Wall clock time and date at job start Mon Mar 30 2020 02:10:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.42895 * 109.47062 * 2 1 4 4 C 1.35904 * 116.99710 * 179.97438 * 3 2 1 5 5 C 1.38746 * 120.05820 * 0.02562 * 4 3 2 6 6 C 1.38120 * 119.94427 * 179.97438 * 5 4 3 7 7 C 1.38280 * 120.05984 * 359.97438 * 6 5 4 8 8 C 1.38250 * 120.10860 * 359.74819 * 7 6 5 9 9 C 1.38163 * 120.05274 * 0.50277 * 8 7 6 10 10 C 1.50708 * 120.02641 * 179.77236 * 9 8 7 11 11 H 1.08999 * 109.46904 * 219.72719 * 10 9 8 12 12 C 1.52999 * 109.47150 * 99.72806 * 10 9 8 13 13 N 1.46903 * 109.46830 * 339.72504 * 10 9 8 14 14 C 1.46898 * 110.99673 * 204.99929 * 13 10 9 15 15 C 1.53006 * 109.47006 * 180.02562 * 14 13 10 16 16 C 1.52997 * 109.47127 * 180.02562 * 15 14 13 17 17 C 1.50696 * 109.47055 * 179.97438 * 16 15 14 18 18 H 1.08000 * 120.00290 * 0.02562 * 17 16 15 19 19 C 1.37887 * 120.00079 * 179.97438 * 17 16 15 20 20 N 1.31514 * 119.99907 * 180.02562 * 19 17 16 21 21 Si 1.86800 * 119.99654 * 0.02562 * 19 17 16 22 22 H 1.48499 * 109.47022 * 89.99986 * 21 19 17 23 23 H 1.48502 * 109.46769 * 209.99494 * 21 19 17 24 24 H 1.48495 * 109.47280 * 329.99669 * 21 19 17 25 25 H 1.09000 * 109.46880 * 300.00474 * 1 2 3 26 26 H 1.09001 * 109.46845 * 59.99878 * 1 2 3 27 27 H 1.09001 * 109.47452 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47261 * 239.99815 * 2 1 3 29 29 H 1.09001 * 109.46845 * 120.00122 * 2 1 3 30 30 H 1.08006 * 120.02489 * 359.95049 * 5 4 3 31 31 H 1.08001 * 119.97036 * 179.97438 * 6 5 4 32 32 H 1.08004 * 119.95038 * 180.02562 * 7 6 5 33 33 H 1.07997 * 119.97077 * 180.26039 * 8 7 6 34 34 H 1.08998 * 109.46692 * 300.00039 * 12 10 9 35 35 H 1.08994 * 109.47047 * 59.99952 * 12 10 9 36 36 H 1.08996 * 109.46853 * 180.02562 * 12 10 9 37 37 H 1.00897 * 110.99542 * 81.05070 * 13 10 9 38 38 H 1.09001 * 109.47392 * 60.00807 * 14 13 10 39 39 H 1.09001 * 109.47520 * 300.00529 * 14 13 10 40 40 H 1.09001 * 109.47002 * 299.99782 * 15 14 13 41 41 H 1.08993 * 109.46955 * 60.00219 * 15 14 13 42 42 H 1.09001 * 109.47289 * 299.99953 * 16 15 14 43 43 H 1.09004 * 109.47261 * 59.99697 * 16 15 14 44 44 H 0.96999 * 119.99682 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.3537 1.5252 0.0005 5 6 4.1999 0.4258 0.0005 6 6 5.5689 0.6094 0.0005 7 6 6.0962 1.8877 0.0000 8 6 5.2552 2.9849 -0.0057 9 6 3.8851 2.8065 -0.0005 10 6 2.9688 4.0031 -0.0016 11 1 2.1227 3.8133 0.6587 12 6 2.4605 4.2548 -1.4226 13 7 3.7043 5.1834 0.4717 14 6 2.7886 6.1797 1.0434 15 6 3.5893 7.3918 1.5237 16 6 2.6358 8.4293 2.1197 17 6 3.4245 9.6229 2.5934 18 1 4.4984 9.6400 2.4802 19 6 2.7749 10.6936 3.1703 20 7 3.4632 11.7355 3.5832 21 14 0.9174 10.6643 3.3653 22 1 0.5669 10.0635 4.6773 23 1 0.3909 12.0514 3.2996 24 1 0.3178 9.8551 2.2742 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 1.8934 -0.5138 -0.8899 29 1 1.8933 -0.5139 0.8900 30 1 3.7885 -0.5729 0.0009 31 1 6.2280 -0.2462 0.0009 32 1 7.1670 2.0292 -0.0004 33 1 5.6695 3.9822 -0.0104 34 1 3.3067 4.4446 -2.0828 35 1 1.9149 3.3791 -1.7737 36 1 1.7982 5.1205 -1.4234 37 1 4.2588 5.5850 -0.2694 38 1 2.2535 5.7406 1.8854 39 1 2.0739 6.4949 0.2832 40 1 4.3042 7.0770 2.2839 41 1 4.1241 7.8309 0.6816 42 1 1.9205 8.7443 1.3599 43 1 2.1012 7.9900 2.9620 44 1 3.0063 12.4885 3.9893 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000268842334.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:36 Heat of formation + Delta-G solvation = -50.492120 kcal Electronic energy + Delta-G solvation = -21068.613188 eV Core-core repulsion = 17984.638438 eV Total energy + Delta-G solvation = -3083.974750 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.26435 -38.87833 -37.81181 -35.81904 -34.10701 -32.78660 -31.72192 -30.76325 -29.62743 -27.89964 -25.06214 -24.67443 -23.51370 -22.56900 -21.92588 -21.23964 -19.11302 -18.83960 -17.15076 -16.99705 -16.84274 -16.49185 -16.29345 -15.56218 -15.34399 -15.22188 -14.70827 -14.58821 -14.42748 -14.22405 -13.78951 -13.73176 -13.39036 -13.36778 -13.06227 -12.84097 -12.67768 -12.58429 -12.52072 -12.45162 -11.98939 -11.79137 -11.70526 -11.60303 -11.49357 -11.37600 -11.19912 -10.75937 -9.71500 -9.37716 -9.00136 -8.29046 -6.33088 0.46261 0.56456 1.36157 1.37826 1.50207 2.32799 2.36811 2.87005 3.06200 3.17279 3.81617 3.97467 4.07079 4.13530 4.16930 4.24300 4.26317 4.29667 4.37823 4.42262 4.46370 4.60184 4.65990 4.72168 4.77967 4.83154 4.94617 4.96196 4.98139 5.00765 5.12791 5.13802 5.21609 5.24162 5.45671 5.50318 5.57790 5.62396 5.66870 5.68924 5.95616 6.15336 6.30611 6.48755 6.54029 6.75223 7.31416 8.88047 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.021894 B = 0.003257 C = 0.002954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1278.559606 B = 8594.551901 C = 9477.524338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.047 3.953 3 O -0.331 6.331 4 C 0.116 3.884 5 C -0.215 4.215 6 C -0.089 4.089 7 C -0.167 4.167 8 C -0.073 4.073 9 C -0.119 4.119 10 C 0.136 3.864 11 H 0.073 0.927 12 C -0.165 4.165 13 N -0.685 5.685 14 C 0.072 3.928 15 C -0.089 4.089 16 C -0.010 4.010 17 C -0.533 4.533 18 H 0.030 0.970 19 C 0.001 3.999 20 N -0.953 5.953 21 Si 0.954 3.046 22 H -0.267 1.267 23 H -0.283 1.283 24 H -0.246 1.246 25 H 0.057 0.943 26 H 0.061 0.939 27 H 0.100 0.900 28 H 0.072 0.928 29 H 0.068 0.932 30 H 0.146 0.854 31 H 0.148 0.852 32 H 0.139 0.861 33 H 0.133 0.867 34 H 0.061 0.939 35 H 0.064 0.936 36 H 0.056 0.944 37 H 0.345 0.655 38 H 0.064 0.936 39 H 0.033 0.967 40 H 0.048 0.952 41 H 0.049 0.951 42 H 0.020 0.980 43 H 0.017 0.983 44 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.165 -29.088 -11.383 31.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.028 4.028 3 O -0.246 6.246 4 C 0.070 3.930 5 C -0.234 4.234 6 C -0.106 4.106 7 C -0.185 4.185 8 C -0.091 4.091 9 C -0.120 4.120 10 C 0.026 3.974 11 H 0.091 0.909 12 C -0.223 4.223 13 N -0.316 5.316 14 C -0.057 4.057 15 C -0.127 4.127 16 C -0.048 4.048 17 C -0.571 4.571 18 H 0.049 0.951 19 C -0.195 4.195 20 N -0.594 5.594 21 Si 0.777 3.223 22 H -0.192 1.192 23 H -0.209 1.209 24 H -0.169 1.169 25 H 0.076 0.924 26 H 0.080 0.920 27 H 0.118 0.882 28 H 0.091 0.909 29 H 0.086 0.914 30 H 0.163 0.837 31 H 0.165 0.835 32 H 0.157 0.843 33 H 0.150 0.850 34 H 0.080 0.920 35 H 0.083 0.917 36 H 0.075 0.925 37 H 0.164 0.836 38 H 0.082 0.918 39 H 0.052 0.948 40 H 0.067 0.933 41 H 0.068 0.932 42 H 0.038 0.962 43 H 0.035 0.965 44 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -3.197 -29.067 -10.698 31.138 hybrid contribution -0.716 0.842 -0.338 1.156 sum -3.913 -28.225 -11.035 30.557 Atomic orbital electron populations 1.21803 0.91918 1.04041 1.02945 1.23009 0.96574 0.81044 1.02139 1.86068 1.18882 1.30947 1.88657 1.18946 0.82783 0.93752 0.97495 1.21426 0.94606 0.98188 1.09138 1.21250 0.94512 0.97909 0.96969 1.21360 1.00741 0.92503 1.03898 1.21014 0.91741 1.00010 0.96312 1.19288 0.94649 0.91652 1.06433 1.20104 0.93780 0.88185 0.95349 0.90923 1.22320 1.01546 1.02015 0.96454 1.60540 1.25187 1.07780 1.38117 1.21884 0.94031 0.91505 0.98281 1.21252 0.97985 0.93904 0.99576 1.19488 0.95753 0.93695 0.95871 1.21526 0.94357 1.02084 1.39138 0.95138 1.26069 1.04191 0.94728 0.94533 1.70078 1.38317 1.08155 1.42861 0.85607 0.79146 0.77687 0.79895 1.19183 1.20861 1.16937 0.92370 0.91981 0.88152 0.90942 0.91417 0.83683 0.83467 0.84347 0.84952 0.91998 0.91703 0.92546 0.83589 0.91765 0.94833 0.93309 0.93197 0.96157 0.96480 0.92495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.69 10.28 71.98 0.74 -0.95 16 2 C 0.05 0.65 5.46 71.98 0.39 1.05 16 3 O -0.33 -7.22 9.28 -92.47 -0.86 -8.08 16 4 C 0.12 2.66 6.66 22.50 0.15 2.81 16 5 C -0.22 -3.98 9.04 22.36 0.20 -3.78 16 6 C -0.09 -1.53 10.04 22.25 0.22 -1.31 16 7 C -0.17 -3.27 10.04 22.28 0.22 -3.05 16 8 C -0.07 -1.70 9.32 22.25 0.21 -1.50 16 9 C -0.12 -2.98 5.10 -19.77 -0.10 -3.08 16 10 C 0.14 3.51 2.46 44.17 0.11 3.62 16 11 H 0.07 2.09 7.51 -2.39 -0.02 2.07 16 12 C -0.16 -3.72 9.14 71.98 0.66 -3.06 16 13 N -0.69 -19.40 5.10 -495.42 -2.52 -21.92 16 14 C 0.07 2.34 5.48 86.31 0.47 2.81 16 15 C -0.09 -3.60 5.41 30.60 0.17 -3.43 16 16 C -0.01 -0.49 4.04 29.85 0.12 -0.37 16 17 C -0.53 -31.83 9.66 25.60 0.25 -31.58 16 18 H 0.03 2.00 7.99 -2.91 -0.02 1.98 16 19 C 0.00 0.07 5.47 84.66 0.46 0.53 16 20 N -0.95 -61.31 13.96 21.45 0.30 -61.01 16 21 Si 0.95 45.32 27.47 68.60 1.88 47.20 16 22 H -0.27 -12.18 7.11 99.48 0.71 -11.48 16 23 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 24 H -0.25 -10.81 6.54 99.48 0.65 -10.16 16 25 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 26 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 27 H 0.10 0.64 8.14 -2.39 -0.02 0.62 16 28 H 0.07 0.80 7.66 -2.39 -0.02 0.79 16 29 H 0.07 0.82 7.66 -2.39 -0.02 0.81 16 30 H 0.15 1.92 6.30 -2.91 -0.02 1.90 16 31 H 0.15 1.66 8.06 -2.91 -0.02 1.64 16 32 H 0.14 2.13 8.06 -2.91 -0.02 2.11 16 33 H 0.13 3.09 6.84 -2.91 -0.02 3.07 16 34 H 0.06 1.31 8.13 -2.39 -0.02 1.29 16 35 H 0.06 1.42 8.05 -2.39 -0.02 1.40 16 36 H 0.06 1.29 7.45 -2.39 -0.02 1.27 16 37 H 0.35 9.00 8.00 -89.70 -0.72 8.29 16 38 H 0.06 2.13 8.06 -2.39 -0.02 2.11 16 39 H 0.03 1.04 7.44 -2.39 -0.02 1.03 16 40 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 41 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 42 H 0.02 0.95 7.20 -2.39 -0.02 0.93 16 43 H 0.02 0.80 7.57 -2.38 -0.02 0.78 16 44 H 0.27 15.90 8.31 -92.71 -0.77 15.13 16 Total: -1.00 -69.67 355.16 3.26 -66.41 By element: Atomic # 1 Polarization: 18.49 SS G_CDS: 0.19 Total: 18.68 kcal Atomic # 6 Polarization: -45.55 SS G_CDS: 4.28 Total: -41.28 kcal Atomic # 7 Polarization: -80.71 SS G_CDS: -2.22 Total: -82.93 kcal Atomic # 8 Polarization: -7.22 SS G_CDS: -0.86 Total: -8.08 kcal Atomic # 14 Polarization: 45.32 SS G_CDS: 1.88 Total: 47.20 kcal Total: -69.67 3.26 -66.41 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000268842334.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.918 kcal (2) G-P(sol) polarization free energy of solvation -69.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.410 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds