Wall clock time and date at job start Mon Mar 30 2020 02:10:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.42895 * 109.47062 * 2 1 4 4 C 1.35904 * 116.99710 * 179.97438 * 3 2 1 5 5 C 1.38746 * 120.05820 * 0.02562 * 4 3 2 6 6 C 1.38120 * 119.94427 * 179.97438 * 5 4 3 7 7 C 1.38280 * 120.05984 * 359.97438 * 6 5 4 8 8 C 1.38250 * 120.10860 * 359.74819 * 7 6 5 9 9 C 1.38163 * 120.05274 * 0.50277 * 8 7 6 10 10 C 1.50708 * 120.02641 * 179.77236 * 9 8 7 11 11 H 1.08999 * 109.46904 * 219.72719 * 10 9 8 12 12 C 1.52999 * 109.47150 * 99.72806 * 10 9 8 13 13 N 1.46903 * 109.46830 * 339.72504 * 10 9 8 14 14 C 1.46898 * 110.99673 * 204.99929 * 13 10 9 15 15 C 1.53006 * 109.47006 * 180.02562 * 14 13 10 16 16 C 1.52997 * 109.47127 * 180.02562 * 15 14 13 17 17 C 1.50696 * 109.47055 * 179.97438 * 16 15 14 18 18 H 1.08000 * 120.00290 * 0.02562 * 17 16 15 19 19 C 1.37887 * 120.00079 * 179.97438 * 17 16 15 20 20 N 1.31514 * 119.99907 * 180.02562 * 19 17 16 21 21 Si 1.86800 * 119.99654 * 0.02562 * 19 17 16 22 22 H 1.48499 * 109.47022 * 89.99986 * 21 19 17 23 23 H 1.48502 * 109.46769 * 209.99494 * 21 19 17 24 24 H 1.48495 * 109.47280 * 329.99669 * 21 19 17 25 25 H 1.09000 * 109.46880 * 300.00474 * 1 2 3 26 26 H 1.09001 * 109.46845 * 59.99878 * 1 2 3 27 27 H 1.09001 * 109.47452 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47261 * 239.99815 * 2 1 3 29 29 H 1.09001 * 109.46845 * 120.00122 * 2 1 3 30 30 H 1.08006 * 120.02489 * 359.95049 * 5 4 3 31 31 H 1.08001 * 119.97036 * 179.97438 * 6 5 4 32 32 H 1.08004 * 119.95038 * 180.02562 * 7 6 5 33 33 H 1.07997 * 119.97077 * 180.26039 * 8 7 6 34 34 H 1.08998 * 109.46692 * 300.00039 * 12 10 9 35 35 H 1.08994 * 109.47047 * 59.99952 * 12 10 9 36 36 H 1.08996 * 109.46853 * 180.02562 * 12 10 9 37 37 H 1.00897 * 110.99542 * 81.05070 * 13 10 9 38 38 H 1.09001 * 109.47392 * 60.00807 * 14 13 10 39 39 H 1.09001 * 109.47520 * 300.00529 * 14 13 10 40 40 H 1.09001 * 109.47002 * 299.99782 * 15 14 13 41 41 H 1.08993 * 109.46955 * 60.00219 * 15 14 13 42 42 H 1.09001 * 109.47289 * 299.99953 * 16 15 14 43 43 H 1.09004 * 109.47261 * 59.99697 * 16 15 14 44 44 H 0.96999 * 119.99682 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.3537 1.5252 0.0005 5 6 4.1999 0.4258 0.0005 6 6 5.5689 0.6094 0.0005 7 6 6.0962 1.8877 0.0000 8 6 5.2552 2.9849 -0.0057 9 6 3.8851 2.8065 -0.0005 10 6 2.9688 4.0031 -0.0016 11 1 2.1227 3.8133 0.6587 12 6 2.4605 4.2548 -1.4226 13 7 3.7043 5.1834 0.4717 14 6 2.7886 6.1797 1.0434 15 6 3.5893 7.3918 1.5237 16 6 2.6358 8.4293 2.1197 17 6 3.4245 9.6229 2.5934 18 1 4.4984 9.6400 2.4802 19 6 2.7749 10.6936 3.1703 20 7 3.4632 11.7355 3.5832 21 14 0.9174 10.6643 3.3653 22 1 0.5669 10.0635 4.6773 23 1 0.3909 12.0514 3.2996 24 1 0.3178 9.8551 2.2742 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 1.8934 -0.5138 -0.8899 29 1 1.8933 -0.5139 0.8900 30 1 3.7885 -0.5729 0.0009 31 1 6.2280 -0.2462 0.0009 32 1 7.1670 2.0292 -0.0004 33 1 5.6695 3.9822 -0.0104 34 1 3.3067 4.4446 -2.0828 35 1 1.9149 3.3791 -1.7737 36 1 1.7982 5.1205 -1.4234 37 1 4.2588 5.5850 -0.2694 38 1 2.2535 5.7406 1.8854 39 1 2.0739 6.4949 0.2832 40 1 4.3042 7.0770 2.2839 41 1 4.1241 7.8309 0.6816 42 1 1.9205 8.7443 1.3599 43 1 2.1012 7.9900 2.9620 44 1 3.0063 12.4885 3.9893 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000268842334.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:36 Heat of formation + Delta-G solvation = -31.718668 kcal Electronic energy + Delta-G solvation = -21067.799110 eV Core-core repulsion = 17984.638438 eV Total energy + Delta-G solvation = -3083.160672 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.45557 -37.97476 -36.74513 -34.08533 -32.43012 -31.92048 -30.47833 -29.81691 -28.63276 -26.20821 -24.35640 -23.49384 -22.16277 -21.67924 -20.57519 -19.91851 -18.26419 -16.74092 -16.35042 -16.15111 -15.93315 -15.19937 -14.65700 -14.38947 -14.26851 -13.99867 -13.69998 -13.47008 -13.26622 -12.89450 -12.86024 -12.60104 -12.21346 -12.11233 -11.96189 -11.84221 -11.69529 -11.50696 -11.12492 -10.97473 -10.91215 -10.75786 -10.65502 -9.91165 -9.68112 -9.53294 -9.12649 -8.87052 -8.49327 -8.28481 -8.11060 -5.99859 -3.97240 1.29158 1.38855 3.02035 3.34079 3.40954 3.45087 3.70631 4.29174 4.49329 4.58866 4.60391 4.75611 4.83054 4.92613 5.00086 5.08903 5.22369 5.29651 5.33777 5.34358 5.39064 5.46657 5.64620 5.67889 5.72164 5.75032 5.83118 5.92779 5.99030 6.13090 6.24275 6.28294 6.36434 6.49106 6.62722 6.66717 6.76465 6.97700 7.28873 7.30697 7.40618 7.49785 7.62916 7.85270 8.59832 9.06006 9.63024 11.13805 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.021894 B = 0.003257 C = 0.002954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1278.559606 B = 8594.551901 C = 9477.524338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.055 3.945 3 O -0.313 6.313 4 C 0.128 3.872 5 C -0.213 4.213 6 C -0.089 4.089 7 C -0.160 4.160 8 C -0.058 4.058 9 C -0.097 4.097 10 C 0.130 3.870 11 H 0.088 0.912 12 C -0.173 4.173 13 N -0.684 5.684 14 C 0.058 3.942 15 C -0.099 4.099 16 C -0.013 4.013 17 C -0.518 4.518 18 H 0.072 0.928 19 C 0.064 3.936 20 N -0.905 5.905 21 Si 0.881 3.119 22 H -0.277 1.277 23 H -0.289 1.289 24 H -0.266 1.266 25 H 0.067 0.933 26 H 0.066 0.934 27 H 0.076 0.924 28 H 0.059 0.941 29 H 0.060 0.940 30 H 0.123 0.877 31 H 0.119 0.881 32 H 0.121 0.879 33 H 0.137 0.863 34 H 0.055 0.945 35 H 0.061 0.939 36 H 0.058 0.942 37 H 0.339 0.661 38 H 0.066 0.934 39 H 0.025 0.975 40 H 0.062 0.938 41 H 0.051 0.949 42 H 0.013 0.987 43 H 0.011 0.989 44 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.800 -26.645 -10.633 28.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.020 4.020 3 O -0.227 6.227 4 C 0.083 3.917 5 C -0.232 4.232 6 C -0.108 4.108 7 C -0.178 4.178 8 C -0.076 4.076 9 C -0.098 4.098 10 C 0.020 3.980 11 H 0.106 0.894 12 C -0.232 4.232 13 N -0.314 5.314 14 C -0.071 4.071 15 C -0.137 4.137 16 C -0.051 4.051 17 C -0.556 4.556 18 H 0.090 0.910 19 C -0.136 4.136 20 N -0.545 5.545 21 Si 0.708 3.292 22 H -0.203 1.203 23 H -0.215 1.215 24 H -0.191 1.191 25 H 0.086 0.914 26 H 0.085 0.915 27 H 0.095 0.905 28 H 0.077 0.923 29 H 0.078 0.922 30 H 0.141 0.859 31 H 0.137 0.863 32 H 0.139 0.861 33 H 0.155 0.845 34 H 0.074 0.926 35 H 0.080 0.920 36 H 0.077 0.923 37 H 0.157 0.843 38 H 0.085 0.915 39 H 0.044 0.956 40 H 0.080 0.920 41 H 0.070 0.930 42 H 0.031 0.969 43 H 0.029 0.971 44 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -1.839 -26.597 -9.932 28.451 hybrid contribution -1.257 0.135 -0.569 1.387 sum -3.097 -26.462 -10.502 28.638 Atomic orbital electron populations 1.21775 0.92806 1.02709 1.03672 1.22741 0.95826 0.82296 1.01147 1.86086 1.19104 1.28822 1.88663 1.18790 0.82164 0.93546 0.97244 1.21117 0.94451 0.97584 1.10021 1.20878 0.94199 0.97298 0.98388 1.21095 0.99910 0.92482 1.04310 1.20933 0.91649 0.99536 0.95512 1.19248 0.94392 0.91414 1.04742 1.20196 0.94201 0.88588 0.95049 0.89429 1.22411 1.01462 1.02085 0.97221 1.60626 1.25414 1.07982 1.37398 1.22167 0.94336 0.92527 0.98027 1.21440 0.98707 0.93365 1.00197 1.19541 0.95481 0.94566 0.95503 1.21166 0.95595 0.99911 1.38905 0.91025 1.25048 0.98203 0.95357 0.95023 1.69922 1.35778 1.07132 1.41650 0.86764 0.86353 0.77083 0.78993 1.20309 1.21467 1.19075 0.91397 0.91534 0.90521 0.92282 0.92200 0.85931 0.86251 0.86054 0.84519 0.92583 0.91975 0.92283 0.84317 0.91518 0.95642 0.91965 0.93042 0.96872 0.97075 0.92812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.98 10.28 37.16 0.38 -0.60 16 2 C 0.06 0.44 5.46 37.16 0.20 0.64 16 3 O -0.31 -3.57 9.28 -19.44 -0.18 -3.75 16 4 C 0.13 1.54 6.66 -39.22 -0.26 1.28 16 5 C -0.21 -2.21 9.04 -39.44 -0.36 -2.56 16 6 C -0.09 -0.89 10.04 -39.61 -0.40 -1.28 16 7 C -0.16 -1.70 10.04 -39.56 -0.40 -2.09 16 8 C -0.06 -0.70 9.32 -39.60 -0.37 -1.07 16 9 C -0.10 -1.24 5.10 -104.47 -0.53 -1.77 16 10 C 0.13 1.72 2.46 -68.86 -0.17 1.55 16 11 H 0.09 1.27 7.51 -51.93 -0.39 0.88 16 12 C -0.17 -2.04 9.14 37.16 0.34 -1.70 16 13 N -0.68 -9.85 5.10 -107.94 -0.55 -10.40 16 14 C 0.06 0.97 5.48 -3.82 -0.02 0.95 16 15 C -0.10 -2.00 5.41 -26.73 -0.14 -2.15 16 16 C -0.01 -0.32 4.04 -27.89 -0.11 -0.43 16 17 C -0.52 -15.13 9.66 -34.44 -0.33 -15.46 16 18 H 0.07 2.24 7.99 -52.49 -0.42 1.82 16 19 C 0.06 1.92 5.47 -17.82 -0.10 1.82 16 20 N -0.91 -28.49 13.96 55.43 0.77 -27.71 16 21 Si 0.88 22.19 27.47 -169.99 -4.67 17.52 16 22 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 23 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 24 H -0.27 -6.44 6.54 56.52 0.37 -6.07 16 25 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.08 0.34 8.14 -51.93 -0.42 -0.09 16 28 H 0.06 0.40 7.66 -51.93 -0.40 0.00 16 29 H 0.06 0.43 7.66 -51.93 -0.40 0.03 16 30 H 0.12 1.00 6.30 -52.48 -0.33 0.66 16 31 H 0.12 0.89 8.06 -52.49 -0.42 0.46 16 32 H 0.12 1.05 8.06 -52.48 -0.42 0.63 16 33 H 0.14 1.60 6.84 -52.49 -0.36 1.24 16 34 H 0.06 0.62 8.13 -51.93 -0.42 0.20 16 35 H 0.06 0.71 8.05 -51.93 -0.42 0.29 16 36 H 0.06 0.71 7.45 -51.93 -0.39 0.32 16 37 H 0.34 4.50 8.00 -39.29 -0.31 4.19 16 38 H 0.07 1.14 8.06 -51.93 -0.42 0.72 16 39 H 0.03 0.42 7.44 -51.93 -0.39 0.03 16 40 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 41 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 42 H 0.01 0.32 7.20 -51.93 -0.37 -0.06 16 43 H 0.01 0.27 7.57 -51.93 -0.39 -0.13 16 44 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 LS Contribution 355.16 15.07 5.35 5.35 Total: -1.00 -31.97 355.16 -9.08 -41.04 By element: Atomic # 1 Polarization: 8.37 SS G_CDS: -7.53 Total: 0.83 kcal Atomic # 6 Polarization: -20.62 SS G_CDS: -2.27 Total: -22.88 kcal Atomic # 7 Polarization: -38.34 SS G_CDS: 0.22 Total: -38.11 kcal Atomic # 8 Polarization: -3.57 SS G_CDS: -0.18 Total: -3.75 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -4.67 Total: 17.52 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -31.97 -9.08 -41.04 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000268842334.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.323 kcal (2) G-P(sol) polarization free energy of solvation -31.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.042 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds