Wall clock time and date at job start Mon Mar 30 2020 01:57:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46903 * 109.47203 * 2 1 4 4 C 1.46903 * 110.99556 * 199.75230 * 3 2 1 5 5 C 1.50696 * 109.47390 * 66.04547 * 4 3 2 6 6 H 1.08002 * 119.99996 * 359.97438 * 5 4 3 7 7 C 1.37882 * 120.00081 * 179.97438 * 5 4 3 8 8 N 1.31512 * 119.99700 * 359.97438 * 7 5 4 9 9 Si 1.86801 * 119.99892 * 180.02562 * 7 5 4 10 10 H 1.48493 * 109.47154 * 89.99729 * 9 7 5 11 11 H 1.48507 * 109.47006 * 210.00246 * 9 7 5 12 12 H 1.48501 * 109.47094 * 329.99605 * 9 7 5 13 13 C 1.46897 * 110.99989 * 75.79932 * 3 2 1 14 14 C 1.53004 * 109.46912 * 199.64491 * 13 3 2 15 15 C 1.52996 * 109.46990 * 174.87057 * 14 13 3 16 16 C 1.50701 * 109.47163 * 179.97438 * 15 14 13 17 17 C 1.38279 * 119.97643 * 270.03061 * 16 15 14 18 18 C 1.38246 * 120.11336 * 180.02562 * 17 16 15 19 19 C 1.38166 * 120.05724 * 359.67002 * 18 17 16 20 20 C 1.38717 * 119.93637 * 0.58109 * 19 18 17 21 21 O 1.35901 * 120.04830 * 179.72229 * 20 19 18 22 22 C 1.42898 * 117.00509 * 359.72067 * 21 20 19 23 23 C 1.38130 * 119.97070 * 90.00328 * 16 15 14 24 24 H 1.09006 * 109.46605 * 54.85111 * 1 2 3 25 25 H 1.08993 * 109.47636 * 174.84840 * 1 2 3 26 26 H 1.08994 * 109.47172 * 294.85761 * 1 2 3 27 27 H 1.09002 * 109.47233 * 239.99848 * 2 1 3 28 28 H 1.08999 * 109.47039 * 119.99821 * 2 1 3 29 29 H 1.09004 * 109.47092 * 186.04508 * 4 3 2 30 30 H 1.09000 * 109.47239 * 306.04480 * 4 3 2 31 31 H 0.97004 * 119.99748 * 179.97438 * 8 7 5 32 32 H 1.09000 * 109.47183 * 79.64880 * 13 3 2 33 33 H 1.09001 * 109.47076 * 319.64378 * 13 3 2 34 34 H 1.08999 * 109.46651 * 54.87539 * 14 13 3 35 35 H 1.08997 * 109.47271 * 294.87563 * 14 13 3 36 36 H 1.08999 * 109.47030 * 60.00714 * 15 14 13 37 37 H 1.08997 * 109.47526 * 300.00349 * 15 14 13 38 38 H 1.08007 * 119.94508 * 359.97438 * 17 16 15 39 39 H 1.08000 * 119.97010 * 179.97438 * 18 17 16 40 40 H 1.07995 * 120.03287 * 180.30192 * 19 18 17 41 41 H 1.09000 * 109.46988 * 300.00566 * 22 21 20 42 42 H 1.09000 * 109.47195 * 60.00318 * 22 21 20 43 43 H 1.08995 * 109.47405 * 180.02562 * 22 21 20 44 44 H 1.08003 * 120.02059 * 0.02562 * 23 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4121 1.4510 -0.4635 5 6 3.4785 1.0472 -1.9138 6 1 2.5765 0.7690 -2.4387 7 6 4.6907 1.0330 -2.5708 8 7 5.7888 1.3723 -1.9317 9 14 4.7728 0.5332 -4.3688 10 1 4.6044 1.7348 -5.2248 11 1 6.0897 -0.0936 -4.6487 12 1 3.6895 -0.4393 -4.6622 13 6 1.8780 1.9935 1.3295 14 6 1.9209 3.5174 1.2001 15 6 1.6459 4.1530 2.5643 16 6 1.6888 5.6540 2.4370 17 6 2.8815 6.3292 2.6205 18 6 2.9241 7.7061 2.5049 19 6 1.7756 8.4107 2.1989 20 6 0.5768 7.7362 2.0195 21 8 -0.5553 8.4274 1.7239 22 6 -0.4395 9.8479 1.6190 23 6 0.5367 6.3543 2.1365 24 1 -0.3633 0.5917 -0.8403 25 1 -0.3634 -1.0234 -0.0923 26 1 -0.3633 0.4320 0.9324 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 3.7841 2.4695 -0.3525 30 1 4.0253 0.7734 0.1307 31 1 6.6417 1.3619 -2.3937 32 1 2.6941 1.6602 1.9705 33 1 0.9261 1.6927 1.7671 34 1 1.1626 3.8430 0.4880 35 1 2.9057 3.8246 0.8480 36 1 2.4042 3.8274 3.2763 37 1 0.6611 3.8459 2.9164 38 1 3.7814 5.7799 2.8554 39 1 3.8568 8.2311 2.6491 40 1 1.8103 9.4859 2.1039 41 1 -0.0869 10.2546 2.5667 42 1 0.2701 10.0972 0.8301 43 1 -1.4134 10.2752 1.3804 44 1 -0.3946 5.8265 1.9932 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000267055014.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:57:40 Heat of formation + Delta-G solvation = -27.318977 kcal Electronic energy + Delta-G solvation = -21018.006832 eV Core-core repulsion = 17935.036946 eV Total energy + Delta-G solvation = -3082.969887 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.16772 -37.92091 -37.00081 -33.89740 -32.55424 -30.90416 -30.29381 -29.24644 -27.47183 -26.72032 -24.68528 -22.54198 -22.41059 -21.76234 -20.53422 -19.55420 -17.74724 -16.44681 -16.29241 -15.98113 -15.84569 -15.05785 -14.63482 -14.31818 -14.16121 -13.80387 -13.72815 -13.26052 -13.17936 -12.81598 -12.43391 -12.13148 -12.01165 -11.84192 -11.62515 -11.53452 -11.15489 -11.05732 -10.96948 -10.87278 -10.65889 -10.60577 -10.48657 -10.17367 -10.00233 -9.59134 -9.11776 -8.73944 -8.38836 -8.18772 -7.15765 -5.98793 -3.99316 1.34381 1.47841 3.16816 3.34681 3.40395 3.44106 3.77637 4.46075 4.72115 4.76719 4.94022 4.96387 4.97250 5.12205 5.24901 5.27387 5.36756 5.40073 5.50204 5.62998 5.69150 5.79109 5.82373 5.94949 6.01640 6.08605 6.14227 6.21027 6.26008 6.30657 6.42727 6.45236 6.57688 6.73152 6.76904 6.82017 6.86920 6.87910 7.34951 7.38514 7.42465 7.86766 8.17902 8.29914 8.63168 9.08860 9.64543 11.12133 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.016284 B = 0.003595 C = 0.003307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1719.117868 B = 7787.725248 C = 8465.261660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.056 3.944 3 N -0.538 5.538 4 C 0.192 3.808 5 C -0.506 4.506 6 H 0.063 0.937 7 C 0.055 3.945 8 N -0.899 5.899 9 Si 0.896 3.104 10 H -0.280 1.280 11 H -0.288 1.288 12 H -0.274 1.274 13 C 0.057 3.943 14 C -0.105 4.105 15 C -0.081 4.081 16 C -0.031 4.031 17 C -0.152 4.152 18 C -0.079 4.079 19 C -0.218 4.218 20 C 0.124 3.876 21 O -0.319 6.319 22 C 0.029 3.971 23 C -0.149 4.149 24 H 0.059 0.941 25 H 0.045 0.955 26 H 0.042 0.958 27 H 0.084 0.916 28 H 0.016 0.984 29 H 0.032 0.968 30 H -0.012 1.012 31 H 0.260 0.740 32 H 0.023 0.977 33 H 0.058 0.942 34 H 0.069 0.931 35 H 0.068 0.932 36 H 0.072 0.928 37 H 0.071 0.929 38 H 0.125 0.875 39 H 0.123 0.877 40 H 0.123 0.877 41 H 0.053 0.947 42 H 0.055 0.945 43 H 0.097 0.903 44 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.819 12.429 10.804 19.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.073 4.073 3 N -0.263 5.263 4 C 0.067 3.933 5 C -0.544 4.544 6 H 0.081 0.919 7 C -0.146 4.146 8 N -0.539 5.539 9 Si 0.724 3.276 10 H -0.207 1.207 11 H -0.214 1.214 12 H -0.199 1.199 13 C -0.072 4.072 14 C -0.143 4.143 15 C -0.119 4.119 16 C -0.032 4.032 17 C -0.170 4.170 18 C -0.098 4.098 19 C -0.237 4.237 20 C 0.079 3.921 21 O -0.233 6.233 22 C -0.067 4.067 23 C -0.167 4.167 24 H 0.078 0.922 25 H 0.064 0.936 26 H 0.061 0.939 27 H 0.102 0.898 28 H 0.034 0.966 29 H 0.050 0.950 30 H 0.006 0.994 31 H 0.070 0.930 32 H 0.041 0.959 33 H 0.076 0.924 34 H 0.088 0.912 35 H 0.086 0.914 36 H 0.090 0.910 37 H 0.089 0.911 38 H 0.143 0.857 39 H 0.141 0.859 40 H 0.141 0.859 41 H 0.071 0.929 42 H 0.073 0.927 43 H 0.116 0.884 44 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -10.105 12.638 10.406 19.239 hybrid contribution 0.949 -0.329 -0.442 1.098 sum -9.155 12.309 9.965 18.293 Atomic orbital electron populations 1.21788 0.96727 1.00157 1.01351 1.21955 0.94139 0.90464 1.00717 1.62109 1.25320 1.16622 1.22213 1.19749 0.81572 0.96817 0.95169 1.21195 0.93231 1.44438 0.95568 0.91897 1.24986 0.95669 0.95681 0.98301 1.69962 0.98417 1.48961 1.36558 0.86528 0.77184 0.78713 0.85167 1.20661 1.21379 1.19873 1.22032 0.99267 0.94383 0.91519 1.21512 1.03116 0.94800 0.94849 1.20669 1.02518 0.89641 0.99075 1.19763 0.92228 0.95938 0.95224 1.21030 0.97877 0.94177 1.03918 1.20906 0.97421 0.94216 0.97210 1.21156 0.92980 1.00035 1.09502 1.18997 0.85277 0.91760 0.96017 1.86062 1.31407 1.20259 1.85573 1.23015 1.03609 0.78854 1.01175 1.20306 0.99486 0.90680 1.06256 0.92192 0.93557 0.93892 0.89755 0.96608 0.94981 0.99423 0.93016 0.95909 0.92359 0.91200 0.91365 0.90957 0.91060 0.85736 0.85939 0.85875 0.92856 0.92684 0.88431 0.85268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.30 9.96 37.16 0.37 -1.93 16 2 C 0.06 1.10 5.51 -3.82 -0.02 1.08 16 3 N -0.54 -11.75 4.36 -236.07 -1.03 -12.78 16 4 C 0.19 5.06 4.55 -4.98 -0.02 5.03 16 5 C -0.51 -14.36 8.23 -34.44 -0.28 -14.65 16 6 H 0.06 1.77 7.31 -52.49 -0.38 1.39 16 7 C 0.05 1.57 5.46 -17.82 -0.10 1.47 16 8 N -0.90 -26.96 13.29 55.43 0.74 -26.23 16 9 Si 0.90 21.89 29.54 -169.99 -5.02 16.87 16 10 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 11 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 12 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 13 C 0.06 1.02 4.81 -3.82 -0.02 1.00 16 14 C -0.10 -1.76 5.23 -26.73 -0.14 -1.90 16 15 C -0.08 -1.08 5.34 -27.88 -0.15 -1.23 16 16 C -0.03 -0.43 5.13 -104.65 -0.54 -0.96 16 17 C -0.15 -1.99 9.70 -39.56 -0.38 -2.37 16 18 C -0.08 -0.94 10.04 -39.60 -0.40 -1.34 16 19 C -0.22 -2.56 9.04 -39.43 -0.36 -2.92 16 20 C 0.12 1.63 6.69 -39.22 -0.26 1.37 16 21 O -0.32 -3.89 10.50 -19.43 -0.20 -4.09 16 22 C 0.03 0.22 9.81 101.05 0.99 1.22 16 23 C -0.15 -2.03 9.64 -39.44 -0.38 -2.41 16 24 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 25 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.04 0.63 6.90 -51.93 -0.36 0.27 16 27 H 0.08 1.85 6.58 -51.93 -0.34 1.51 16 28 H 0.02 0.30 8.00 -51.93 -0.42 -0.11 16 29 H 0.03 0.90 6.71 -51.93 -0.35 0.55 16 30 H -0.01 -0.34 8.12 -51.93 -0.42 -0.76 16 31 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 32 H 0.02 0.42 8.00 -51.93 -0.42 0.01 16 33 H 0.06 0.93 6.56 -51.93 -0.34 0.59 16 34 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 35 H 0.07 1.30 6.95 -51.93 -0.36 0.94 16 36 H 0.07 0.90 8.08 -51.93 -0.42 0.48 16 37 H 0.07 0.85 8.08 -51.93 -0.42 0.43 16 38 H 0.12 1.51 8.06 -52.48 -0.42 1.09 16 39 H 0.12 1.16 8.06 -52.49 -0.42 0.74 16 40 H 0.12 1.14 6.30 -52.49 -0.33 0.81 16 41 H 0.05 0.35 7.67 -51.93 -0.40 -0.05 16 42 H 0.05 0.40 7.65 -51.93 -0.40 0.00 16 43 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 44 H 0.13 1.65 8.06 -52.48 -0.42 1.23 16 LS Contribution 356.10 15.07 5.37 5.37 Total: -1.00 -31.29 356.10 -9.28 -40.58 By element: Atomic # 1 Polarization: 6.26 SS G_CDS: -7.45 Total: -1.18 kcal Atomic # 6 Polarization: -16.85 SS G_CDS: -1.69 Total: -18.54 kcal Atomic # 7 Polarization: -38.71 SS G_CDS: -0.29 Total: -39.00 kcal Atomic # 8 Polarization: -3.89 SS G_CDS: -0.20 Total: -4.09 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -31.29 -9.28 -40.58 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000267055014.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.258 kcal (2) G-P(sol) polarization free energy of solvation -31.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.577 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds