306 * 11 10 9 34 34 H 1.09000 * 109.46601 * 65.82530 * 11 10 9 35 35 H 1.08993 * 109.50830 * 180.87602 * 12 11 10 36 36 H 1.09008 * 109.50338 * 60.75883 * 12 11 10 37 37 H 1.08999 * 109.52427 * 297.74961 * 13 12 11 38 38 H 1.08997 * 109.47131 * 185.31344 * 14 13 12 39 39 H 1.08998 * 109.46893 * 305.31655 * 14 13 12 40 40 H 0.96998 * 120.00053 * 179.97438 * 18 17 15 41 41 H 1.08996 * 109.50577 * 182.40910 * 23 13 12 42 42 H 1.09000 * 109.53590 * 62.30604 * 23 13 12 43 43 H 1.08996 * 109.46056 * 294.17838 * 24 10 9 44 44 H 1.08998 * 109.45846 * 54.15472 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2742 1.0598 0.0000 4 7 3.6087 0.6340 -0.0006 5 1 4.3908 1.2078 -0.0011 6 6 3.6142 -0.7154 -0.0015 7 6 4.8350 -1.5989 0.0033 8 6 2.3271 -1.1330 -0.0009 9 6 1.8599 -2.5658 -0.0011 10 7 1.7087 -3.0317 1.3838 11 6 0.9999 -2.0372 2.1992 12 6 0.9888 -2.4887 3.6614 13 6 0.2946 -3.8495 3.7650 14 6 0.3341 -4.3346 5.2155 15 6 -0.4867 -3.4099 6.0770 16 1 -0.9863 -2.5609 5.6343 17 6 -0.5992 -3.6472 7.4306 18 7 0.0096 -4.6807 7.9697 19 14 -1.6161 -2.5005 8.4985 20 1 -2.1943 -1.4227 7.6564 21 1 -2.7128 -3.2669 9.1428 22 1 -0.7500 -1.9009 9.5452 23 6 1.0233 -4.8550 2.8692 24 6 1.0334 -4.3348 1.4299 25 1 -0.3633 -0.0008 1.0277 26 1 -0.3633 0.8904 -0.5132 27 1 -0.3634 -0.8895 -0.5145 28 1 5.1305 -1.8159 -1.0232 29 1 5.6505 -1.0891 0.5162 30 1 4.6069 -2.5310 0.5204 31 1 0.9009 -2.6351 -0.5145 32 1 2.5931 -3.1871 -0.5155 33 1 1.5063 -1.0752 2.1201 34 1 -0.0251 -1.9384 1.8419 35 1 0.4492 -1.7581 4.2639 36 1 2.0134 -2.5744 4.0237 37 1 -0.7414 -3.7556 3.4394 38 1 -0.0752 -5.3432 5.2726 39 1 1.3653 -4.3404 5.5687 40 1 -0.0692 -4.8475 8.9220 41 1 0.5082 -5.8149 2.9056 42 1 2.0483 -4.9785 3.2187 43 1 0.0083 -4.2253 1.0761 44 1 1.5641 -5.0417 0.7921 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260142730.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:29 Heat of formation + Delta-G solvation = 28.885656 kcal Electronic energy + Delta-G solvation = -22181.507719 eV Core-core repulsion = 19133.267799 eV Total energy + Delta-G solvation = -3048.239920 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.39670 -39.85499 -36.32797 -34.52200 -34.26155 -32.60805 -31.51877 -30.13512 -28.88465 -28.06939 -26.35920 -24.69343 -23.82209 -22.20114 -21.06361 -20.41905 -20.01792 -18.41905 -18.18362 -17.06633 -16.48545 -15.91802 -15.74571 -15.33663 -14.98470 -14.79996 -14.71155 -14.29355 -14.08983 -13.97398 -13.86931 -13.42580 -13.26545 -13.18099 -13.06447 -12.91196 -12.86053 -12.59357 -12.51409 -12.34877 -12.08107 -11.92979 -11.61047 -11.39977 -11.20158 -10.82764 -10.64543 -10.50843 -10.16343 -9.43566 -8.94711 -8.16365 -6.25341 0.94064 1.38763 1.39304 1.52136 1.69262 2.01357 2.42177 3.16455 3.25914 3.73985 3.81374 4.11073 4.13227 4.13899 4.23118 4.35078 4.39873 4.51952 4.60845 4.69188 4.71199 4.75764 4.80449 4.83889 4.87396 4.92142 5.00481 5.06356 5.10287 5.19913 5.20945 5.21728 5.34652 5.43406 5.47819 5.48809 5.61593 5.73918 5.84754 5.92647 6.27459 6.33813 6.38898 6.48179 6.76881 6.91051 7.42798 8.95765 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.021389 B = 0.004214 C = 0.003921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1308.797032 B = 6643.670517 C = 7139.316250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.077 3.923 3 N -0.334 5.334 4 N -0.476 5.476 5 H 0.447 0.553 6 C 0.111 3.889 7 C -0.091 4.091 8 C -0.254 4.254 9 C 0.138 3.862 10 N -0.538 5.538 11 C 0.076 3.924 12 C -0.093 4.093 13 C -0.073 4.073 14 C 0.034 3.966 15 C -0.528 4.528 16 H 0.057 0.943 17 C -0.001 4.001 18 N -0.935 5.935 19 Si 0.958 3.042 20 H -0.263 1.263 21 H -0.278 1.278 22 H -0.280 1.280 23 C -0.106 4.106 24 C 0.066 3.934 25 H 0.074 0.926 26 H 0.078 0.922 27 H 0.087 0.913 28 H 0.099 0.901 29 H 0.083 0.917 30 H 0.089 0.911 31 H 0.044 0.956 32 H 0.095 0.905 33 H 0.065 0.935 34 H 0.032 0.968 35 H 0.047 0.953 36 H 0.042 0.958 37 H 0.047 0.953 38 H -0.013 1.013 39 H -0.014 1.014 40 H 0.261 0.739 41 H 0.062 0.938 42 H 0.054 0.946 43 H 0.034 0.966 44 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.302 6.161 -20.919 22.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.089 4.089 3 N -0.158 5.158 4 N -0.185 5.185 5 H 0.293 0.707 6 C -0.019 4.019 7 C -0.149 4.149 8 C -0.265 4.265 9 C 0.011 3.989 10 N -0.263 5.263 11 C -0.052 4.052 12 C -0.131 4.131 13 C -0.092 4.092 14 C -0.003 4.003 15 C -0.566 4.566 16 H 0.076 0.924 17 C -0.198 4.198 18 N -0.576 5.576 19 Si 0.783 3.217 20 H -0.187 1.187 21 H -0.204 1.204 22 H -0.206 1.206 23 C -0.144 4.144 24 C -0.061 4.061 25 H 0.092 0.908 26 H 0.097 0.903 27 H 0.106 0.894 28 H 0.118 0.882 29 H 0.102 0.898 30 H 0.108 0.892 31 H 0.062 0.938 32 H 0.114 0.886 33 H 0.083 0.917 34 H 0.050 0.950 35 H 0.065 0.935 36 H 0.061 0.939 37 H 0.066 0.934 38 H 0.006 0.994 39 H 0.005 0.995 40 H 0.070 0.930 41 H 0.081 0.919 42 H 0.073 0.927 43 H 0.052 0.948 44 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 7.812 7.289 -20.580 23.188 hybrid contribution -0.869 0.046 0.988 1.316 sum 6.943 7.335 -19.592 22.042 Atomic orbital electron populations 1.20349 0.86141 1.03986 1.03206 1.22533 0.97654 0.90552 0.98207 1.77203 0.87718 1.23234 1.27677 1.46175 1.07001 1.05349 1.59986 0.70660 1.21376 0.97823 0.84809 0.97907 1.20588 0.91567 0.98214 1.04552 1.19729 0.91848 0.95998 1.18911 1.20328 1.00117 0.90001 0.88463 1.62038 1.51068 1.02643 1.10561 1.21974 0.95826 0.95052 0.92326 1.21412 0.99335 0.96749 0.95597 1.21074 0.97686 0.95171 0.95259 1.19011 0.94588 0.94627 0.92099 1.21683 1.30124 1.11361 0.93398 0.92433 1.25920 0.97132 0.96982 0.99781 1.70105 1.45239 1.29990 1.12260 0.85507 0.78524 0.79056 0.78646 1.18717 1.20363 1.20597 1.21588 1.00157 0.97843 0.94792 1.22040 0.96884 0.90878 0.96310 0.90763 0.90305 0.89387 0.88214 0.89843 0.89195 0.93818 0.88645 0.91694 0.94997 0.93474 0.93900 0.93414 0.99424 0.99546 0.92971 0.91912 0.92699 0.94778 0.88749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.65 9.20 71.23 0.66 -0.99 16 2 C 0.08 1.94 5.87 43.10 0.25 2.19 16 3 N -0.33 -8.93 12.70 -47.39 -0.60 -9.53 16 4 N -0.48 -9.84 7.36 -48.00 -0.35 -10.19 16 5 H 0.45 6.33 8.96 -213.34 -1.91 4.42 16 6 C 0.11 2.22 7.21 41.40 0.30 2.52 16 7 C -0.09 -1.17 10.04 71.24 0.71 -0.46 16 8 C -0.25 -5.84 4.19 -20.14 -0.08 -5.92 16 9 C 0.14 2.92 5.18 85.56 0.44 3.37 16 10 N -0.54 -14.34 4.80 -900.93 -4.32 -18.67 16 11 C 0.08 2.38 4.01 86.33 0.35 2.72 16 12 C -0.09 -3.68 5.15 30.65 0.16 -3.52 16 13 C -0.07 -3.07 2.20 -10.72 -0.02 -3.09 16 14 C 0.03 1.82 4.45 29.85 0.13 1.96 16 15 C -0.53 -30.51 8.45 25.60 0.22 -30.30 16 16 H 0.06 3.23 7.08 -2.91 -0.02 3.21 16 17 C 0.00 -0.06 5.46 84.66 0.46 0.40 16 18 N -0.93 -58.09 13.29 21.45 0.28 -57.81 16 19 Si 0.96 45.36 29.54 68.60 2.03 47.39 16 20 H -0.26 -11.93 7.11 99.48 0.71 -11.22 16 21 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 22 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 23 C -0.11 -3.60 5.38 30.65 0.16 -3.44 16 24 C 0.07 1.73 5.42 86.33 0.47 2.20 16 25 H 0.07 1.67 7.13 -2.39 -0.02 1.66 16 26 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 27 H 0.09 1.58 7.26 -2.39 -0.02 1.57 16 28 H 0.10 0.87 8.14 -2.38 -0.02 0.85 16 29 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 30 H 0.09 1.35 7.78 -2.39 -0.02 1.33 16 31 H 0.04 0.87 7.19 -2.39 -0.02 0.86 16 32 H 0.10 1.65 7.78 -2.38 -0.02 1.63 16 33 H 0.06 2.10 5.65 -2.39 -0.01 2.09 16 34 H 0.03 0.96 6.98 -2.39 -0.02 0.95 16 35 H 0.05 2.03 7.05 -2.39 -0.02 2.01 16 36 H 0.04 1.80 8.14 -2.38 -0.02 1.78 16 37 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 38 H -0.01 -0.74 8.14 -2.39 -0.02 -0.75 16 39 H -0.01 -0.82 8.14 -2.39 -0.02 -0.84 16 40 H 0.26 15.24 8.31 -92.71 -0.77 14.47 16 41 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 42 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 43 H 0.03 0.87 8.14 -2.39 -0.02 0.85 16 44 H 0.09 1.97 8.12 -2.39 -0.02 1.95 16 Total: -1.00 -70.75 341.93 0.31 -70.44 By element: Atomic # 1 Polarization: 11.67 SS G_CDS: -0.93 Total: 10.74 kcal Atomic # 6 Polarization: -36.57 SS G_CDS: 4.21 Total: -32.37 kcal Atomic # 7 Polarization: -91.20 SS G_CDS: -4.99 Total: -96.19 kcal Atomic # 14 Polarization: 45.36 SS G_CDS: 2.03 Total: 47.39 kcal Total: -70.75 0.31 -70.44 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260142730.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.326 kcal (2) G-P(sol) polarization free energy of solvation -70.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.441 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds