Wall clock time and date at job start Mon Mar 30 2020 01:55:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46898 * 109.47057 * 2 1 4 4 C 1.46900 * 110.99602 * 165.35872 * 3 2 1 5 5 C 1.50704 * 109.47284 * 288.40038 * 4 3 2 6 6 C 1.38298 * 119.92649 * 90.00213 * 5 4 3 7 7 C 1.38101 * 120.06271 * 179.97438 * 6 5 4 8 8 C 1.38873 * 119.93757 * 0.02562 * 7 6 5 9 9 O 1.35750 * 120.07138 * 180.02562 * 8 7 6 10 10 C 1.34828 * 117.00081 * 354.24308 * 9 8 7 11 11 H 1.07992 * 119.99664 * 354.51852 * 10 9 8 12 12 C 1.38661 * 119.99762 * 174.51764 * 10 9 8 13 13 N 1.31557 * 120.00001 * 359.97438 * 12 10 9 14 14 Si 1.86793 * 119.99609 * 180.02562 * 12 10 9 15 15 H 1.48502 * 109.47424 * 60.00009 * 14 12 10 16 16 H 1.48504 * 109.47095 * 179.97438 * 14 12 10 17 17 H 1.48500 * 109.47416 * 299.99860 * 14 12 10 18 18 C 1.38879 * 119.85760 * 0.27199 * 8 7 6 19 19 C 1.38106 * 119.93011 * 359.45665 * 18 8 7 20 20 C 1.46904 * 110.99951 * 289.30892 * 3 2 1 21 21 C 1.52997 * 109.46772 * 146.97360 * 20 3 2 22 22 C 1.53005 * 109.47473 * 67.03721 * 21 20 3 23 23 C 1.52999 * 109.47207 * 187.03612 * 21 20 3 24 24 H 1.09001 * 109.47453 * 186.72683 * 1 2 3 25 25 H 1.09007 * 109.46957 * 306.71743 * 1 2 3 26 26 H 1.08994 * 109.47581 * 66.72279 * 1 2 3 27 27 H 1.08999 * 109.46556 * 240.00059 * 2 1 3 28 28 H 1.08994 * 109.47383 * 120.00659 * 2 1 3 29 29 H 1.09005 * 109.46998 * 168.40740 * 4 3 2 30 30 H 1.08992 * 109.47681 * 48.40764 * 4 3 2 31 31 H 1.07994 * 119.97248 * 359.97438 * 6 5 4 32 32 H 1.08011 * 120.02962 * 179.97438 * 7 6 5 33 33 H 0.96996 * 119.99435 * 179.97438 * 13 12 10 34 34 H 1.08005 * 120.03515 * 179.72407 * 18 8 7 35 35 H 1.08000 * 119.96382 * 180.27361 * 19 18 8 36 36 H 1.08996 * 109.47152 * 266.97041 * 20 3 2 37 37 H 1.08997 * 109.47286 * 26.97410 * 20 3 2 38 38 H 1.09001 * 109.47381 * 307.03259 * 21 20 3 39 39 H 1.09003 * 109.46788 * 42.20500 * 22 21 20 40 40 H 1.08993 * 109.47348 * 162.21055 * 22 21 20 41 41 H 1.09002 * 109.46536 * 282.20744 * 22 21 20 42 42 H 1.08998 * 109.47564 * 59.99581 * 23 21 20 43 43 H 1.09002 * 109.47234 * 180.02562 * 23 21 20 44 44 H 1.09004 * 109.47166 * 300.00070 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 3.4461 1.4389 0.3467 5 6 3.6197 1.1244 1.8102 6 6 3.8072 -0.1840 2.2173 7 6 3.9671 -0.4754 3.5577 8 6 3.9389 0.5468 4.4973 9 8 4.0963 0.2636 5.8155 10 6 4.1563 -1.0389 6.1588 11 1 3.9916 -1.8021 5.4127 12 6 4.4296 -1.3984 7.4699 13 7 4.6308 -0.4687 8.3786 14 14 4.5134 -3.2029 7.9453 15 1 5.5808 -3.8728 7.1597 16 1 4.8186 -3.3194 9.3939 17 1 3.2082 -3.8511 7.6602 18 6 3.7443 1.8589 4.0859 19 6 3.5906 2.1446 2.7435 20 6 1.7675 2.0325 -1.2943 21 6 1.4920 3.5213 -1.0746 22 6 2.7637 4.2064 -0.5702 23 6 1.0582 4.1600 -2.3954 24 1 -0.3634 -1.0206 0.1204 25 1 -0.3633 0.6145 0.8238 26 1 -0.3634 0.4061 -0.9439 27 1 1.8932 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8899 29 1 3.8324 2.4374 0.1414 30 1 3.9928 0.7083 -0.2493 31 1 3.8286 -0.9786 1.4862 32 1 4.1130 -1.4975 3.8750 33 1 4.8215 -0.7202 9.2957 34 1 3.7174 2.6556 4.8146 35 1 3.4436 3.1653 2.4225 36 1 2.6413 1.9155 -1.9354 37 1 0.9031 1.5693 -1.7701 38 1 0.6987 3.6389 -0.3364 39 1 3.6226 3.8348 -1.1291 40 1 2.6766 5.2836 -0.7117 41 1 2.8978 3.9888 0.4894 42 1 0.1522 3.6720 -2.7549 43 1 0.8623 5.2208 -2.2390 44 1 1.8514 4.0425 -3.1337 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000265053991.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:58 Heat of formation + Delta-G solvation = -29.166865 kcal Electronic energy + Delta-G solvation = -21619.088154 eV Core-core repulsion = 18536.038137 eV Total energy + Delta-G solvation = -3083.050017 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.88229 -39.59969 -37.92315 -35.52596 -34.30811 -32.45275 -31.78804 -30.40095 -28.07157 -27.66429 -26.70040 -25.08185 -23.62465 -22.44385 -21.52489 -20.87446 -19.81947 -18.78915 -16.98292 -16.60517 -16.48465 -16.30770 -15.83993 -15.51938 -15.48536 -15.06190 -14.88338 -14.50378 -14.35125 -14.08871 -13.74580 -13.57386 -13.39429 -13.14483 -12.94948 -12.74813 -12.65331 -12.51953 -12.37077 -12.31735 -12.14496 -12.08145 -11.76159 -11.51250 -11.40160 -11.21470 -11.11744 -10.77063 -9.73905 -9.15584 -8.85989 -8.46483 -6.14486 0.62160 0.71229 1.34493 1.45349 1.50894 2.18264 2.76169 3.05752 3.34581 3.53665 4.00337 4.02613 4.05578 4.13027 4.20288 4.24501 4.34157 4.39457 4.56811 4.62300 4.65880 4.69862 4.72740 4.81523 4.82934 4.87448 4.95874 5.05825 5.08256 5.11622 5.14880 5.18915 5.20007 5.32525 5.35467 5.40259 5.54467 5.57474 5.62952 5.73390 5.84030 6.03663 6.21392 6.27637 6.36064 6.98214 7.80235 8.76874 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.030424 B = 0.003592 C = 0.003358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 920.097460 B = 7793.251275 C = 8336.398438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.043 3.957 3 N -0.541 5.541 4 C 0.103 3.897 5 C -0.147 4.147 6 C -0.064 4.064 7 C -0.242 4.242 8 C 0.113 3.887 9 O -0.234 6.234 10 C -0.413 4.413 11 H 0.099 0.901 12 C -0.023 4.023 13 N -0.922 5.922 14 Si 1.018 2.982 15 H -0.257 1.257 16 H -0.271 1.271 17 H -0.258 1.258 18 C -0.205 4.205 19 C -0.048 4.048 20 C 0.058 3.942 21 C -0.088 4.088 22 C -0.149 4.149 23 C -0.142 4.142 24 H 0.062 0.938 25 H 0.047 0.953 26 H 0.063 0.937 27 H 0.040 0.960 28 H 0.063 0.937 29 H 0.100 0.900 30 H 0.041 0.959 31 H 0.132 0.868 32 H 0.116 0.884 33 H 0.273 0.727 34 H 0.111 0.889 35 H 0.142 0.858 36 H 0.044 0.956 37 H 0.076 0.924 38 H 0.062 0.938 39 H 0.055 0.945 40 H 0.057 0.943 41 H 0.051 0.949 42 H 0.057 0.943 43 H 0.058 0.942 44 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.752 3.661 -22.140 23.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.084 4.084 3 N -0.266 5.266 4 C -0.023 4.023 5 C -0.148 4.148 6 C -0.082 4.082 7 C -0.261 4.261 8 C 0.063 3.937 9 O -0.141 6.141 10 C -0.489 4.489 11 H 0.117 0.883 12 C -0.220 4.220 13 N -0.560 5.560 14 Si 0.837 3.163 15 H -0.181 1.181 16 H -0.196 1.196 17 H -0.182 1.182 18 C -0.225 4.225 19 C -0.067 4.067 20 C -0.069 4.069 21 C -0.107 4.107 22 C -0.206 4.206 23 C -0.200 4.200 24 H 0.081 0.919 25 H 0.066 0.934 26 H 0.082 0.918 27 H 0.058 0.942 28 H 0.081 0.919 29 H 0.118 0.882 30 H 0.060 0.940 31 H 0.150 0.850 32 H 0.134 0.866 33 H 0.082 0.918 34 H 0.129 0.871 35 H 0.160 0.840 36 H 0.062 0.938 37 H 0.094 0.906 38 H 0.081 0.919 39 H 0.074 0.926 40 H 0.076 0.924 41 H 0.070 0.930 42 H 0.076 0.924 43 H 0.077 0.923 44 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -5.948 4.080 -21.391 22.575 hybrid contribution 0.596 -1.180 0.384 1.377 sum -5.351 2.900 -21.008 21.872 Atomic orbital electron populations 1.21730 0.94458 1.01672 1.01929 1.22181 0.96530 0.89132 1.00589 1.61965 1.16425 1.17058 1.31127 1.21129 0.88420 1.02515 0.90255 1.19599 1.06725 0.92479 0.96020 1.20903 0.96761 0.96745 0.93792 1.21206 1.11753 0.98976 0.94147 1.19919 0.94332 0.95021 0.84426 1.83949 1.81334 1.28567 1.20214 1.21751 1.50618 0.80606 0.95970 0.88320 1.26585 0.95697 1.05495 0.94262 1.70180 1.46894 1.35749 1.03172 0.84664 0.79831 0.73948 0.77874 1.18134 1.19569 1.18195 1.20456 1.11190 0.93433 0.97377 1.20790 0.95890 0.99728 0.90246 1.22303 1.00755 0.94843 0.89004 1.21063 0.98083 0.93816 0.97750 1.21996 0.97302 1.00267 1.01015 1.21796 1.01257 1.00579 0.96334 0.91867 0.93431 0.91828 0.94175 0.91895 0.88167 0.94042 0.84978 0.86598 0.91845 0.87104 0.84042 0.93751 0.90555 0.91905 0.92554 0.92409 0.93012 0.92428 0.92287 0.92357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.82 9.86 71.98 0.71 -2.11 16 2 C 0.04 0.97 5.45 86.30 0.47 1.44 16 3 N -0.54 -12.15 4.25 -900.81 -3.83 -15.98 16 4 C 0.10 2.47 4.51 85.56 0.39 2.86 16 5 C -0.15 -4.69 5.08 -19.84 -0.10 -4.79 16 6 C -0.06 -2.24 8.07 22.25 0.18 -2.06 16 7 C -0.24 -10.77 9.13 22.39 0.20 -10.57 16 8 C 0.11 5.79 6.65 22.58 0.15 5.94 16 9 O -0.23 -14.42 9.76 -22.73 -0.22 -14.64 16 10 C -0.41 -24.55 9.44 67.92 0.64 -23.91 16 11 H 0.10 5.39 5.30 -2.91 -0.02 5.37 16 12 C -0.02 -1.33 5.49 84.84 0.47 -0.87 16 13 N -0.92 -57.46 13.67 21.62 0.30 -57.16 16 14 Si 1.02 43.42 29.55 68.60 2.03 45.44 16 15 H -0.26 -10.27 7.11 99.48 0.71 -9.56 16 16 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 17 H -0.26 -10.33 7.11 99.48 0.71 -9.62 16 18 C -0.21 -9.03 9.99 22.39 0.22 -8.80 16 19 C -0.05 -1.67 9.69 22.25 0.22 -1.46 16 20 C 0.06 1.02 4.48 86.30 0.39 1.40 16 21 C -0.09 -1.46 3.11 -10.79 -0.03 -1.50 16 22 C -0.15 -2.51 7.72 71.98 0.56 -1.95 16 23 C -0.14 -1.81 9.11 71.98 0.66 -1.15 16 24 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 25 H 0.05 1.12 8.14 -2.38 -0.02 1.10 16 26 H 0.06 1.07 6.73 -2.39 -0.02 1.05 16 27 H 0.04 0.78 8.07 -2.39 -0.02 0.76 16 28 H 0.06 1.67 5.40 -2.39 -0.01 1.66 16 29 H 0.10 2.14 4.38 -2.38 -0.01 2.13 16 30 H 0.04 0.93 8.00 -2.39 -0.02 0.91 16 31 H 0.13 3.84 7.60 -2.91 -0.02 3.82 16 32 H 0.12 5.27 5.72 -2.90 -0.02 5.25 16 33 H 0.27 15.57 8.31 -92.71 -0.77 14.80 16 34 H 0.11 4.85 8.06 -2.91 -0.02 4.82 16 35 H 0.14 4.02 7.19 -2.91 -0.02 4.00 16 36 H 0.04 0.72 7.66 -2.39 -0.02 0.70 16 37 H 0.08 1.22 6.20 -2.39 -0.01 1.20 16 38 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 39 H 0.06 0.88 7.17 -2.39 -0.02 0.86 16 40 H 0.06 0.87 8.01 -2.39 -0.02 0.86 16 41 H 0.05 1.03 6.17 -2.39 -0.01 1.01 16 42 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 43 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 44 H 0.06 0.67 8.14 -2.38 -0.02 0.66 16 Total: -1.00 -69.13 345.15 4.36 -64.77 By element: Atomic # 1 Polarization: 24.12 SS G_CDS: 0.97 Total: 25.09 kcal Atomic # 6 Polarization: -52.63 SS G_CDS: 5.11 Total: -47.52 kcal Atomic # 7 Polarization: -69.61 SS G_CDS: -3.53 Total: -73.14 kcal Atomic # 8 Polarization: -14.42 SS G_CDS: -0.22 Total: -14.64 kcal Atomic # 14 Polarization: 43.42 SS G_CDS: 2.03 Total: 45.44 kcal Total: -69.13 4.36 -64.77 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000265053991.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.601 kcal (2) G-P(sol) polarization free energy of solvation -69.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.768 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds