Wall clock time and date at job start Mon Mar 30 2020 01:37:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.47130 * 2 1 4 4 C 1.52996 * 109.47127 * 119.99750 * 2 1 3 5 5 H 1.09000 * 109.47143 * 296.68197 * 4 2 1 6 6 C 1.52999 * 109.47382 * 176.67990 * 4 2 1 7 7 N 1.46911 * 109.47272 * 56.67795 * 4 2 1 8 8 C 1.46902 * 110.99136 * 58.42111 * 7 4 2 9 9 C 1.46891 * 111.00164 * 182.37570 * 7 4 2 10 10 C 1.50697 * 109.47077 * 170.00450 * 9 7 4 11 11 C 1.38300 * 119.93373 * 89.99743 * 10 9 7 12 12 C 1.38102 * 120.07022 * 180.02562 * 11 10 9 13 13 C 1.38871 * 119.93217 * 359.97438 * 12 11 10 14 14 O 1.35753 * 120.06939 * 180.02562 * 13 12 11 15 15 C 1.34824 * 117.00152 * 5.86958 * 14 13 12 16 16 H 1.08005 * 119.99941 * 5.40681 * 15 14 13 17 17 C 1.38651 * 120.00225 * 185.41320 * 15 14 13 18 18 N 1.31558 * 120.00171 * 179.97438 * 17 15 14 19 19 Si 1.86803 * 119.99813 * 359.97438 * 17 15 14 20 20 H 1.48505 * 109.46933 * 90.00290 * 19 17 15 21 21 H 1.48497 * 109.47136 * 209.99795 * 19 17 15 22 22 H 1.48491 * 109.47297 * 330.00180 * 19 17 15 23 23 C 1.38878 * 119.86369 * 0.26521 * 13 12 11 24 24 C 1.38105 * 119.92557 * 359.50165 * 23 13 12 25 25 H 1.08999 * 109.47648 * 300.00284 * 1 2 3 26 26 H 1.09006 * 109.47327 * 60.00311 * 1 2 3 27 27 H 1.08999 * 109.47047 * 180.02562 * 1 2 3 28 28 H 1.08991 * 109.47337 * 239.99658 * 2 1 3 29 29 H 1.09000 * 109.46861 * 306.90633 * 3 2 1 30 30 H 1.09000 * 109.46927 * 66.91038 * 3 2 1 31 31 H 1.09002 * 109.47013 * 186.91286 * 3 2 1 32 32 H 1.09000 * 109.47151 * 300.00202 * 6 4 2 33 33 H 1.09002 * 109.46841 * 60.00598 * 6 4 2 34 34 H 1.09006 * 109.47093 * 179.97438 * 6 4 2 35 35 H 1.09002 * 109.46506 * 186.49333 * 8 7 4 36 36 H 1.08994 * 109.47754 * 306.49625 * 8 7 4 37 37 H 1.08998 * 109.46950 * 66.50189 * 8 7 4 38 38 H 1.09001 * 109.47477 * 50.00393 * 9 7 4 39 39 H 1.09005 * 109.47549 * 289.99942 * 9 7 4 40 40 H 1.08006 * 119.96766 * 0.02562 * 11 10 9 41 41 H 1.08005 * 120.03085 * 179.97438 * 12 11 10 42 42 H 0.97004 * 119.99570 * 179.97438 * 18 17 15 43 43 H 1.08002 * 120.03801 * 179.73065 * 23 13 12 44 44 H 1.08001 * 119.96504 * 180.23050 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 1 1.7260 -0.1741 2.1382 6 6 3.5677 -0.7940 1.2082 7 7 1.4858 -2.0812 1.2901 8 6 1.8581 -2.8375 0.0871 9 6 1.9096 -2.7859 2.5073 10 6 1.1352 -4.0720 2.6385 11 6 1.6263 -5.2342 2.0721 12 6 0.9186 -6.4142 2.1901 13 6 -0.2871 -6.4332 2.8789 14 8 -0.9847 -7.5917 2.9971 15 6 -0.3961 -8.7111 2.5300 16 1 0.6203 -8.6754 2.1665 17 6 -1.0957 -9.9081 2.5160 18 7 -0.5215 -11.0003 2.0597 19 14 -2.8535 -9.9700 3.1452 20 1 -3.7899 -9.6965 2.0255 21 1 -3.1316 -11.3170 3.7051 22 1 -3.0363 -8.9460 4.2048 23 6 -0.7801 -5.2635 3.4423 24 6 -0.0653 -4.0876 3.3249 25 1 -0.3634 0.5139 0.8899 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5138 -0.8899 29 1 1.5792 1.9908 -0.8218 30 1 1.7811 1.9194 0.9453 31 1 3.1230 1.4450 -0.1237 32 1 3.8816 -1.3410 0.3193 33 1 3.9788 0.2151 1.1781 34 1 3.9310 -1.3074 2.0985 35 1 1.3422 -3.7977 0.0875 36 1 1.5731 -2.2723 -0.8002 37 1 2.9353 -3.0039 0.0814 38 1 1.7189 -2.1567 3.3766 39 1 2.9751 -3.0081 2.4462 40 1 2.5643 -5.2190 1.5368 41 1 1.3025 -7.3214 1.7472 42 1 -1.0108 -11.8378 2.0503 43 1 -1.7196 -5.2741 3.9749 44 1 -0.4463 -3.1784 3.7660 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000264574664.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:37:29 Heat of formation + Delta-G solvation = -7.966745 kcal Electronic energy + Delta-G solvation = -21598.575687 eV Core-core repulsion = 18516.444975 eV Total energy + Delta-G solvation = -3082.130711 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.56457 -38.76078 -36.73581 -34.34327 -32.37597 -30.46179 -30.20659 -29.46252 -27.06034 -26.71074 -25.39648 -24.22943 -22.07133 -21.95784 -20.15574 -19.26786 -17.85726 -17.21483 -16.26799 -15.41814 -15.10922 -14.59047 -14.50188 -14.24443 -13.97044 -13.80263 -13.62419 -13.41255 -12.91212 -12.67002 -12.55735 -12.33519 -12.29863 -12.20932 -12.11138 -11.78454 -11.45089 -11.37355 -11.20938 -11.00929 -10.81255 -10.70994 -10.66752 -10.57836 -10.31243 -10.11877 -9.38879 -8.85432 -8.23607 -8.12737 -7.27497 -6.40719 -4.07044 2.16468 2.22246 3.22868 3.26760 3.41607 4.01821 4.24895 4.54960 4.61912 4.80968 4.91248 5.01048 5.08903 5.10579 5.22804 5.29726 5.34081 5.39819 5.51349 5.56955 5.59903 5.67907 5.73663 5.73853 5.77720 5.82721 5.85787 5.88419 6.00125 6.09710 6.16285 6.16942 6.27491 6.37734 6.41676 6.61142 6.82531 7.04202 7.15121 7.25644 7.29965 7.37319 7.64355 7.81396 8.05571 8.94958 9.58268 10.67117 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.035273 B = 0.003368 C = 0.003296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 793.627599 B = 8310.755096 C = 8491.947512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.090 4.090 3 C -0.147 4.147 4 C 0.084 3.916 5 H 0.079 0.921 6 C -0.189 4.189 7 N -0.525 5.525 8 C 0.017 3.983 9 C 0.110 3.890 10 C -0.168 4.168 11 C -0.067 4.067 12 C -0.221 4.221 13 C 0.160 3.840 14 O -0.219 6.219 15 C -0.388 4.388 16 H 0.105 0.895 17 C 0.063 3.937 18 N -0.881 5.881 19 Si 0.905 3.095 20 H -0.274 1.274 21 H -0.282 1.282 22 H -0.259 1.259 23 C -0.194 4.194 24 C -0.056 4.056 25 H 0.050 0.950 26 H 0.043 0.957 27 H 0.070 0.930 28 H 0.069 0.931 29 H 0.053 0.947 30 H 0.054 0.946 31 H 0.053 0.947 32 H 0.057 0.943 33 H 0.059 0.941 34 H 0.056 0.944 35 H 0.075 0.925 36 H 0.065 0.935 37 H 0.023 0.977 38 H 0.071 0.929 39 H 0.034 0.966 40 H 0.104 0.896 41 H 0.131 0.869 42 H 0.279 0.721 43 H 0.115 0.885 44 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.284 20.851 -2.420 21.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.109 4.109 3 C -0.204 4.204 4 C -0.025 4.025 5 H 0.097 0.903 6 C -0.248 4.248 7 N -0.248 5.248 8 C -0.131 4.131 9 C -0.016 4.016 10 C -0.169 4.169 11 C -0.086 4.086 12 C -0.240 4.240 13 C 0.108 3.892 14 O -0.124 6.124 15 C -0.464 4.464 16 H 0.123 0.877 17 C -0.140 4.140 18 N -0.519 5.519 19 Si 0.731 3.269 20 H -0.199 1.199 21 H -0.208 1.208 22 H -0.183 1.183 23 C -0.213 4.213 24 C -0.074 4.074 25 H 0.069 0.931 26 H 0.062 0.938 27 H 0.089 0.911 28 H 0.087 0.913 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.072 0.928 32 H 0.076 0.924 33 H 0.078 0.922 34 H 0.075 0.925 35 H 0.094 0.906 36 H 0.083 0.917 37 H 0.041 0.959 38 H 0.090 0.910 39 H 0.053 0.947 40 H 0.122 0.878 41 H 0.149 0.851 42 H 0.089 0.911 43 H 0.134 0.866 44 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 4.521 20.585 -2.352 21.206 hybrid contribution 0.364 -0.393 0.065 0.539 sum 4.885 20.192 -2.287 20.900 Atomic orbital electron populations 1.21719 0.94385 1.02956 1.00532 1.21185 0.96790 0.95326 0.97565 1.21875 1.00723 0.96129 1.01720 1.21796 0.91784 0.90376 0.98536 0.90266 1.22527 0.98034 1.02144 1.02082 1.62290 1.58762 1.01413 1.02346 1.22498 0.98337 0.99533 0.92722 1.20825 0.95831 0.92855 0.92126 1.19150 0.98065 0.93766 1.05912 1.20642 0.98239 0.92084 0.97605 1.21237 0.97549 0.99110 1.06153 1.19143 0.90787 0.86439 0.92809 1.83587 1.43088 1.13555 1.72139 1.20752 0.99882 0.83459 1.42297 0.87740 1.24467 0.99758 0.93802 0.96007 1.69651 1.38215 0.99764 1.44277 0.86179 0.82960 0.77680 0.80079 1.19910 1.20811 1.18331 1.20207 1.02358 0.91262 1.07491 1.20450 0.93506 0.96136 0.97344 0.93108 0.93795 0.91075 0.91294 0.92741 0.92731 0.92838 0.92436 0.92163 0.92502 0.90583 0.91651 0.95880 0.91046 0.94741 0.87772 0.85115 0.91086 0.86649 0.86973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.35 9.00 37.16 0.33 -1.02 16 2 C -0.09 -0.81 1.98 -90.62 -0.18 -0.99 16 3 C -0.15 -1.10 8.73 37.16 0.32 -0.78 16 4 C 0.08 0.83 1.95 -67.71 -0.13 0.70 16 5 H 0.08 0.79 8.08 -51.93 -0.42 0.37 16 6 C -0.19 -1.72 8.23 37.16 0.31 -1.41 16 7 N -0.53 -6.39 3.86 -236.33 -0.91 -7.30 16 8 C 0.02 0.21 8.16 60.07 0.49 0.70 16 9 C 0.11 1.45 4.48 -4.98 -0.02 1.43 16 10 C -0.17 -2.74 4.88 -104.58 -0.51 -3.25 16 11 C -0.07 -1.20 8.02 -39.61 -0.32 -1.52 16 12 C -0.22 -4.77 9.13 -39.40 -0.36 -5.13 16 13 C 0.16 3.72 6.65 -39.11 -0.26 3.46 16 14 O -0.22 -5.81 8.59 0.06 0.00 -5.81 16 15 C -0.39 -11.00 9.90 30.88 0.31 -10.69 16 16 H 0.11 3.03 5.53 -52.48 -0.29 2.74 16 17 C 0.06 1.77 5.49 -17.52 -0.10 1.67 16 18 N -0.88 -25.58 13.96 55.48 0.77 -24.81 16 19 Si 0.91 21.82 28.62 -169.99 -4.86 16.95 16 20 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 21 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 22 H -0.26 -6.26 7.11 56.52 0.40 -5.86 16 23 C -0.19 -3.87 9.99 -39.39 -0.39 -4.26 16 24 C -0.06 -0.95 9.69 -39.61 -0.38 -1.33 16 25 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 26 H 0.04 0.39 8.14 -51.93 -0.42 -0.04 16 27 H 0.07 0.83 7.42 -51.93 -0.39 0.44 16 28 H 0.07 0.65 6.42 -51.93 -0.33 0.32 16 29 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 31 H 0.05 0.38 6.88 -51.93 -0.36 0.02 16 32 H 0.06 0.54 6.58 -51.93 -0.34 0.20 16 33 H 0.06 0.47 6.67 -51.93 -0.35 0.13 16 34 H 0.06 0.54 6.69 -51.93 -0.35 0.19 16 35 H 0.08 1.09 6.33 -51.93 -0.33 0.76 16 36 H 0.06 0.72 6.00 -51.93 -0.31 0.41 16 37 H 0.02 0.27 6.67 -51.93 -0.35 -0.08 16 38 H 0.07 0.87 7.98 -51.93 -0.41 0.46 16 39 H 0.03 0.44 6.81 -51.93 -0.35 0.09 16 40 H 0.10 1.65 8.03 -52.48 -0.42 1.23 16 41 H 0.13 2.98 5.72 -52.48 -0.30 2.68 16 42 H 0.28 7.48 8.31 -40.82 -0.34 7.14 16 43 H 0.12 2.16 8.06 -52.49 -0.42 1.74 16 44 H 0.11 1.64 8.06 -52.49 -0.42 1.21 16 LS Contribution 341.45 15.07 5.15 5.15 Total: -1.00 -28.61 341.45 -7.72 -36.33 By element: Atomic # 1 Polarization: 8.90 SS G_CDS: -6.97 Total: 1.94 kcal Atomic # 6 Polarization: -21.55 SS G_CDS: -0.89 Total: -22.44 kcal Atomic # 7 Polarization: -31.97 SS G_CDS: -0.14 Total: -32.10 kcal Atomic # 8 Polarization: -5.81 SS G_CDS: 0.00 Total: -5.81 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -4.86 Total: 16.95 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -28.61 -7.72 -36.33 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264574664.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.360 kcal (2) G-P(sol) polarization free energy of solvation -28.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.327 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds