Wall clock time and date at job start Mon Mar 30 2020 02:10:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42902 * 109.47296 * 2 1 4 4 C 1.35898 * 117.00254 * 179.97438 * 3 2 1 5 5 C 1.38753 * 120.05357 * 359.97438 * 4 3 2 6 6 C 1.38123 * 119.94329 * 180.02562 * 5 4 3 7 7 C 1.38288 * 120.05386 * 0.02562 * 6 5 4 8 8 C 1.38244 * 120.11305 * 359.97438 * 7 6 5 9 9 C 1.38165 * 120.05319 * 0.02562 * 8 7 6 10 10 C 1.50705 * 120.02348 * 180.02562 * 9 8 7 11 11 H 1.08999 * 109.46373 * 145.00128 * 10 9 8 12 12 C 1.53001 * 109.47148 * 264.99983 * 10 9 8 13 13 N 1.46901 * 109.46929 * 25.00287 * 10 9 8 14 14 C 1.46901 * 110.99620 * 155.00132 * 13 10 9 15 15 C 1.53001 * 109.46925 * 180.02562 * 14 13 10 16 16 C 1.53000 * 109.46974 * 179.97438 * 15 14 13 17 17 C 1.50705 * 109.47077 * 179.97438 * 16 15 14 18 18 H 1.07999 * 119.99689 * 0.02562 * 17 16 15 19 19 C 1.37879 * 119.99893 * 179.97438 * 17 16 15 20 20 N 1.31507 * 120.00110 * 0.02562 * 19 17 16 21 21 Si 1.86804 * 119.99676 * 180.02562 * 19 17 16 22 22 H 1.48492 * 109.47121 * 0.02562 * 21 19 17 23 23 H 1.48496 * 109.46799 * 120.00365 * 21 19 17 24 24 H 1.48506 * 109.46835 * 240.00290 * 21 19 17 25 25 H 1.08992 * 109.47012 * 60.00191 * 1 2 3 26 26 H 1.09000 * 109.47291 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47266 * 300.00165 * 1 2 3 28 28 H 1.09001 * 109.47266 * 239.99835 * 2 1 3 29 29 H 1.09005 * 109.46832 * 120.00002 * 2 1 3 30 30 H 1.08001 * 120.02917 * 359.97438 * 5 4 3 31 31 H 1.08001 * 119.97030 * 179.97438 * 6 5 4 32 32 H 1.08004 * 119.93990 * 180.02562 * 7 6 5 33 33 H 1.08002 * 119.97061 * 180.28475 * 8 7 6 34 34 H 1.09000 * 109.46923 * 179.97438 * 12 10 9 35 35 H 1.08999 * 109.47124 * 300.00085 * 12 10 9 36 36 H 1.08998 * 109.47253 * 60.00211 * 12 10 9 37 37 H 1.00891 * 111.00299 * 31.04288 * 13 10 9 38 38 H 1.09004 * 109.46711 * 299.99596 * 14 13 10 39 39 H 1.08997 * 109.47571 * 59.99415 * 14 13 10 40 40 H 1.09004 * 109.47092 * 299.99357 * 15 14 13 41 41 H 1.08997 * 109.47479 * 59.99353 * 15 14 13 42 42 H 1.09001 * 109.47436 * 299.99661 * 16 15 14 43 43 H 1.09009 * 109.47264 * 60.00047 * 16 15 14 44 44 H 0.97005 * 120.00392 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3536 1.5254 0.0005 5 6 4.1999 0.4258 0.0016 6 6 5.5689 0.6094 0.0027 7 6 6.0961 1.8878 0.0032 8 6 5.2551 2.9850 0.0022 9 6 3.8850 2.8066 0.0011 10 6 2.9688 4.0031 -0.0006 11 1 2.0801 3.7792 -0.5907 12 6 2.5576 4.3327 1.4358 13 7 3.6682 5.1545 -0.5863 14 6 2.7140 6.1201 -1.1478 15 6 3.4781 7.3021 -1.7476 16 6 2.4843 8.3075 -2.3330 17 6 3.2369 9.4721 -2.9233 18 1 4.3160 9.4929 -2.8851 19 6 2.5477 10.5106 -3.5130 20 7 1.2337 10.4850 -3.5599 21 14 3.4806 11.9538 -4.2454 22 1 4.9394 11.7428 -4.0654 23 1 3.1711 12.0594 -5.6939 24 1 3.0727 13.2062 -3.5594 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5139 0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 3.7885 -0.5728 0.0024 31 1 6.2280 -0.2461 0.0039 32 1 7.1669 2.0293 0.0037 33 1 5.6694 3.9824 -0.0020 34 1 1.8953 5.1984 1.4345 35 1 2.0386 3.4783 1.8703 36 1 3.4463 4.5565 2.0259 37 1 4.3340 4.8569 -1.2834 38 1 2.1238 5.6367 -1.9263 39 1 2.0520 6.4774 -0.3590 40 1 4.0686 7.7856 -0.9694 41 1 4.1398 6.9445 -2.5364 42 1 1.8941 7.8238 -3.1113 43 1 1.8223 8.6653 -1.5444 44 1 0.7488 11.2154 -3.9751 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000268842333.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:34 Heat of formation + Delta-G solvation = -35.068921 kcal Electronic energy + Delta-G solvation = -21018.116581 eV Core-core repulsion = 17934.810632 eV Total energy + Delta-G solvation = -3083.305950 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.50678 -37.98886 -36.58017 -33.98058 -32.43344 -31.88592 -30.31051 -29.73025 -28.63766 -25.97431 -24.37476 -23.48279 -22.15394 -21.78396 -20.30107 -19.94551 -18.29351 -16.42287 -16.34155 -16.19567 -16.01982 -15.11464 -14.66979 -14.48472 -14.17536 -14.04218 -13.77683 -13.46086 -13.15671 -12.87424 -12.55967 -12.21812 -12.14141 -12.06071 -11.82368 -11.75054 -11.55040 -11.43893 -11.06154 -10.98880 -10.81473 -10.57834 -10.46930 -10.39214 -9.63041 -9.28946 -9.01471 -8.92979 -8.30034 -8.27279 -8.09365 -5.94954 -3.96704 1.20528 1.32550 3.00013 3.34513 3.41671 3.46454 3.64293 4.35923 4.51717 4.55801 4.61301 4.70749 4.80924 4.92326 4.95782 5.07101 5.27184 5.33697 5.40877 5.44024 5.48684 5.56564 5.67898 5.75628 5.84636 5.86731 5.97261 6.02940 6.07723 6.21142 6.30743 6.37345 6.43562 6.47296 6.69116 6.79733 6.87777 7.20501 7.25858 7.44674 7.71149 7.74998 7.90342 8.06134 8.49578 9.10872 9.67041 11.16576 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.023296 B = 0.003034 C = 0.002805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1201.654344 B = 9225.368199 C = 9981.059539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.055 3.945 3 O -0.311 6.311 4 C 0.133 3.867 5 C -0.212 4.212 6 C -0.087 4.087 7 C -0.158 4.158 8 C -0.069 4.069 9 C -0.114 4.114 10 C 0.130 3.870 11 H 0.054 0.946 12 C -0.129 4.129 13 N -0.686 5.686 14 C 0.059 3.941 15 C -0.106 4.106 16 C 0.021 3.979 17 C -0.517 4.517 18 H 0.055 0.945 19 C 0.055 3.945 20 N -0.897 5.897 21 Si 0.891 3.109 22 H -0.273 1.273 23 H -0.285 1.285 24 H -0.284 1.284 25 H 0.067 0.933 26 H 0.076 0.924 27 H 0.067 0.933 28 H 0.060 0.940 29 H 0.060 0.940 30 H 0.124 0.876 31 H 0.121 0.879 32 H 0.123 0.877 33 H 0.142 0.858 34 H 0.058 0.942 35 H 0.052 0.948 36 H 0.059 0.941 37 H 0.338 0.662 38 H 0.024 0.976 39 H 0.068 0.932 40 H 0.056 0.944 41 H 0.044 0.956 42 H 0.013 0.987 43 H 0.016 0.984 44 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.656 -24.396 9.202 26.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.020 4.020 3 O -0.225 6.225 4 C 0.087 3.913 5 C -0.231 4.231 6 C -0.105 4.105 7 C -0.176 4.176 8 C -0.087 4.087 9 C -0.115 4.115 10 C 0.021 3.979 11 H 0.072 0.928 12 C -0.187 4.187 13 N -0.318 5.318 14 C -0.069 4.069 15 C -0.144 4.144 16 C -0.016 4.016 17 C -0.555 4.555 18 H 0.074 0.926 19 C -0.146 4.146 20 N -0.536 5.536 21 Si 0.719 3.281 22 H -0.197 1.197 23 H -0.211 1.211 24 H -0.210 1.210 25 H 0.086 0.914 26 H 0.095 0.905 27 H 0.086 0.914 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.142 0.858 31 H 0.139 0.861 32 H 0.141 0.859 33 H 0.159 0.841 34 H 0.077 0.923 35 H 0.071 0.929 36 H 0.078 0.922 37 H 0.156 0.844 38 H 0.042 0.958 39 H 0.086 0.914 40 H 0.075 0.925 41 H 0.063 0.937 42 H 0.032 0.968 43 H 0.034 0.966 44 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 3.386 -23.822 9.742 25.959 hybrid contribution 0.206 0.021 -1.280 1.297 sum 3.593 -23.801 8.462 25.514 Atomic orbital electron populations 1.21775 0.92686 1.02738 1.03794 1.22764 0.95962 0.82170 1.01137 1.86113 1.18945 1.28935 1.88474 1.18803 0.82322 0.93519 0.96672 1.21158 0.94455 0.97676 1.09783 1.20912 0.94213 0.97345 0.98042 1.21092 0.99945 0.92409 1.04156 1.21041 0.91636 0.99889 0.96161 1.19441 0.94482 0.91946 1.05645 1.20221 0.93977 0.86793 0.96928 0.92775 1.21701 1.01291 1.00887 0.94824 1.60747 1.18402 1.13925 1.38754 1.22169 0.94301 0.93216 0.97227 1.21616 0.99116 0.94853 0.98836 1.19073 0.94057 0.92818 0.95667 1.21307 0.93185 1.04271 1.36750 0.92625 1.25035 0.94843 0.98406 0.96307 1.69978 1.06122 1.32493 1.45047 0.86548 0.80154 0.82586 0.78792 1.19724 1.21094 1.21035 0.91373 0.90480 0.91411 0.92217 0.92204 0.85785 0.86104 0.85897 0.84053 0.92267 0.92898 0.92225 0.84382 0.95782 0.91391 0.92543 0.93729 0.96835 0.96575 0.93135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.05 10.28 37.16 0.38 -0.66 16 2 C 0.05 0.45 5.46 37.16 0.20 0.65 16 3 O -0.31 -3.69 9.27 -19.42 -0.18 -3.87 16 4 C 0.13 1.62 6.66 -39.22 -0.26 1.36 16 5 C -0.21 -2.17 9.04 -39.43 -0.36 -2.53 16 6 C -0.09 -0.83 10.04 -39.61 -0.40 -1.23 16 7 C -0.16 -1.62 10.04 -39.56 -0.40 -2.01 16 8 C -0.07 -0.82 8.86 -39.61 -0.35 -1.17 16 9 C -0.11 -1.49 4.94 -104.47 -0.52 -2.00 16 10 C 0.13 1.86 2.55 -68.86 -0.18 1.68 16 11 H 0.05 0.84 7.35 -51.93 -0.38 0.46 16 12 C -0.13 -1.74 9.40 37.16 0.35 -1.39 16 13 N -0.69 -10.63 5.57 -107.95 -0.60 -11.23 16 14 C 0.06 1.08 5.48 -3.82 -0.02 1.06 16 15 C -0.11 -2.27 5.41 -26.73 -0.14 -2.42 16 16 C 0.02 0.57 4.97 -27.88 -0.14 0.43 16 17 C -0.52 -15.03 9.11 -34.44 -0.31 -15.35 16 18 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 19 C 0.05 1.61 5.46 -17.82 -0.10 1.51 16 20 N -0.90 -27.53 13.29 55.43 0.74 -26.79 16 21 Si 0.89 22.09 29.54 -169.99 -5.02 17.06 16 22 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 23 H -0.28 -6.97 7.11 56.52 0.40 -6.56 16 24 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 25 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 27 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.06 0.43 7.67 -51.93 -0.40 0.04 16 29 H 0.06 0.41 7.66 -51.93 -0.40 0.02 16 30 H 0.12 0.99 6.30 -52.49 -0.33 0.66 16 31 H 0.12 0.86 8.06 -52.49 -0.42 0.43 16 32 H 0.12 1.01 8.06 -52.48 -0.42 0.58 16 33 H 0.14 1.65 6.96 -52.49 -0.37 1.28 16 34 H 0.06 0.83 7.45 -51.93 -0.39 0.44 16 35 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 37 H 0.34 4.99 7.26 -39.30 -0.29 4.70 16 38 H 0.02 0.45 8.06 -51.93 -0.42 0.03 16 39 H 0.07 1.26 7.43 -51.93 -0.39 0.88 16 40 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 41 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 42 H 0.01 0.38 8.14 -51.93 -0.42 -0.05 16 43 H 0.02 0.45 8.14 -51.92 -0.42 0.03 16 44 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 LS Contribution 358.28 15.07 5.40 5.40 Total: -1.00 -31.58 358.28 -9.45 -41.02 By element: Atomic # 1 Polarization: 8.03 SS G_CDS: -7.54 Total: 0.49 kcal Atomic # 6 Polarization: -19.84 SS G_CDS: -2.24 Total: -22.07 kcal Atomic # 7 Polarization: -38.16 SS G_CDS: 0.14 Total: -38.03 kcal Atomic # 8 Polarization: -3.69 SS G_CDS: -0.18 Total: -3.87 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -31.58 -9.45 -41.02 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000268842333.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.952 kcal (2) G-P(sol) polarization free energy of solvation -31.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.021 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds