Wall clock time and date at job start Mon Mar 30 2020 02:28:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30830 * 125.90461 * 2 1 4 4 N 1.40085 * 108.20898 * 179.97438 * 3 2 1 5 5 C 1.46502 * 126.03454 * 180.02562 * 4 3 2 6 6 C 1.34942 * 107.92424 * 359.75695 * 4 3 2 7 7 C 1.50706 * 126.12927 * 180.23639 * 6 4 3 8 8 C 1.35320 * 107.74837 * 0.38980 * 6 4 3 9 9 C 1.50696 * 126.04361 * 179.86836 * 8 6 4 10 10 N 1.46900 * 109.47489 * 269.71877 * 9 8 6 11 11 C 1.46845 * 110.99899 * 294.21137 * 10 9 8 12 12 C 1.53037 * 109.52748 * 174.16037 * 11 10 9 13 13 C 1.53117 * 109.27773 * 59.17457 * 12 11 10 14 14 C 1.53118 * 109.16025 * 302.34847 * 13 12 11 15 15 H 1.08995 * 109.53955 * 297.69328 * 14 13 12 16 16 C 1.50703 * 109.50376 * 177.59325 * 14 13 12 17 17 H 1.08004 * 120.00342 * 245.62989 * 16 14 13 18 18 C 1.37883 * 119.99605 * 65.63064 * 16 14 13 19 19 N 1.31513 * 120.00446 * 9.55624 * 18 16 14 20 20 Si 1.86799 * 119.99788 * 189.55642 * 18 16 14 21 21 H 1.48502 * 109.47383 * 94.98812 * 20 18 16 22 22 H 1.48497 * 109.47336 * 214.99057 * 20 18 16 23 23 H 1.48501 * 109.47486 * 334.99035 * 20 18 16 24 24 C 1.46841 * 111.00307 * 169.99545 * 10 9 8 25 25 H 1.08998 * 109.46921 * 270.02575 * 1 2 3 26 26 H 1.09003 * 109.46887 * 30.02137 * 1 2 3 27 27 H 1.08994 * 109.47174 * 150.02222 * 1 2 3 28 28 H 1.09004 * 109.47166 * 90.02720 * 5 4 3 29 29 H 1.09000 * 109.46936 * 210.02214 * 5 4 3 30 30 H 1.08997 * 109.47289 * 330.02703 * 5 4 3 31 31 H 1.08996 * 109.46904 * 270.18444 * 7 6 4 32 32 H 1.08996 * 109.46581 * 30.18129 * 7 6 4 33 33 H 1.08996 * 109.47073 * 150.18330 * 7 6 4 34 34 H 1.09002 * 109.47161 * 149.71578 * 9 8 6 35 35 H 1.09001 * 109.46751 * 29.71505 * 9 8 6 36 36 H 1.09001 * 109.46129 * 294.17777 * 11 10 9 37 37 H 1.09001 * 109.46542 * 54.14125 * 11 10 9 38 38 H 1.09001 * 109.49776 * 299.23733 * 12 11 10 39 39 H 1.08993 * 109.50609 * 179.11728 * 12 11 10 40 40 H 1.09001 * 109.52403 * 182.44443 * 13 12 11 41 41 H 1.09001 * 109.57465 * 62.28308 * 13 12 11 42 42 H 0.96993 * 120.00301 * 179.97438 * 19 18 16 43 43 H 1.09001 * 109.46655 * 305.85738 * 24 10 9 44 44 H 1.09005 * 109.45739 * 65.82726 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2743 1.0597 0.0000 4 7 3.6088 0.6339 0.0006 5 6 4.7900 1.5006 0.0013 6 6 3.6142 -0.7155 0.0064 7 6 4.8350 -1.5992 0.0141 8 6 2.3271 -1.1332 0.0006 9 6 1.8598 -2.5658 0.0012 10 7 1.7086 -3.0322 -1.3836 11 6 0.6302 -2.3077 -2.0681 12 6 0.5972 -2.7138 -3.5432 13 6 0.3686 -4.2242 -3.6468 14 6 1.4785 -4.9539 -2.8850 15 1 2.4420 -4.7324 -3.3440 16 6 1.2284 -6.4393 -2.9320 17 1 1.0016 -6.9778 -2.0237 18 6 1.2891 -7.1108 -4.1347 19 7 1.7462 -6.5007 -5.2063 20 14 0.7220 -8.8874 -4.2421 21 1 -0.6917 -8.9294 -4.6947 22 1 1.5741 -9.6213 -5.2118 23 1 0.8327 -9.5241 -2.9051 24 6 1.4859 -4.4829 -1.4290 25 1 -0.3633 0.0005 1.0277 26 1 -0.3633 0.8898 -0.5142 27 1 -0.3633 -0.8901 -0.5135 28 1 5.0827 1.7150 1.0292 29 1 5.6096 0.9982 -0.5125 30 1 4.5566 2.4334 -0.5120 31 1 5.1345 -1.8139 -1.0117 32 1 5.6485 -1.0903 0.5312 33 1 4.6048 -2.5322 0.5283 34 1 0.9008 -2.6350 0.5146 35 1 2.5930 -3.1869 0.5157 36 1 -0.3244 -2.5528 -1.6025 37 1 0.8071 -1.2350 -1.9906 38 1 1.5466 -2.4564 -4.0127 39 1 -0.2133 -2.1877 -4.0475 40 1 0.3877 -4.5246 -4.6944 41 1 -0.5986 -4.4778 -3.2127 42 1 1.7892 -6.9732 -6.0523 43 1 2.2843 -4.9901 -0.8872 44 1 0.5272 -4.7178 -0.9664 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260172428.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:49 Heat of formation + Delta-G solvation = 45.511030 kcal Electronic energy + Delta-G solvation = -22375.541853 eV Core-core repulsion = 19328.022863 eV Total energy + Delta-G solvation = -3047.518990 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.32709 -39.65049 -35.92096 -34.88712 -33.98953 -32.44183 -31.68188 -30.36533 -28.83535 -26.96990 -26.74084 -25.35547 -23.44174 -23.00999 -20.46804 -20.42066 -20.11494 -18.37399 -17.29883 -16.98136 -16.56714 -16.05833 -15.75111 -15.16584 -14.94723 -14.69517 -14.62466 -14.39027 -14.12139 -13.95284 -13.89754 -13.60222 -13.39680 -13.34450 -12.94564 -12.84719 -12.78568 -12.70489 -12.50771 -12.44087 -12.34004 -11.82721 -11.68426 -11.35568 -11.31235 -10.77542 -10.62268 -10.37485 -9.92497 -9.28027 -8.91118 -8.08462 -6.16916 0.94308 1.42820 1.44392 1.54228 1.68877 1.74970 2.46317 3.22006 3.36078 3.59810 3.80239 4.13221 4.22959 4.24423 4.34999 4.36502 4.39999 4.42998 4.58129 4.59743 4.64567 4.68629 4.72241 4.77157 4.78629 4.85101 4.93463 5.00914 5.04757 5.10323 5.13572 5.19284 5.23144 5.39302 5.42535 5.50172 5.67772 5.79735 6.01138 6.09036 6.21362 6.26350 6.45703 6.54558 6.82309 6.97039 7.49726 9.00340 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.028557 B = 0.004219 C = 0.004009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 980.249031 B = 6635.338038 C = 6981.900963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.073 3.927 3 N -0.335 5.335 4 N -0.382 5.382 5 C 0.094 3.906 6 C 0.099 3.901 7 C -0.086 4.086 8 C -0.247 4.247 9 C 0.139 3.861 10 N -0.541 5.541 11 C 0.072 3.928 12 C -0.110 4.110 13 C -0.096 4.096 14 C 0.053 3.947 15 H -0.001 1.001 16 C -0.534 4.534 17 H 0.054 0.946 18 C 0.017 3.983 19 N -0.918 5.918 20 Si 0.949 3.051 21 H -0.278 1.278 22 H -0.286 1.286 23 H -0.266 1.266 24 C 0.082 3.918 25 H 0.088 0.912 26 H 0.077 0.923 27 H 0.080 0.920 28 H 0.088 0.912 29 H 0.106 0.894 30 H 0.090 0.910 31 H 0.078 0.922 32 H 0.093 0.907 33 H 0.087 0.913 34 H 0.039 0.961 35 H 0.081 0.919 36 H 0.031 0.969 37 H 0.077 0.923 38 H 0.042 0.958 39 H 0.066 0.934 40 H 0.036 0.964 41 H 0.032 0.968 42 H 0.259 0.741 43 H 0.060 0.940 44 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.673 13.816 11.963 18.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.093 4.093 3 N -0.158 5.158 4 N -0.165 5.165 5 C -0.045 4.045 6 C -0.029 4.029 7 C -0.144 4.144 8 C -0.258 4.258 9 C 0.011 3.989 10 N -0.266 5.266 11 C -0.056 4.056 12 C -0.148 4.148 13 C -0.135 4.135 14 C 0.034 3.966 15 H 0.018 0.982 16 C -0.572 4.572 17 H 0.072 0.928 18 C -0.182 4.182 19 N -0.557 5.557 20 Si 0.775 3.225 21 H -0.204 1.204 22 H -0.211 1.211 23 H -0.190 1.190 24 C -0.045 4.045 25 H 0.107 0.893 26 H 0.096 0.904 27 H 0.099 0.901 28 H 0.107 0.893 29 H 0.124 0.876 30 H 0.108 0.892 31 H 0.097 0.903 32 H 0.111 0.889 33 H 0.106 0.894 34 H 0.057 0.943 35 H 0.099 0.901 36 H 0.049 0.951 37 H 0.095 0.905 38 H 0.061 0.939 39 H 0.085 0.915 40 H 0.054 0.946 41 H 0.051 0.949 42 H 0.068 0.932 43 H 0.078 0.922 44 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges 4.333 15.276 11.543 19.630 hybrid contribution -0.951 -1.980 -0.211 2.206 sum 3.382 13.296 11.332 17.794 Atomic orbital electron populations 1.20438 0.85833 1.03817 1.03812 1.22511 0.97677 0.90307 0.98798 1.77167 0.87445 1.23258 1.27924 1.48592 1.05702 1.04624 1.57587 1.22116 0.83188 0.94748 1.04496 1.21263 0.97710 0.84716 0.99229 1.20495 0.92117 0.97971 1.03805 1.19678 0.92005 0.95586 1.18545 1.20204 0.99513 0.90552 0.88592 1.61933 1.44986 1.04217 1.15457 1.22066 0.91750 0.98050 0.93722 1.21578 1.00407 0.96491 0.96349 1.21405 0.98200 0.93602 1.00264 1.18568 0.93950 0.93091 0.90951 0.98243 1.21521 1.47797 0.94381 0.93538 0.92817 1.25693 0.94976 1.01819 0.95733 1.70113 1.46023 1.38822 1.00773 0.85683 0.78196 0.80547 0.78080 1.20354 1.21147 1.18988 1.21978 0.97964 0.86372 0.98179 0.89339 0.90448 0.90108 0.89324 0.87560 0.89172 0.90294 0.88862 0.89435 0.94324 0.90092 0.95066 0.90526 0.93890 0.91496 0.94553 0.94946 0.93182 0.92169 0.96423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.87 9.55 71.24 0.68 -1.19 16 2 C 0.07 2.10 6.25 43.11 0.27 2.37 16 3 N -0.33 -10.03 12.57 -47.38 -0.60 -10.63 16 4 N -0.38 -9.67 4.01 -356.02 -1.43 -11.10 16 5 C 0.09 1.41 11.09 127.77 1.42 2.82 16 6 C 0.10 2.60 6.93 41.41 0.29 2.89 16 7 C -0.09 -1.69 9.69 71.24 0.69 -1.00 16 8 C -0.25 -7.21 4.95 -20.14 -0.10 -7.31 16 9 C 0.14 4.19 4.93 85.56 0.42 4.61 16 10 N -0.54 -19.73 4.65 -900.94 -4.19 -23.92 16 11 C 0.07 2.51 3.95 86.33 0.34 2.85 16 12 C -0.11 -4.41 6.09 30.65 0.19 -4.22 16 13 C -0.10 -4.64 5.09 30.67 0.16 -4.48 16 14 C 0.05 2.73 2.13 -11.49 -0.02 2.70 16 15 H 0.00 -0.04 8.09 -2.39 -0.02 -0.06 16 16 C -0.53 -29.62 8.48 25.60 0.22 -29.41 16 17 H 0.05 2.91 7.77 -2.91 -0.02 2.88 16 18 C 0.02 0.93 5.22 84.66 0.44 1.38 16 19 N -0.92 -54.37 12.19 21.45 0.26 -54.11 16 20 Si 0.95 43.85 29.55 68.60 2.03 45.88 16 21 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 22 H -0.29 -13.01 7.11 99.48 0.71 -12.31 16 23 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 24 C 0.08 3.46 4.68 86.33 0.40 3.87 16 25 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 26 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 27 H 0.08 1.91 4.95 -2.39 -0.01 1.90 16 28 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 29 H 0.11 1.12 7.68 -2.39 -0.02 1.10 16 30 H 0.09 1.27 8.14 -2.39 -0.02 1.26 16 31 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 32 H 0.09 1.24 7.74 -2.39 -0.02 1.22 16 33 H 0.09 1.71 7.14 -2.39 -0.02 1.70 16 34 H 0.04 1.11 7.90 -2.39 -0.02 1.09 16 35 H 0.08 2.27 6.98 -2.39 -0.02 2.26 16 36 H 0.03 1.05 7.44 -2.39 -0.02 1.03 16 37 H 0.08 2.54 5.12 -2.39 -0.01 2.53 16 38 H 0.04 1.84 8.14 -2.39 -0.02 1.82 16 39 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 40 H 0.04 1.97 6.99 -2.39 -0.02 1.95 16 41 H 0.03 1.52 8.14 -2.39 -0.02 1.50 16 42 H 0.26 14.60 8.31 -92.71 -0.77 13.83 16 43 H 0.06 2.48 8.02 -2.39 -0.02 2.46 16 44 H 0.02 0.73 8.14 -2.38 -0.02 0.71 16 Total: -1.00 -68.19 340.74 2.43 -65.75 By element: Atomic # 1 Polarization: 11.28 SS G_CDS: 0.97 Total: 12.25 kcal Atomic # 6 Polarization: -29.50 SS G_CDS: 5.39 Total: -24.11 kcal Atomic # 7 Polarization: -93.81 SS G_CDS: -5.95 Total: -99.76 kcal Atomic # 14 Polarization: 43.85 SS G_CDS: 2.03 Total: 45.88 kcal Total: -68.19 2.43 -65.75 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260172428.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.263 kcal (2) G-P(sol) polarization free energy of solvation -68.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.752 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds