Wall clock time and date at job start Mon Mar 30 2020 02:28:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30832 * 125.90138 * 2 1 4 4 N 1.40077 * 108.20683 * 179.97438 * 3 2 1 5 5 C 1.46505 * 126.03844 * 180.02562 * 4 3 2 6 6 C 1.34945 * 107.92713 * 359.75639 * 4 3 2 7 7 C 1.50699 * 126.12810 * 180.24421 * 6 4 3 8 8 C 1.35314 * 107.74574 * 0.38805 * 6 4 3 9 9 C 1.50704 * 126.04275 * 179.87001 * 8 6 4 10 10 N 1.46898 * 109.47021 * 269.72318 * 9 8 6 11 11 C 1.46845 * 111.00565 * 65.78958 * 10 9 8 12 12 C 1.53034 * 109.52676 * 185.84030 * 11 10 9 13 13 C 1.53126 * 109.27454 * 300.81918 * 12 11 10 14 14 C 1.53119 * 109.16048 * 57.65518 * 13 12 11 15 15 H 1.09004 * 109.50440 * 62.28501 * 14 13 12 16 16 C 1.50705 * 109.50316 * 182.40389 * 14 13 12 17 17 H 1.07990 * 119.99883 * 119.99811 * 16 14 13 18 18 C 1.37878 * 119.99667 * 300.00057 * 16 14 13 19 19 N 1.31513 * 120.00258 * 359.97438 * 18 16 14 20 20 Si 1.86799 * 119.99678 * 179.97438 * 18 16 14 21 21 H 1.48500 * 109.47005 * 60.00146 * 20 18 16 22 22 H 1.48497 * 109.46947 * 179.97438 * 20 18 16 23 23 H 1.48502 * 109.47094 * 300.00031 * 20 18 16 24 24 C 1.46850 * 110.99813 * 190.00023 * 10 9 8 25 25 H 1.09000 * 109.46980 * 270.02168 * 1 2 3 26 26 H 1.09000 * 109.47067 * 30.02320 * 1 2 3 27 27 H 1.08995 * 109.47382 * 150.02660 * 1 2 3 28 28 H 1.08998 * 109.47400 * 89.96966 * 5 4 3 29 29 H 1.08994 * 109.47357 * 209.97313 * 5 4 3 30 30 H 1.09005 * 109.46704 * 329.97246 * 5 4 3 31 31 H 1.09002 * 109.47130 * 270.17136 * 7 6 4 32 32 H 1.09000 * 109.47754 * 30.17460 * 7 6 4 33 33 H 1.09004 * 109.47530 * 150.17959 * 7 6 4 34 34 H 1.08999 * 109.46799 * 149.71738 * 9 8 6 35 35 H 1.09002 * 109.46493 * 29.72031 * 9 8 6 36 36 H 1.08995 * 109.46315 * 65.81881 * 11 10 9 37 37 H 1.09005 * 109.45975 * 305.85394 * 11 10 9 38 38 H 1.08997 * 109.50792 * 180.88024 * 12 11 10 39 39 H 1.09006 * 109.50471 * 60.75677 * 12 11 10 40 40 H 1.08999 * 109.52028 * 177.55723 * 13 12 11 41 41 H 1.08993 * 109.52259 * 297.74866 * 13 12 11 42 42 H 0.96999 * 120.00249 * 180.02562 * 19 18 16 43 43 H 1.09005 * 109.46186 * 54.13967 * 24 10 9 44 44 H 1.08998 * 109.46012 * 294.17361 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2742 1.0598 0.0000 4 7 3.6087 0.6340 0.0006 5 6 4.7899 1.5007 0.0013 6 6 3.6142 -0.7154 0.0064 7 6 4.8350 -1.5989 0.0143 8 6 2.3271 -1.1331 0.0007 9 6 1.8599 -2.5658 0.0013 10 7 1.7088 -3.0322 -1.3834 11 6 3.0078 -3.0832 -2.0664 12 6 2.7968 -3.4312 -3.5416 13 6 2.0910 -4.7861 -3.6454 14 6 0.7634 -4.7208 -2.8853 15 1 0.1169 -3.9736 -3.3456 16 6 0.0897 -6.0681 -2.9325 17 1 -0.1275 -6.5956 -2.0156 18 6 -0.2492 -6.6271 -4.1465 19 7 0.0150 -5.9845 -5.2631 20 14 -1.0835 -8.2974 -4.2051 21 1 -2.3709 -8.2337 -3.4675 22 1 -1.3415 -8.6724 -5.6186 23 1 -0.2021 -9.3134 -3.5758 24 6 1.0334 -4.3354 -1.4291 25 1 -0.3633 0.0004 1.0277 26 1 -0.3633 0.8898 -0.5142 27 1 -0.3634 -0.8902 -0.5134 28 1 5.0821 1.7159 1.0291 29 1 5.6097 0.9980 -0.5117 30 1 4.5567 2.4331 -0.5129 31 1 5.1345 -1.8139 -1.0115 32 1 5.6485 -1.0901 0.5313 33 1 4.6049 -2.5321 0.5286 34 1 0.9009 -2.6350 0.5148 35 1 2.5931 -3.1868 0.5159 36 1 3.6338 -3.8437 -1.5997 37 1 3.4973 -2.1124 -1.9887 38 1 3.7622 -3.4843 -4.0447 39 1 2.1822 -2.6638 -4.0123 40 1 1.8998 -5.0179 -4.6932 41 1 2.7226 -5.5601 -3.2095 42 1 -0.2237 -6.3776 -6.1171 43 1 0.0888 -4.2740 -0.8885 44 1 1.6687 -5.0901 -0.9655 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260172430.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:52 Heat of formation + Delta-G solvation = 46.234075 kcal Electronic energy + Delta-G solvation = -22401.636098 eV Core-core repulsion = 19354.148462 eV Total energy + Delta-G solvation = -3047.487636 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.33574 -39.62349 -35.88323 -35.02912 -33.86940 -32.55748 -31.45839 -30.36475 -28.94300 -26.93682 -26.68631 -25.38007 -23.42319 -22.97919 -20.50711 -20.25094 -20.20930 -18.36937 -17.29132 -17.02571 -16.57299 -15.98312 -15.58767 -15.49338 -14.92074 -14.76434 -14.39299 -14.26755 -14.24511 -14.07491 -13.81960 -13.54358 -13.43987 -13.22422 -12.96383 -12.81766 -12.77925 -12.71549 -12.61117 -12.45651 -12.19156 -11.77383 -11.65678 -11.43769 -11.28289 -10.81999 -10.61593 -10.33069 -9.92412 -9.26731 -8.91325 -8.03562 -6.17890 0.92558 1.44221 1.45657 1.53062 1.69765 1.76448 2.46523 3.23211 3.35363 3.64245 3.76523 4.10470 4.18860 4.26282 4.32846 4.40209 4.42637 4.43116 4.56073 4.62546 4.65862 4.68404 4.71989 4.77327 4.83782 4.87501 4.93819 5.01117 5.06587 5.11676 5.13481 5.24343 5.26846 5.32138 5.43847 5.57302 5.67492 5.80223 6.03300 6.19268 6.22112 6.29109 6.47805 6.54178 6.83319 6.95612 7.49974 9.00717 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.030467 B = 0.004196 C = 0.003978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 918.811767 B = 6671.508300 C = 7036.679858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C 0.079 3.921 3 N -0.337 5.337 4 N -0.381 5.381 5 C 0.094 3.906 6 C 0.091 3.909 7 C -0.094 4.094 8 C -0.243 4.243 9 C 0.140 3.860 10 N -0.544 5.544 11 C 0.073 3.927 12 C -0.111 4.111 13 C -0.101 4.101 14 C 0.054 3.946 15 H -0.008 1.008 16 C -0.535 4.535 17 H 0.053 0.947 18 C 0.014 3.986 19 N -0.917 5.917 20 Si 0.953 3.047 21 H -0.271 1.271 22 H -0.286 1.286 23 H -0.271 1.271 24 C 0.083 3.917 25 H 0.089 0.911 26 H 0.070 0.930 27 H 0.075 0.925 28 H 0.088 0.912 29 H 0.109 0.891 30 H 0.088 0.912 31 H 0.087 0.913 32 H 0.096 0.904 33 H 0.086 0.914 34 H 0.077 0.923 35 H 0.042 0.958 36 H 0.031 0.969 37 H 0.078 0.922 38 H 0.067 0.933 39 H 0.040 0.960 40 H 0.055 0.945 41 H 0.025 0.975 42 H 0.259 0.741 43 H 0.058 0.942 44 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.329 11.369 11.964 20.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.087 4.087 3 N -0.161 5.161 4 N -0.163 5.163 5 C -0.046 4.046 6 C -0.038 4.038 7 C -0.152 4.152 8 C -0.255 4.255 9 C 0.012 3.988 10 N -0.268 5.268 11 C -0.055 4.055 12 C -0.149 4.149 13 C -0.139 4.139 14 C 0.035 3.965 15 H 0.011 0.989 16 C -0.573 4.573 17 H 0.072 0.928 18 C -0.185 4.185 19 N -0.556 5.556 20 Si 0.779 3.221 21 H -0.197 1.197 22 H -0.212 1.212 23 H -0.196 1.196 24 C -0.045 4.045 25 H 0.107 0.893 26 H 0.089 0.911 27 H 0.094 0.906 28 H 0.106 0.894 29 H 0.128 0.872 30 H 0.107 0.893 31 H 0.106 0.894 32 H 0.114 0.886 33 H 0.105 0.895 34 H 0.095 0.905 35 H 0.060 0.940 36 H 0.049 0.951 37 H 0.096 0.904 38 H 0.085 0.915 39 H 0.058 0.942 40 H 0.073 0.927 41 H 0.044 0.956 42 H 0.068 0.932 43 H 0.076 0.924 44 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges 11.198 13.079 11.532 20.723 hybrid contribution -0.265 -2.204 -0.131 2.224 sum 10.933 10.875 11.402 19.178 Atomic orbital electron populations 1.20194 0.85981 1.03333 1.03388 1.22495 0.97725 0.90331 0.98112 1.77192 0.87513 1.23248 1.28130 1.48594 1.05676 1.04620 1.57436 1.22133 0.83163 0.94798 1.04514 1.21265 0.97466 0.84898 1.00205 1.20686 0.92254 0.98028 1.04183 1.19692 0.91840 0.95768 1.18175 1.20198 1.00226 0.89813 0.88581 1.61915 1.21679 1.27703 1.15553 1.22035 0.89845 0.99868 0.93707 1.21595 0.99484 0.97505 0.96345 1.21436 0.96384 0.94269 1.01861 1.18570 0.93034 0.93960 0.90964 0.98950 1.21519 1.38838 1.04519 0.92457 0.92839 1.25720 0.96403 1.00931 0.95429 1.70043 1.48269 1.39572 0.97764 0.85687 0.79203 0.80322 0.76873 1.19669 1.21153 1.19566 1.21968 0.96746 0.87587 0.98171 0.89272 0.91082 0.90607 0.89375 0.87231 0.89285 0.89424 0.88550 0.89529 0.90494 0.94002 0.95094 0.90397 0.91489 0.94160 0.92668 0.95615 0.93191 0.92388 0.96385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.85 10.12 71.24 0.72 -1.13 16 2 C 0.08 2.41 7.22 43.10 0.31 2.72 16 3 N -0.34 -10.38 12.57 -47.38 -0.60 -10.98 16 4 N -0.38 -9.37 4.01 -356.03 -1.43 -10.80 16 5 C 0.09 1.30 11.09 127.77 1.42 2.72 16 6 C 0.09 2.22 5.97 41.40 0.25 2.47 16 7 C -0.09 -1.55 8.60 71.24 0.61 -0.94 16 8 C -0.24 -7.11 4.98 -20.14 -0.10 -7.21 16 9 C 0.14 4.22 4.91 85.56 0.42 4.64 16 10 N -0.54 -19.96 4.65 -900.93 -4.19 -24.15 16 11 C 0.07 2.49 4.52 86.33 0.39 2.88 16 12 C -0.11 -4.43 6.09 30.65 0.19 -4.25 16 13 C -0.10 -4.93 5.02 30.68 0.15 -4.78 16 14 C 0.05 2.77 2.26 -11.49 -0.03 2.74 16 15 H -0.01 -0.46 8.14 -2.39 -0.02 -0.48 16 16 C -0.53 -29.88 8.56 25.60 0.22 -29.66 16 17 H 0.05 2.90 7.74 -2.92 -0.02 2.88 16 18 C 0.01 0.77 5.30 84.66 0.45 1.22 16 19 N -0.92 -54.08 11.35 21.45 0.24 -53.84 16 20 Si 0.95 43.98 29.54 68.60 2.03 46.01 16 21 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 22 H -0.29 -12.99 7.11 99.48 0.71 -12.29 16 23 H -0.27 -12.05 7.11 99.48 0.71 -11.35 16 24 C 0.08 3.51 4.68 86.32 0.40 3.92 16 25 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 26 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 27 H 0.08 2.15 7.92 -2.39 -0.02 2.14 16 28 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 29 H 0.11 0.95 7.67 -2.39 -0.02 0.93 16 30 H 0.09 1.21 8.14 -2.38 -0.02 1.19 16 31 H 0.09 1.42 6.87 -2.39 -0.02 1.40 16 32 H 0.10 1.02 7.74 -2.39 -0.02 1.00 16 33 H 0.09 1.44 7.14 -2.38 -0.02 1.42 16 34 H 0.08 2.27 7.76 -2.39 -0.02 2.26 16 35 H 0.04 1.15 7.12 -2.39 -0.02 1.14 16 36 H 0.03 0.99 8.14 -2.39 -0.02 0.97 16 37 H 0.08 2.39 4.63 -2.38 -0.01 2.38 16 38 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 39 H 0.04 1.73 8.14 -2.38 -0.02 1.71 16 40 H 0.05 3.06 6.15 -2.39 -0.01 3.04 16 41 H 0.03 1.22 8.14 -2.39 -0.02 1.21 16 42 H 0.26 14.58 8.31 -92.71 -0.77 13.81 16 43 H 0.06 2.43 8.02 -2.38 -0.02 2.41 16 44 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 Total: -1.00 -68.91 341.27 2.43 -66.49 By element: Atomic # 1 Polarization: 10.97 SS G_CDS: 0.96 Total: 11.94 kcal Atomic # 6 Polarization: -30.07 SS G_CDS: 5.41 Total: -24.67 kcal Atomic # 7 Polarization: -93.80 SS G_CDS: -5.97 Total: -99.76 kcal Atomic # 14 Polarization: 43.98 SS G_CDS: 2.03 Total: 46.01 kcal Total: -68.91 2.43 -66.49 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260172430.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.720 kcal (2) G-P(sol) polarization free energy of solvation -68.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.486 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds