Wall clock time and date at job start Mon Mar 30 2020 02:10:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42902 * 109.47296 * 2 1 4 4 C 1.35898 * 117.00254 * 179.97438 * 3 2 1 5 5 C 1.38753 * 120.05357 * 359.97438 * 4 3 2 6 6 C 1.38123 * 119.94329 * 180.02562 * 5 4 3 7 7 C 1.38288 * 120.05386 * 0.02562 * 6 5 4 8 8 C 1.38244 * 120.11305 * 359.97438 * 7 6 5 9 9 C 1.38165 * 120.05319 * 0.02562 * 8 7 6 10 10 C 1.50705 * 120.02348 * 180.02562 * 9 8 7 11 11 H 1.08999 * 109.46373 * 145.00128 * 10 9 8 12 12 C 1.53001 * 109.47148 * 264.99983 * 10 9 8 13 13 N 1.46901 * 109.46929 * 25.00287 * 10 9 8 14 14 C 1.46901 * 110.99620 * 155.00132 * 13 10 9 15 15 C 1.53001 * 109.46925 * 180.02562 * 14 13 10 16 16 C 1.53000 * 109.46974 * 179.97438 * 15 14 13 17 17 C 1.50705 * 109.47077 * 179.97438 * 16 15 14 18 18 H 1.07999 * 119.99689 * 0.02562 * 17 16 15 19 19 C 1.37879 * 119.99893 * 179.97438 * 17 16 15 20 20 N 1.31507 * 120.00110 * 0.02562 * 19 17 16 21 21 Si 1.86804 * 119.99676 * 180.02562 * 19 17 16 22 22 H 1.48492 * 109.47121 * 0.02562 * 21 19 17 23 23 H 1.48496 * 109.46799 * 120.00365 * 21 19 17 24 24 H 1.48506 * 109.46835 * 240.00290 * 21 19 17 25 25 H 1.08992 * 109.47012 * 60.00191 * 1 2 3 26 26 H 1.09000 * 109.47291 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47266 * 300.00165 * 1 2 3 28 28 H 1.09001 * 109.47266 * 239.99835 * 2 1 3 29 29 H 1.09005 * 109.46832 * 120.00002 * 2 1 3 30 30 H 1.08001 * 120.02917 * 359.97438 * 5 4 3 31 31 H 1.08001 * 119.97030 * 179.97438 * 6 5 4 32 32 H 1.08004 * 119.93990 * 180.02562 * 7 6 5 33 33 H 1.08002 * 119.97061 * 180.28475 * 8 7 6 34 34 H 1.09000 * 109.46923 * 179.97438 * 12 10 9 35 35 H 1.08999 * 109.47124 * 300.00085 * 12 10 9 36 36 H 1.08998 * 109.47253 * 60.00211 * 12 10 9 37 37 H 1.00891 * 111.00299 * 31.04288 * 13 10 9 38 38 H 1.09004 * 109.46711 * 299.99596 * 14 13 10 39 39 H 1.08997 * 109.47571 * 59.99415 * 14 13 10 40 40 H 1.09004 * 109.47092 * 299.99357 * 15 14 13 41 41 H 1.08997 * 109.47479 * 59.99353 * 15 14 13 42 42 H 1.09001 * 109.47436 * 299.99661 * 16 15 14 43 43 H 1.09009 * 109.47264 * 60.00047 * 16 15 14 44 44 H 0.97005 * 120.00392 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3536 1.5254 0.0005 5 6 4.1999 0.4258 0.0016 6 6 5.5689 0.6094 0.0027 7 6 6.0961 1.8878 0.0032 8 6 5.2551 2.9850 0.0022 9 6 3.8850 2.8066 0.0011 10 6 2.9688 4.0031 -0.0006 11 1 2.0801 3.7792 -0.5907 12 6 2.5576 4.3327 1.4358 13 7 3.6682 5.1545 -0.5863 14 6 2.7140 6.1201 -1.1478 15 6 3.4781 7.3021 -1.7476 16 6 2.4843 8.3075 -2.3330 17 6 3.2369 9.4721 -2.9233 18 1 4.3160 9.4929 -2.8851 19 6 2.5477 10.5106 -3.5130 20 7 1.2337 10.4850 -3.5599 21 14 3.4806 11.9538 -4.2454 22 1 4.9394 11.7428 -4.0654 23 1 3.1711 12.0594 -5.6939 24 1 3.0727 13.2062 -3.5594 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5139 0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 3.7885 -0.5728 0.0024 31 1 6.2280 -0.2461 0.0039 32 1 7.1669 2.0293 0.0037 33 1 5.6694 3.9824 -0.0020 34 1 1.8953 5.1984 1.4345 35 1 2.0386 3.4783 1.8703 36 1 3.4463 4.5565 2.0259 37 1 4.3340 4.8569 -1.2834 38 1 2.1238 5.6367 -1.9263 39 1 2.0520 6.4774 -0.3590 40 1 4.0686 7.7856 -0.9694 41 1 4.1398 6.9445 -2.5364 42 1 1.8941 7.8238 -3.1113 43 1 1.8223 8.6653 -1.5444 44 1 0.7488 11.2154 -3.9751 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000268842333.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:33 Heat of formation + Delta-G solvation = -52.980721 kcal Electronic energy + Delta-G solvation = -21018.893295 eV Core-core repulsion = 17934.810632 eV Total energy + Delta-G solvation = -3084.082664 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.33957 -38.91979 -37.75450 -35.81664 -34.03862 -32.76521 -31.53546 -30.81237 -29.67480 -27.82905 -25.10631 -24.92543 -23.48886 -22.63496 -21.91287 -21.15062 -19.12281 -18.47108 -17.28005 -17.12779 -17.02928 -16.53190 -16.28875 -15.55487 -15.33665 -15.23555 -14.95404 -14.40176 -14.25162 -14.16804 -13.68608 -13.46835 -13.39624 -13.33409 -12.98713 -12.82121 -12.78996 -12.57676 -12.54603 -12.44208 -12.20316 -12.03788 -11.64275 -11.59184 -11.48371 -11.34053 -11.06282 -10.55904 -9.80094 -9.44687 -9.07838 -8.19886 -6.31063 0.37661 0.50751 1.40201 1.40748 1.54551 2.28705 2.41360 2.81978 3.13122 3.14489 3.68500 3.93939 4.04581 4.08918 4.20296 4.22349 4.28475 4.29413 4.35661 4.44400 4.54387 4.56545 4.68919 4.70481 4.79856 4.92058 4.92873 4.93883 4.98921 5.08257 5.13054 5.20384 5.23035 5.32891 5.38957 5.48218 5.53791 5.61738 5.74927 5.85838 5.90759 6.08543 6.27156 6.41875 6.51787 6.85983 7.38180 8.92436 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.023296 B = 0.003034 C = 0.002805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1201.654344 B = 9225.368199 C = 9981.059539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.047 3.953 3 O -0.334 6.334 4 C 0.119 3.881 5 C -0.213 4.213 6 C -0.083 4.083 7 C -0.161 4.161 8 C -0.079 4.079 9 C -0.137 4.137 10 C 0.135 3.865 11 H 0.037 0.963 12 C -0.123 4.123 13 N -0.679 5.679 14 C 0.073 3.927 15 C -0.090 4.090 16 C 0.025 3.975 17 C -0.542 4.542 18 H 0.061 0.939 19 C -0.003 4.003 20 N -0.935 5.935 21 Si 0.967 3.033 22 H -0.261 1.261 23 H -0.277 1.277 24 H -0.277 1.277 25 H 0.055 0.945 26 H 0.102 0.898 27 H 0.060 0.940 28 H 0.070 0.930 29 H 0.075 0.925 30 H 0.147 0.853 31 H 0.152 0.848 32 H 0.144 0.856 33 H 0.138 0.862 34 H 0.048 0.952 35 H 0.060 0.940 36 H 0.060 0.940 37 H 0.343 0.657 38 H 0.017 0.983 39 H 0.062 0.938 40 H 0.056 0.944 41 H 0.050 0.950 42 H -0.011 1.011 43 H -0.009 1.009 44 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.469 -25.826 9.318 27.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.027 4.027 3 O -0.248 6.248 4 C 0.073 3.927 5 C -0.231 4.231 6 C -0.101 4.101 7 C -0.179 4.179 8 C -0.098 4.098 9 C -0.138 4.138 10 C 0.026 3.974 11 H 0.055 0.945 12 C -0.181 4.181 13 N -0.311 5.311 14 C -0.056 4.056 15 C -0.128 4.128 16 C -0.013 4.013 17 C -0.580 4.580 18 H 0.079 0.921 19 C -0.200 4.200 20 N -0.575 5.575 21 Si 0.792 3.208 22 H -0.185 1.185 23 H -0.203 1.203 24 H -0.203 1.203 25 H 0.074 0.926 26 H 0.121 0.879 27 H 0.080 0.920 28 H 0.088 0.912 29 H 0.093 0.907 30 H 0.165 0.835 31 H 0.169 0.831 32 H 0.162 0.838 33 H 0.156 0.844 34 H 0.067 0.933 35 H 0.079 0.921 36 H 0.079 0.921 37 H 0.162 0.838 38 H 0.035 0.965 39 H 0.080 0.920 40 H 0.075 0.925 41 H 0.069 0.931 42 H 0.007 0.993 43 H 0.009 0.991 44 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 5.208 -25.272 9.867 27.625 hybrid contribution -0.387 0.371 -1.298 1.405 sum 4.821 -24.901 8.569 26.772 Atomic orbital electron populations 1.21810 0.92034 1.04107 1.02865 1.23033 0.96540 0.80885 1.02291 1.86092 1.19014 1.31180 1.88554 1.18975 0.82837 0.93802 0.97098 1.21465 0.94684 0.98135 1.08849 1.21316 0.94390 0.98095 0.96300 1.21378 1.00896 0.92229 1.03362 1.21095 0.91419 1.00485 0.96761 1.19383 0.94771 0.91762 1.07933 1.20129 0.93678 0.86968 0.96643 0.94546 1.21643 1.01129 1.00756 0.94584 1.60681 1.17724 1.14292 1.38433 1.21871 0.94191 0.92832 0.96730 1.21359 0.97959 0.94687 0.98797 1.18975 0.94439 0.93600 0.94253 1.21728 0.93674 1.05316 1.37232 0.92126 1.26022 0.95802 1.01625 0.96599 1.70110 1.07925 1.33699 1.45788 0.85363 0.79088 0.78434 0.77948 1.18500 1.20314 1.20294 0.92574 0.87938 0.92050 0.91210 0.90718 0.83498 0.83058 0.83771 0.84444 0.93269 0.92109 0.92101 0.83754 0.96484 0.91965 0.92539 0.93094 0.99282 0.99059 0.92772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.93 10.28 71.98 0.74 -1.19 16 2 C 0.05 0.70 5.46 71.98 0.39 1.10 16 3 O -0.33 -7.82 9.27 -92.40 -0.86 -8.68 16 4 C 0.12 2.80 6.66 22.50 0.15 2.95 16 5 C -0.21 -3.86 9.04 22.37 0.20 -3.66 16 6 C -0.08 -1.34 10.04 22.25 0.22 -1.12 16 7 C -0.16 -2.92 10.04 22.28 0.22 -2.70 16 8 C -0.08 -1.81 8.86 22.25 0.20 -1.61 16 9 C -0.14 -3.54 4.94 -19.77 -0.10 -3.64 16 10 C 0.14 3.93 2.55 44.17 0.11 4.04 16 11 H 0.04 1.18 7.35 -2.39 -0.02 1.17 16 12 C -0.12 -3.38 9.40 71.98 0.68 -2.70 16 13 N -0.68 -21.25 5.57 -495.43 -2.76 -24.01 16 14 C 0.07 2.73 5.48 86.30 0.47 3.20 16 15 C -0.09 -3.92 5.41 30.59 0.17 -3.75 16 16 C 0.02 1.38 4.97 29.85 0.15 1.52 16 17 C -0.54 -31.90 9.11 25.60 0.23 -31.66 16 18 H 0.06 3.43 7.74 -2.91 -0.02 3.40 16 19 C 0.00 -0.18 5.46 84.66 0.46 0.28 16 20 N -0.93 -58.38 13.29 21.45 0.28 -58.10 16 21 Si 0.97 45.29 29.54 68.60 2.03 47.31 16 22 H -0.26 -11.64 7.11 99.48 0.71 -10.93 16 23 H -0.28 -12.60 7.11 99.48 0.71 -11.90 16 24 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 25 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 26 H 0.10 0.76 8.14 -2.39 -0.02 0.74 16 27 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 28 H 0.07 0.89 7.67 -2.39 -0.02 0.87 16 29 H 0.07 0.88 7.66 -2.38 -0.02 0.86 16 30 H 0.15 1.89 6.30 -2.91 -0.02 1.87 16 31 H 0.15 1.49 8.06 -2.91 -0.02 1.47 16 32 H 0.14 1.94 8.06 -2.91 -0.02 1.92 16 33 H 0.14 3.13 6.96 -2.91 -0.02 3.11 16 34 H 0.05 1.41 7.45 -2.39 -0.02 1.39 16 35 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 36 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 37 H 0.34 10.13 7.26 -89.70 -0.65 9.48 16 38 H 0.02 0.66 8.06 -2.38 -0.02 0.64 16 39 H 0.06 2.40 7.43 -2.39 -0.02 2.38 16 40 H 0.06 2.45 8.14 -2.38 -0.02 2.43 16 41 H 0.05 2.13 8.14 -2.39 -0.02 2.11 16 42 H -0.01 -0.66 8.14 -2.39 -0.02 -0.68 16 43 H -0.01 -0.53 8.14 -2.38 -0.02 -0.55 16 44 H 0.26 15.35 8.31 -92.70 -0.77 14.58 16 Total: -1.00 -68.49 358.28 3.31 -65.18 By element: Atomic # 1 Polarization: 16.92 SS G_CDS: 0.31 Total: 17.23 kcal Atomic # 6 Polarization: -43.25 SS G_CDS: 4.30 Total: -38.94 kcal Atomic # 7 Polarization: -79.63 SS G_CDS: -2.47 Total: -82.11 kcal Atomic # 8 Polarization: -7.82 SS G_CDS: -0.86 Total: -8.68 kcal Atomic # 14 Polarization: 45.29 SS G_CDS: 2.03 Total: 47.31 kcal Total: -68.49 3.31 -65.18 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000268842333.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.200 kcal (2) G-P(sol) polarization free energy of solvation -68.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.181 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds