Wall clock time and date at job start Mon Mar 30 2020 01:57:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46903 * 109.47203 * 2 1 4 4 C 1.46903 * 110.99556 * 199.75230 * 3 2 1 5 5 C 1.50696 * 109.47390 * 66.04547 * 4 3 2 6 6 H 1.08002 * 119.99996 * 359.97438 * 5 4 3 7 7 C 1.37882 * 120.00081 * 179.97438 * 5 4 3 8 8 N 1.31512 * 119.99700 * 359.97438 * 7 5 4 9 9 Si 1.86801 * 119.99892 * 180.02562 * 7 5 4 10 10 H 1.48493 * 109.47154 * 89.99729 * 9 7 5 11 11 H 1.48507 * 109.47006 * 210.00246 * 9 7 5 12 12 H 1.48501 * 109.47094 * 329.99605 * 9 7 5 13 13 C 1.46897 * 110.99989 * 75.79932 * 3 2 1 14 14 C 1.53004 * 109.46912 * 199.64491 * 13 3 2 15 15 C 1.52996 * 109.46990 * 174.87057 * 14 13 3 16 16 C 1.50701 * 109.47163 * 179.97438 * 15 14 13 17 17 C 1.38279 * 119.97643 * 270.03061 * 16 15 14 18 18 C 1.38246 * 120.11336 * 180.02562 * 17 16 15 19 19 C 1.38166 * 120.05724 * 359.67002 * 18 17 16 20 20 C 1.38717 * 119.93637 * 0.58109 * 19 18 17 21 21 O 1.35901 * 120.04830 * 179.72229 * 20 19 18 22 22 C 1.42898 * 117.00509 * 359.72067 * 21 20 19 23 23 C 1.38130 * 119.97070 * 90.00328 * 16 15 14 24 24 H 1.09006 * 109.46605 * 54.85111 * 1 2 3 25 25 H 1.08993 * 109.47636 * 174.84840 * 1 2 3 26 26 H 1.08994 * 109.47172 * 294.85761 * 1 2 3 27 27 H 1.09002 * 109.47233 * 239.99848 * 2 1 3 28 28 H 1.08999 * 109.47039 * 119.99821 * 2 1 3 29 29 H 1.09004 * 109.47092 * 186.04508 * 4 3 2 30 30 H 1.09000 * 109.47239 * 306.04480 * 4 3 2 31 31 H 0.97004 * 119.99748 * 179.97438 * 8 7 5 32 32 H 1.09000 * 109.47183 * 79.64880 * 13 3 2 33 33 H 1.09001 * 109.47076 * 319.64378 * 13 3 2 34 34 H 1.08999 * 109.46651 * 54.87539 * 14 13 3 35 35 H 1.08997 * 109.47271 * 294.87563 * 14 13 3 36 36 H 1.08999 * 109.47030 * 60.00714 * 15 14 13 37 37 H 1.08997 * 109.47526 * 300.00349 * 15 14 13 38 38 H 1.08007 * 119.94508 * 359.97438 * 17 16 15 39 39 H 1.08000 * 119.97010 * 179.97438 * 18 17 16 40 40 H 1.07995 * 120.03287 * 180.30192 * 19 18 17 41 41 H 1.09000 * 109.46988 * 300.00566 * 22 21 20 42 42 H 1.09000 * 109.47195 * 60.00318 * 22 21 20 43 43 H 1.08995 * 109.47405 * 180.02562 * 22 21 20 44 44 H 1.08003 * 120.02059 * 0.02562 * 23 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4121 1.4510 -0.4635 5 6 3.4785 1.0472 -1.9138 6 1 2.5765 0.7690 -2.4387 7 6 4.6907 1.0330 -2.5708 8 7 5.7888 1.3723 -1.9317 9 14 4.7728 0.5332 -4.3688 10 1 4.6044 1.7348 -5.2248 11 1 6.0897 -0.0936 -4.6487 12 1 3.6895 -0.4393 -4.6622 13 6 1.8780 1.9935 1.3295 14 6 1.9209 3.5174 1.2001 15 6 1.6459 4.1530 2.5643 16 6 1.6888 5.6540 2.4370 17 6 2.8815 6.3292 2.6205 18 6 2.9241 7.7061 2.5049 19 6 1.7756 8.4107 2.1989 20 6 0.5768 7.7362 2.0195 21 8 -0.5553 8.4274 1.7239 22 6 -0.4395 9.8479 1.6190 23 6 0.5367 6.3543 2.1365 24 1 -0.3633 0.5917 -0.8403 25 1 -0.3634 -1.0234 -0.0923 26 1 -0.3633 0.4320 0.9324 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 3.7841 2.4695 -0.3525 30 1 4.0253 0.7734 0.1307 31 1 6.6417 1.3619 -2.3937 32 1 2.6941 1.6602 1.9705 33 1 0.9261 1.6927 1.7671 34 1 1.1626 3.8430 0.4880 35 1 2.9057 3.8246 0.8480 36 1 2.4042 3.8274 3.2763 37 1 0.6611 3.8459 2.9164 38 1 3.7814 5.7799 2.8554 39 1 3.8568 8.2311 2.6491 40 1 1.8103 9.4859 2.1039 41 1 -0.0869 10.2546 2.5667 42 1 0.2701 10.0972 0.8301 43 1 -1.4134 10.2752 1.3804 44 1 -0.3946 5.8265 1.9932 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000267055014.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:57:39 Heat of formation + Delta-G solvation = -45.302354 kcal Electronic energy + Delta-G solvation = -21018.786650 eV Core-core repulsion = 17935.036946 eV Total energy + Delta-G solvation = -3083.749705 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.07647 -39.10517 -38.41651 -35.23581 -34.58300 -32.06710 -31.43460 -30.75046 -28.61004 -28.04247 -26.11599 -24.34854 -23.51755 -23.03903 -21.59717 -21.23623 -18.69164 -18.52900 -17.24924 -16.97359 -16.83763 -16.62293 -16.07844 -15.93504 -15.67129 -15.12602 -14.83717 -14.51334 -14.24072 -14.20379 -13.93312 -13.80110 -13.16846 -12.93362 -12.91210 -12.77718 -12.66531 -12.54129 -12.41650 -12.35652 -12.16920 -11.89290 -11.79457 -11.73883 -11.60349 -11.27738 -11.13624 -10.59081 -9.74213 -9.13905 -8.95887 -8.19550 -6.28977 0.37161 0.50285 1.40199 1.42014 1.52887 2.38291 2.40682 2.79018 3.12602 3.34577 3.82834 3.89218 4.05790 4.15423 4.26027 4.32418 4.37253 4.39942 4.45266 4.46840 4.56027 4.59355 4.65056 4.73101 4.73805 4.81688 4.83765 4.90634 5.06028 5.10658 5.13991 5.20857 5.28548 5.33930 5.37079 5.45955 5.49726 5.50710 5.67586 5.73193 5.84820 6.10297 6.42012 6.47934 6.71972 6.88133 7.40388 8.91607 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.016284 B = 0.003595 C = 0.003307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1719.117868 B = 7787.725248 C = 8465.261660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.052 3.948 3 N -0.547 5.547 4 C 0.209 3.791 5 C -0.523 4.523 6 H 0.061 0.939 7 C 0.001 3.999 8 N -0.935 5.935 9 Si 0.967 3.033 10 H -0.274 1.274 11 H -0.281 1.281 12 H -0.264 1.264 13 C 0.057 3.943 14 C -0.094 4.094 15 C -0.070 4.070 16 C -0.045 4.045 17 C -0.170 4.170 18 C -0.083 4.083 19 C -0.218 4.218 20 C 0.114 3.886 21 O -0.337 6.337 22 C 0.019 3.981 23 C -0.166 4.166 24 H 0.050 0.950 25 H 0.070 0.930 26 H 0.061 0.939 27 H 0.057 0.943 28 H 0.021 0.979 29 H 0.006 0.994 30 H -0.044 1.044 31 H 0.264 0.736 32 H 0.017 0.983 33 H 0.089 0.911 34 H 0.059 0.941 35 H 0.035 0.965 36 H 0.079 0.921 37 H 0.090 0.910 38 H 0.127 0.873 39 H 0.147 0.853 40 H 0.150 0.850 41 H 0.067 0.933 42 H 0.061 0.939 43 H 0.118 0.882 44 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.182 13.093 10.802 20.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.076 4.076 3 N -0.271 5.271 4 C 0.083 3.917 5 C -0.561 4.561 6 H 0.079 0.921 7 C -0.197 4.197 8 N -0.575 5.575 9 Si 0.792 3.208 10 H -0.200 1.200 11 H -0.207 1.207 12 H -0.188 1.188 13 C -0.071 4.071 14 C -0.132 4.132 15 C -0.108 4.108 16 C -0.045 4.045 17 C -0.188 4.188 18 C -0.101 4.101 19 C -0.236 4.236 20 C 0.069 3.931 21 O -0.252 6.252 22 C -0.076 4.076 23 C -0.185 4.185 24 H 0.070 0.930 25 H 0.089 0.911 26 H 0.080 0.920 27 H 0.075 0.925 28 H 0.040 0.960 29 H 0.024 0.976 30 H -0.026 1.026 31 H 0.073 0.927 32 H 0.035 0.965 33 H 0.107 0.893 34 H 0.078 0.922 35 H 0.054 0.946 36 H 0.098 0.902 37 H 0.109 0.891 38 H 0.145 0.855 39 H 0.164 0.836 40 H 0.167 0.833 41 H 0.085 0.915 42 H 0.079 0.921 43 H 0.137 0.863 44 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -11.493 13.306 10.417 20.436 hybrid contribution 1.348 -0.464 -0.399 1.480 sum -10.146 12.842 10.017 19.189 Atomic orbital electron populations 1.21685 0.93271 1.01851 1.01986 1.22020 0.96857 0.89029 0.99663 1.62089 1.22097 1.18233 1.24687 1.19364 0.83809 0.94206 0.94308 1.21493 0.93411 1.44597 0.96600 0.92068 1.25909 0.95178 0.95444 1.03161 1.70091 0.99047 1.49797 1.38585 0.85411 0.77581 0.78625 0.79185 1.19964 1.20671 1.18798 1.22146 1.00507 0.94849 0.89588 1.21363 1.00849 0.94176 0.96792 1.20557 1.03810 0.89538 0.96862 1.19812 0.92635 0.95969 0.96106 1.21238 0.97888 0.95133 1.04557 1.21233 0.98605 0.93863 0.96358 1.21473 0.92331 1.01414 1.08420 1.19179 0.86125 0.91872 0.95955 1.86039 1.31258 1.22434 1.85422 1.23329 1.05288 0.76728 1.02211 1.20455 0.99612 0.91453 1.06937 0.93042 0.91078 0.91987 0.92491 0.96043 0.97604 1.02589 0.92749 0.96508 0.89279 0.92233 0.94614 0.90194 0.89115 0.85531 0.83570 0.83287 0.91476 0.92072 0.86343 0.85058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.93 9.96 71.98 0.72 -3.21 16 2 C 0.05 2.07 5.51 86.30 0.48 2.54 16 3 N -0.55 -24.28 4.36 -900.78 -3.92 -28.20 16 4 C 0.21 11.53 4.55 85.56 0.39 11.92 16 5 C -0.52 -30.48 8.23 25.60 0.21 -30.27 16 6 H 0.06 3.51 7.31 -2.91 -0.02 3.49 16 7 C 0.00 0.05 5.46 84.66 0.46 0.51 16 8 N -0.93 -57.42 13.29 21.45 0.28 -57.13 16 9 Si 0.97 45.22 29.54 68.60 2.03 47.25 16 10 H -0.27 -12.48 7.11 99.48 0.71 -11.77 16 11 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 12 H -0.26 -11.80 7.11 99.48 0.71 -11.10 16 13 C 0.06 2.06 4.81 86.31 0.41 2.47 16 14 C -0.09 -3.21 5.23 30.59 0.16 -3.05 16 15 C -0.07 -1.84 5.34 29.85 0.16 -1.68 16 16 C -0.05 -1.23 5.13 -19.88 -0.10 -1.33 16 17 C -0.17 -4.44 9.70 22.28 0.22 -4.22 16 18 C -0.08 -1.87 10.04 22.25 0.22 -1.65 16 19 C -0.22 -4.78 9.04 22.37 0.20 -4.58 16 20 C 0.11 2.89 6.69 22.50 0.15 3.04 16 21 O -0.34 -7.82 10.50 -92.44 -0.97 -8.80 16 22 C 0.02 0.25 9.81 113.37 1.11 1.37 16 23 C -0.17 -4.49 9.64 22.36 0.22 -4.27 16 24 H 0.05 1.64 8.14 -2.38 -0.02 1.62 16 25 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 26 H 0.06 1.63 6.90 -2.39 -0.02 1.62 16 27 H 0.06 2.54 6.58 -2.39 -0.02 2.52 16 28 H 0.02 0.81 8.00 -2.39 -0.02 0.79 16 29 H 0.01 0.35 6.71 -2.39 -0.02 0.33 16 30 H -0.04 -2.61 8.12 -2.39 -0.02 -2.63 16 31 H 0.26 15.20 8.31 -92.71 -0.77 14.43 16 32 H 0.02 0.63 8.00 -2.39 -0.02 0.61 16 33 H 0.09 2.67 6.56 -2.39 -0.02 2.65 16 34 H 0.06 2.13 8.14 -2.39 -0.02 2.12 16 35 H 0.04 1.43 6.95 -2.39 -0.02 1.42 16 36 H 0.08 1.96 8.08 -2.39 -0.02 1.94 16 37 H 0.09 2.02 8.08 -2.39 -0.02 2.00 16 38 H 0.13 3.13 8.06 -2.91 -0.02 3.11 16 39 H 0.15 2.51 8.06 -2.91 -0.02 2.48 16 40 H 0.15 2.38 6.30 -2.91 -0.02 2.36 16 41 H 0.07 0.72 7.67 -2.39 -0.02 0.70 16 42 H 0.06 0.75 7.65 -2.39 -0.02 0.73 16 43 H 0.12 1.07 8.14 -2.39 -0.02 1.05 16 44 H 0.13 3.34 8.06 -2.91 -0.02 3.32 16 Total: -1.00 -69.14 356.10 3.37 -65.77 By element: Atomic # 1 Polarization: 12.57 SS G_CDS: 0.95 Total: 13.52 kcal Atomic # 6 Polarization: -37.42 SS G_CDS: 5.01 Total: -32.41 kcal Atomic # 7 Polarization: -81.69 SS G_CDS: -3.64 Total: -85.33 kcal Atomic # 8 Polarization: -7.82 SS G_CDS: -0.97 Total: -8.80 kcal Atomic # 14 Polarization: 45.22 SS G_CDS: 2.03 Total: 47.25 kcal Total: -69.14 3.37 -65.77 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000267055014.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.466 kcal (2) G-P(sol) polarization free energy of solvation -69.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.768 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds