Wall clock time and date at job start Mon Mar 30 2020 01:55:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46898 * 109.47057 * 2 1 4 4 C 1.46900 * 110.99602 * 165.35872 * 3 2 1 5 5 C 1.50704 * 109.47284 * 288.40038 * 4 3 2 6 6 C 1.38298 * 119.92649 * 90.00213 * 5 4 3 7 7 C 1.38101 * 120.06271 * 179.97438 * 6 5 4 8 8 C 1.38873 * 119.93757 * 0.02562 * 7 6 5 9 9 O 1.35750 * 120.07138 * 180.02562 * 8 7 6 10 10 C 1.34828 * 117.00081 * 354.24308 * 9 8 7 11 11 H 1.07992 * 119.99664 * 354.51852 * 10 9 8 12 12 C 1.38661 * 119.99762 * 174.51764 * 10 9 8 13 13 N 1.31557 * 120.00001 * 359.97438 * 12 10 9 14 14 Si 1.86793 * 119.99609 * 180.02562 * 12 10 9 15 15 H 1.48502 * 109.47424 * 60.00009 * 14 12 10 16 16 H 1.48504 * 109.47095 * 179.97438 * 14 12 10 17 17 H 1.48500 * 109.47416 * 299.99860 * 14 12 10 18 18 C 1.38879 * 119.85760 * 0.27199 * 8 7 6 19 19 C 1.38106 * 119.93011 * 359.45665 * 18 8 7 20 20 C 1.46904 * 110.99951 * 289.30892 * 3 2 1 21 21 C 1.52997 * 109.46772 * 146.97360 * 20 3 2 22 22 C 1.53005 * 109.47473 * 67.03721 * 21 20 3 23 23 C 1.52999 * 109.47207 * 187.03612 * 21 20 3 24 24 H 1.09001 * 109.47453 * 186.72683 * 1 2 3 25 25 H 1.09007 * 109.46957 * 306.71743 * 1 2 3 26 26 H 1.08994 * 109.47581 * 66.72279 * 1 2 3 27 27 H 1.08999 * 109.46556 * 240.00059 * 2 1 3 28 28 H 1.08994 * 109.47383 * 120.00659 * 2 1 3 29 29 H 1.09005 * 109.46998 * 168.40740 * 4 3 2 30 30 H 1.08992 * 109.47681 * 48.40764 * 4 3 2 31 31 H 1.07994 * 119.97248 * 359.97438 * 6 5 4 32 32 H 1.08011 * 120.02962 * 179.97438 * 7 6 5 33 33 H 0.96996 * 119.99435 * 179.97438 * 13 12 10 34 34 H 1.08005 * 120.03515 * 179.72407 * 18 8 7 35 35 H 1.08000 * 119.96382 * 180.27361 * 19 18 8 36 36 H 1.08996 * 109.47152 * 266.97041 * 20 3 2 37 37 H 1.08997 * 109.47286 * 26.97410 * 20 3 2 38 38 H 1.09001 * 109.47381 * 307.03259 * 21 20 3 39 39 H 1.09003 * 109.46788 * 42.20500 * 22 21 20 40 40 H 1.08993 * 109.47348 * 162.21055 * 22 21 20 41 41 H 1.09002 * 109.46536 * 282.20744 * 22 21 20 42 42 H 1.08998 * 109.47564 * 59.99581 * 23 21 20 43 43 H 1.09002 * 109.47234 * 180.02562 * 23 21 20 44 44 H 1.09004 * 109.47166 * 300.00070 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 3.4461 1.4389 0.3467 5 6 3.6197 1.1244 1.8102 6 6 3.8072 -0.1840 2.2173 7 6 3.9671 -0.4754 3.5577 8 6 3.9389 0.5468 4.4973 9 8 4.0963 0.2636 5.8155 10 6 4.1563 -1.0389 6.1588 11 1 3.9916 -1.8021 5.4127 12 6 4.4296 -1.3984 7.4699 13 7 4.6308 -0.4687 8.3786 14 14 4.5134 -3.2029 7.9453 15 1 5.5808 -3.8728 7.1597 16 1 4.8186 -3.3194 9.3939 17 1 3.2082 -3.8511 7.6602 18 6 3.7443 1.8589 4.0859 19 6 3.5906 2.1446 2.7435 20 6 1.7675 2.0325 -1.2943 21 6 1.4920 3.5213 -1.0746 22 6 2.7637 4.2064 -0.5702 23 6 1.0582 4.1600 -2.3954 24 1 -0.3634 -1.0206 0.1204 25 1 -0.3633 0.6145 0.8238 26 1 -0.3634 0.4061 -0.9439 27 1 1.8932 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8899 29 1 3.8324 2.4374 0.1414 30 1 3.9928 0.7083 -0.2493 31 1 3.8286 -0.9786 1.4862 32 1 4.1130 -1.4975 3.8750 33 1 4.8215 -0.7202 9.2957 34 1 3.7174 2.6556 4.8146 35 1 3.4436 3.1653 2.4225 36 1 2.6413 1.9155 -1.9354 37 1 0.9031 1.5693 -1.7701 38 1 0.6987 3.6389 -0.3364 39 1 3.6226 3.8348 -1.1291 40 1 2.6766 5.2836 -0.7117 41 1 2.8978 3.9888 0.4894 42 1 0.1522 3.6720 -2.7549 43 1 0.8623 5.2208 -2.2390 44 1 1.8514 4.0425 -3.1337 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000265053991.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:58 Heat of formation + Delta-G solvation = -12.076791 kcal Electronic energy + Delta-G solvation = -21618.347073 eV Core-core repulsion = 18536.038137 eV Total energy + Delta-G solvation = -3082.308936 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.31097 -38.29963 -36.34871 -34.62708 -32.33213 -31.18469 -30.14837 -29.17382 -27.28109 -26.18237 -25.17206 -23.91485 -21.99235 -21.18393 -20.15980 -20.07203 -17.94369 -16.90606 -15.96470 -15.45961 -15.19430 -14.58574 -14.45578 -14.21171 -14.04725 -13.63792 -13.53647 -13.41104 -12.87551 -12.66705 -12.65156 -12.44924 -12.26592 -11.91811 -11.73754 -11.66901 -11.43943 -11.22501 -11.00325 -10.85944 -10.84555 -10.68157 -10.61416 -10.49905 -10.38724 -10.11541 -9.32182 -8.79769 -8.17125 -8.08740 -7.12349 -6.42404 -4.01071 2.26878 2.34458 3.14457 3.15108 3.18122 3.98687 4.03585 4.66557 4.82010 4.88749 5.02032 5.13415 5.18723 5.29214 5.29678 5.32279 5.45154 5.51662 5.54177 5.58607 5.61422 5.72347 5.75120 5.79504 5.86645 5.90509 5.94903 5.97792 6.05271 6.15225 6.24883 6.30407 6.31823 6.35501 6.49384 6.76826 6.95339 7.07687 7.23654 7.25370 7.34335 7.46359 7.49168 7.88427 8.02782 9.03325 9.74729 10.75798 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.030424 B = 0.003592 C = 0.003358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 920.097460 B = 7793.251275 C = 8336.398438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.046 3.954 3 N -0.530 5.530 4 C 0.100 3.900 5 C -0.173 4.173 6 C -0.068 4.068 7 C -0.233 4.233 8 C 0.155 3.845 9 O -0.179 6.179 10 C -0.391 4.391 11 H 0.090 0.910 12 C 0.039 3.961 13 N -0.864 5.864 14 Si 0.940 3.060 15 H -0.270 1.270 16 H -0.278 1.278 17 H -0.270 1.270 18 C -0.194 4.194 19 C -0.054 4.054 20 C 0.056 3.944 21 C -0.089 4.089 22 C -0.149 4.149 23 C -0.146 4.146 24 H 0.054 0.946 25 H 0.064 0.936 26 H 0.047 0.953 27 H 0.025 0.975 28 H 0.084 0.916 29 H 0.085 0.915 30 H 0.028 0.972 31 H 0.101 0.899 32 H 0.125 0.875 33 H 0.270 0.730 34 H 0.115 0.885 35 H 0.110 0.890 36 H 0.035 0.965 37 H 0.067 0.933 38 H 0.078 0.922 39 H 0.049 0.951 40 H 0.049 0.951 41 H 0.066 0.934 42 H 0.051 0.949 43 H 0.054 0.946 44 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.224 4.080 -18.536 19.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.082 4.082 3 N -0.254 5.254 4 C -0.026 4.026 5 C -0.174 4.174 6 C -0.087 4.087 7 C -0.253 4.253 8 C 0.101 3.899 9 O -0.083 6.083 10 C -0.467 4.467 11 H 0.108 0.892 12 C -0.165 4.165 13 N -0.499 5.499 14 Si 0.765 3.235 15 H -0.196 1.196 16 H -0.203 1.203 17 H -0.195 1.195 18 C -0.213 4.213 19 C -0.073 4.073 20 C -0.072 4.072 21 C -0.108 4.108 22 C -0.206 4.206 23 C -0.204 4.204 24 H 0.073 0.927 25 H 0.083 0.917 26 H 0.066 0.934 27 H 0.043 0.957 28 H 0.102 0.898 29 H 0.103 0.897 30 H 0.047 0.953 31 H 0.120 0.880 32 H 0.142 0.858 33 H 0.080 0.920 34 H 0.133 0.867 35 H 0.128 0.872 36 H 0.053 0.947 37 H 0.085 0.915 38 H 0.096 0.904 39 H 0.068 0.932 40 H 0.068 0.932 41 H 0.085 0.915 42 H 0.070 0.930 43 H 0.073 0.927 44 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -5.405 4.479 -17.719 19.059 hybrid contribution 0.510 -1.493 -0.389 1.625 sum -4.895 2.986 -18.109 18.995 Atomic orbital electron populations 1.21775 0.95310 1.01345 1.01824 1.22168 0.95776 0.89307 1.00962 1.62037 1.17446 1.16671 1.29240 1.21122 0.87226 1.01192 0.93060 1.19087 1.11010 0.93397 0.93914 1.20586 0.98097 0.95106 0.94869 1.21115 1.11396 0.99869 0.92889 1.19398 0.92324 0.93153 0.85029 1.83992 1.78321 1.28160 1.17788 1.21254 1.50217 0.80160 0.95106 0.89248 1.25274 0.96424 1.00076 0.94734 1.70029 1.44241 1.32968 1.02639 0.85802 0.79104 0.80638 0.78007 1.19557 1.20290 1.19514 1.20210 1.10939 0.94461 0.95703 1.20426 0.97423 0.97703 0.91715 1.22252 0.99996 0.94743 0.90207 1.21085 0.98608 0.94034 0.97117 1.22009 0.97009 0.99548 1.02027 1.21843 1.00807 1.00449 0.97320 0.92686 0.91653 0.93406 0.95695 0.89755 0.89727 0.95337 0.88049 0.85761 0.92009 0.86665 0.87232 0.94683 0.91464 0.90406 0.93181 0.93233 0.91463 0.92980 0.92674 0.93062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.64 9.86 37.16 0.37 -1.27 16 2 C 0.05 0.58 5.45 -3.83 -0.02 0.56 16 3 N -0.53 -6.84 4.25 -236.08 -1.00 -7.84 16 4 C 0.10 1.39 4.51 -4.97 -0.02 1.37 16 5 C -0.17 -2.96 5.08 -104.58 -0.53 -3.49 16 6 C -0.07 -1.25 8.07 -39.61 -0.32 -1.57 16 7 C -0.23 -5.12 9.13 -39.40 -0.36 -5.47 16 8 C 0.15 3.78 6.65 -39.11 -0.26 3.52 16 9 O -0.18 -5.18 9.76 0.05 0.00 -5.18 16 10 C -0.39 -11.04 9.44 30.89 0.29 -10.75 16 11 H 0.09 2.34 5.30 -52.49 -0.28 2.06 16 12 C 0.04 1.08 5.49 -17.51 -0.10 0.99 16 13 N -0.86 -25.55 13.67 55.48 0.76 -24.80 16 14 Si 0.94 20.67 29.55 -169.99 -5.02 15.65 16 15 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 16 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 17 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 18 C -0.19 -4.16 9.99 -39.39 -0.39 -4.55 16 19 C -0.05 -0.98 9.69 -39.61 -0.38 -1.36 16 20 C 0.06 0.60 4.48 -3.82 -0.02 0.58 16 21 C -0.09 -0.88 3.11 -90.62 -0.28 -1.17 16 22 C -0.15 -1.49 7.72 37.16 0.29 -1.21 16 23 C -0.15 -1.18 9.11 37.16 0.34 -0.84 16 24 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 25 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 26 H 0.05 0.48 6.73 -51.93 -0.35 0.13 16 27 H 0.02 0.29 8.07 -51.93 -0.42 -0.13 16 28 H 0.08 1.23 5.40 -51.93 -0.28 0.95 16 29 H 0.08 1.08 4.38 -51.93 -0.23 0.85 16 30 H 0.03 0.39 8.00 -51.93 -0.42 -0.03 16 31 H 0.10 1.62 7.60 -52.49 -0.40 1.23 16 32 H 0.12 2.74 5.72 -52.48 -0.30 2.44 16 33 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 34 H 0.12 2.40 8.06 -52.48 -0.42 1.98 16 35 H 0.11 1.70 7.19 -52.49 -0.38 1.33 16 36 H 0.03 0.37 7.66 -51.93 -0.40 -0.03 16 37 H 0.07 0.67 6.20 -51.93 -0.32 0.35 16 38 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 39 H 0.05 0.48 7.17 -51.93 -0.37 0.11 16 40 H 0.05 0.45 8.01 -51.93 -0.42 0.03 16 41 H 0.07 0.77 6.17 -51.93 -0.32 0.45 16 42 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 43 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 44 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 LS Contribution 345.15 15.07 5.20 5.20 Total: -1.00 -29.84 345.15 -8.44 -38.28 By element: Atomic # 1 Polarization: 10.32 SS G_CDS: -6.97 Total: 3.35 kcal Atomic # 6 Polarization: -23.27 SS G_CDS: -1.40 Total: -24.67 kcal Atomic # 7 Polarization: -32.39 SS G_CDS: -0.24 Total: -32.63 kcal Atomic # 8 Polarization: -5.18 SS G_CDS: 0.00 Total: -5.18 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.65 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -29.84 -8.44 -38.28 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000265053991.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.203 kcal (2) G-P(sol) polarization free energy of solvation -29.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.279 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds