Wall clock time and date at job start Mon Mar 30 2020 02:28:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30832 * 125.90138 * 2 1 4 4 N 1.40077 * 108.20683 * 179.97438 * 3 2 1 5 5 C 1.46505 * 126.03844 * 180.02562 * 4 3 2 6 6 C 1.34945 * 107.92713 * 359.75639 * 4 3 2 7 7 C 1.50699 * 126.12810 * 180.24421 * 6 4 3 8 8 C 1.35314 * 107.74574 * 0.38805 * 6 4 3 9 9 C 1.50704 * 126.04275 * 179.87001 * 8 6 4 10 10 N 1.46898 * 109.47021 * 269.72318 * 9 8 6 11 11 C 1.46845 * 111.00565 * 65.78958 * 10 9 8 12 12 C 1.53034 * 109.52676 * 185.84030 * 11 10 9 13 13 C 1.53126 * 109.27454 * 300.81918 * 12 11 10 14 14 C 1.53119 * 109.16048 * 57.65518 * 13 12 11 15 15 H 1.09004 * 109.50440 * 62.28501 * 14 13 12 16 16 C 1.50705 * 109.50316 * 182.40389 * 14 13 12 17 17 H 1.07990 * 119.99883 * 119.99811 * 16 14 13 18 18 C 1.37878 * 119.99667 * 300.00057 * 16 14 13 19 19 N 1.31513 * 120.00258 * 359.97438 * 18 16 14 20 20 Si 1.86799 * 119.99678 * 179.97438 * 18 16 14 21 21 H 1.48500 * 109.47005 * 60.00146 * 20 18 16 22 22 H 1.48497 * 109.46947 * 179.97438 * 20 18 16 23 23 H 1.48502 * 109.47094 * 300.00031 * 20 18 16 24 24 C 1.46850 * 110.99813 * 190.00023 * 10 9 8 25 25 H 1.09000 * 109.46980 * 270.02168 * 1 2 3 26 26 H 1.09000 * 109.47067 * 30.02320 * 1 2 3 27 27 H 1.08995 * 109.47382 * 150.02660 * 1 2 3 28 28 H 1.08998 * 109.47400 * 89.96966 * 5 4 3 29 29 H 1.08994 * 109.47357 * 209.97313 * 5 4 3 30 30 H 1.09005 * 109.46704 * 329.97246 * 5 4 3 31 31 H 1.09002 * 109.47130 * 270.17136 * 7 6 4 32 32 H 1.09000 * 109.47754 * 30.17460 * 7 6 4 33 33 H 1.09004 * 109.47530 * 150.17959 * 7 6 4 34 34 H 1.08999 * 109.46799 * 149.71738 * 9 8 6 35 35 H 1.09002 * 109.46493 * 29.72031 * 9 8 6 36 36 H 1.08995 * 109.46315 * 65.81881 * 11 10 9 37 37 H 1.09005 * 109.45975 * 305.85394 * 11 10 9 38 38 H 1.08997 * 109.50792 * 180.88024 * 12 11 10 39 39 H 1.09006 * 109.50471 * 60.75677 * 12 11 10 40 40 H 1.08999 * 109.52028 * 177.55723 * 13 12 11 41 41 H 1.08993 * 109.52259 * 297.74866 * 13 12 11 42 42 H 0.96999 * 120.00249 * 180.02562 * 19 18 16 43 43 H 1.09005 * 109.46186 * 54.13967 * 24 10 9 44 44 H 1.08998 * 109.46012 * 294.17361 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2742 1.0598 0.0000 4 7 3.6087 0.6340 0.0006 5 6 4.7899 1.5007 0.0013 6 6 3.6142 -0.7154 0.0064 7 6 4.8350 -1.5989 0.0143 8 6 2.3271 -1.1331 0.0007 9 6 1.8599 -2.5658 0.0013 10 7 1.7088 -3.0322 -1.3834 11 6 3.0078 -3.0832 -2.0664 12 6 2.7968 -3.4312 -3.5416 13 6 2.0910 -4.7861 -3.6454 14 6 0.7634 -4.7208 -2.8853 15 1 0.1169 -3.9736 -3.3456 16 6 0.0897 -6.0681 -2.9325 17 1 -0.1275 -6.5956 -2.0156 18 6 -0.2492 -6.6271 -4.1465 19 7 0.0150 -5.9845 -5.2631 20 14 -1.0835 -8.2974 -4.2051 21 1 -2.3709 -8.2337 -3.4675 22 1 -1.3415 -8.6724 -5.6186 23 1 -0.2021 -9.3134 -3.5758 24 6 1.0334 -4.3354 -1.4291 25 1 -0.3633 0.0004 1.0277 26 1 -0.3633 0.8898 -0.5142 27 1 -0.3634 -0.8902 -0.5134 28 1 5.0821 1.7159 1.0291 29 1 5.6097 0.9980 -0.5117 30 1 4.5567 2.4331 -0.5129 31 1 5.1345 -1.8139 -1.0115 32 1 5.6485 -1.0901 0.5313 33 1 4.6049 -2.5321 0.5286 34 1 0.9009 -2.6350 0.5148 35 1 2.5931 -3.1868 0.5159 36 1 3.6338 -3.8437 -1.5997 37 1 3.4973 -2.1124 -1.9887 38 1 3.7622 -3.4843 -4.0447 39 1 2.1822 -2.6638 -4.0123 40 1 1.8998 -5.0179 -4.6932 41 1 2.7226 -5.5601 -3.2095 42 1 -0.2237 -6.3776 -6.1171 43 1 0.0888 -4.2740 -0.8885 44 1 1.6687 -5.0901 -0.9655 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260172430.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:52 Heat of formation + Delta-G solvation = 65.533773 kcal Electronic energy + Delta-G solvation = -22400.799200 eV Core-core repulsion = 19354.148462 eV Total energy + Delta-G solvation = -3046.650738 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.28758 -38.02480 -34.39697 -33.80627 -32.25994 -31.23361 -29.67244 -29.41616 -27.80888 -25.77964 -24.85422 -24.19683 -21.82836 -21.30120 -19.38351 -19.17329 -18.50090 -16.43816 -16.19424 -15.84873 -14.86489 -14.53375 -14.24873 -14.12519 -13.68857 -13.42444 -13.32829 -13.04036 -12.89669 -12.74584 -12.55109 -12.37924 -12.13788 -11.87217 -11.82625 -11.77951 -11.53998 -11.05613 -10.89152 -10.63868 -10.57197 -10.28989 -10.01942 -9.76532 -9.39973 -8.99719 -8.90216 -8.64369 -8.24785 -8.13821 -7.48253 -5.92136 -3.98322 1.94977 2.57488 2.89739 3.35299 3.40050 3.42405 4.45792 4.49386 4.66436 4.81786 4.98818 5.00060 5.14178 5.24399 5.36689 5.37670 5.39214 5.52499 5.69844 5.72940 5.82407 5.84141 5.92377 6.04422 6.14747 6.18030 6.30361 6.32837 6.38335 6.49842 6.59606 6.80649 6.82754 6.88732 7.05244 7.13912 7.29908 7.48024 7.78775 7.82784 7.89472 7.94973 8.15820 8.24511 8.54582 9.05910 9.65659 11.13651 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.030467 B = 0.004196 C = 0.003978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 918.811767 B = 6671.508300 C = 7036.679858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.096 3.904 3 N -0.307 5.307 4 N -0.381 5.381 5 C 0.106 3.894 6 C 0.083 3.917 7 C -0.094 4.094 8 C -0.213 4.213 9 C 0.132 3.868 10 N -0.532 5.532 11 C 0.064 3.936 12 C -0.118 4.118 13 C -0.109 4.109 14 C 0.056 3.944 15 H 0.034 0.966 16 C -0.514 4.514 17 H 0.053 0.947 18 C 0.063 3.937 19 N -0.889 5.889 20 Si 0.889 3.111 21 H -0.277 1.277 22 H -0.288 1.288 23 H -0.279 1.279 24 C 0.068 3.932 25 H 0.071 0.929 26 H 0.068 0.932 27 H 0.088 0.912 28 H 0.068 0.932 29 H 0.083 0.917 30 H 0.086 0.914 31 H 0.082 0.918 32 H 0.065 0.935 33 H 0.084 0.916 34 H 0.076 0.924 35 H 0.029 0.971 36 H 0.019 0.981 37 H 0.059 0.941 38 H 0.042 0.958 39 H 0.058 0.942 40 H 0.089 0.911 41 H 0.028 0.972 42 H 0.259 0.741 43 H 0.059 0.941 44 H 0.017 0.983 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.510 11.297 10.560 18.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.070 4.070 3 N -0.129 5.129 4 N -0.164 5.164 5 C -0.036 4.036 6 C -0.044 4.044 7 C -0.152 4.152 8 C -0.225 4.225 9 C 0.003 3.997 10 N -0.256 5.256 11 C -0.064 4.064 12 C -0.156 4.156 13 C -0.147 4.147 14 C 0.037 3.963 15 H 0.052 0.948 16 C -0.553 4.553 17 H 0.071 0.929 18 C -0.138 4.138 19 N -0.527 5.527 20 Si 0.717 3.283 21 H -0.203 1.203 22 H -0.214 1.214 23 H -0.204 1.204 24 C -0.059 4.059 25 H 0.090 0.910 26 H 0.087 0.913 27 H 0.107 0.893 28 H 0.087 0.913 29 H 0.101 0.899 30 H 0.105 0.895 31 H 0.101 0.899 32 H 0.084 0.916 33 H 0.103 0.897 34 H 0.095 0.905 35 H 0.047 0.953 36 H 0.037 0.963 37 H 0.077 0.923 38 H 0.061 0.939 39 H 0.077 0.923 40 H 0.107 0.893 41 H 0.047 0.953 42 H 0.069 0.931 43 H 0.077 0.923 44 H 0.035 0.965 Dipole moment (debyes) X Y Z Total from point charges 9.369 12.982 10.110 18.934 hybrid contribution 0.249 -2.266 0.308 2.301 sum 9.617 10.715 10.417 17.772 Atomic orbital electron populations 1.20202 0.86688 1.03936 1.02404 1.22171 0.96844 0.90023 0.97981 1.77260 0.86089 1.22657 1.26921 1.48189 1.05440 1.03981 1.58757 1.21726 0.84178 0.94944 1.02769 1.20784 0.96911 0.84436 1.02299 1.20561 0.92864 0.98311 1.03445 1.19655 0.90806 0.96323 1.15687 1.20268 0.99648 0.89185 0.90568 1.61992 1.21029 1.29439 1.13151 1.22102 0.89996 0.98596 0.95676 1.21679 0.99194 1.00564 0.94117 1.21639 0.96617 0.92108 1.04370 1.18647 0.93305 0.95949 0.88409 0.94809 1.21128 1.38464 1.03434 0.92279 0.92920 1.24927 0.95768 0.97333 0.95768 1.69885 1.47451 1.38044 0.97362 0.86709 0.80075 0.84636 0.76841 1.20313 1.21381 1.20434 1.22309 0.96278 0.86132 1.01190 0.91043 0.91295 0.89321 0.91297 0.89862 0.89522 0.89926 0.91574 0.89739 0.90535 0.95327 0.96317 0.92268 0.93919 0.92299 0.89260 0.95291 0.93072 0.92286 0.96486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.97 10.12 36.01 0.36 -0.60 16 2 C 0.10 1.50 7.22 -82.40 -0.59 0.91 16 3 N -0.31 -4.88 12.57 33.67 0.42 -4.46 16 4 N -0.38 -5.14 4.01 -63.88 -0.26 -5.39 16 5 C 0.11 0.90 11.09 59.85 0.66 1.56 16 6 C 0.08 1.13 5.97 -82.27 -0.49 0.63 16 7 C -0.09 -0.96 8.60 36.01 0.31 -0.65 16 8 C -0.21 -3.28 4.98 -105.05 -0.52 -3.80 16 9 C 0.13 2.08 4.91 -4.98 -0.02 2.06 16 10 N -0.53 -9.94 4.65 -236.12 -1.10 -11.04 16 11 C 0.06 1.15 4.52 -3.84 -0.02 1.13 16 12 C -0.12 -2.37 6.09 -26.65 -0.16 -2.53 16 13 C -0.11 -2.61 5.02 -26.60 -0.13 -2.75 16 14 C 0.06 1.40 2.26 -91.69 -0.21 1.19 16 15 H 0.03 0.95 8.14 -51.93 -0.42 0.53 16 16 C -0.51 -14.11 8.56 -34.44 -0.29 -14.40 16 17 H 0.05 1.42 7.74 -52.49 -0.41 1.01 16 18 C 0.06 1.75 5.30 -17.82 -0.09 1.66 16 19 N -0.89 -25.50 11.35 55.43 0.63 -24.87 16 20 Si 0.89 21.29 29.54 -169.99 -5.02 16.27 16 21 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 22 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 23 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 24 C 0.07 1.44 4.68 -3.83 -0.02 1.42 16 25 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 26 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 27 H 0.09 1.23 7.92 -51.93 -0.41 0.82 16 28 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 29 H 0.08 0.53 7.67 -51.93 -0.40 0.14 16 30 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.08 0.84 6.87 -51.93 -0.36 0.49 16 32 H 0.07 0.51 7.74 -51.93 -0.40 0.11 16 33 H 0.08 0.86 7.14 -51.93 -0.37 0.49 16 34 H 0.08 1.16 7.76 -51.93 -0.40 0.76 16 35 H 0.03 0.43 7.12 -51.93 -0.37 0.06 16 36 H 0.02 0.33 8.14 -51.93 -0.42 -0.10 16 37 H 0.06 0.99 4.63 -51.93 -0.24 0.75 16 38 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.06 1.26 8.14 -51.93 -0.42 0.83 16 40 H 0.09 2.39 6.15 -51.93 -0.32 2.07 16 41 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 43 H 0.06 1.22 8.02 -51.93 -0.42 0.81 16 44 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 LS Contribution 341.27 15.07 5.14 5.14 Total: -1.00 -31.25 341.27 -8.86 -40.11 By element: Atomic # 1 Polarization: 5.87 SS G_CDS: -7.46 Total: -1.59 kcal Atomic # 6 Polarization: -12.94 SS G_CDS: -1.22 Total: -14.17 kcal Atomic # 7 Polarization: -45.46 SS G_CDS: -0.30 Total: -45.76 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -31.25 -8.86 -40.11 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260172430.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.642 kcal (2) G-P(sol) polarization free energy of solvation -31.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.108 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds