Wall clock time and date at job start Mon Mar 30 2020 02:41:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 C 1.50706 * 109.47282 * 2 1 4 4 N 1.30832 * 125.89788 * 274.91898 * 3 2 1 5 5 N 1.40082 * 108.20349 * 180.25714 * 4 3 2 6 6 C 1.46505 * 126.03456 * 179.70230 * 5 4 3 7 7 C 1.34950 * 107.92539 * 359.72262 * 5 4 3 8 8 C 1.50697 * 126.12397 * 179.97438 * 7 5 4 9 9 C 1.53002 * 109.47116 * 93.93306 * 8 7 5 10 10 C 1.35313 * 107.74407 * 359.97438 * 7 5 4 11 11 C 1.50695 * 126.03653 * 179.97438 * 10 7 5 12 12 N 1.46505 * 109.47287 * 270.45526 * 11 10 7 13 13 C 1.36933 * 119.99628 * 95.78390 * 12 11 10 14 14 H 1.08001 * 119.99504 * 215.80424 * 13 12 11 15 15 C 1.38807 * 120.00746 * 35.80614 * 13 12 11 16 16 N 1.31621 * 119.99841 * 18.60255 * 15 13 12 17 17 Si 1.86801 * 120.00243 * 198.60981 * 15 13 12 18 18 H 1.48503 * 109.47011 * 179.97438 * 17 15 13 19 19 H 1.48498 * 109.46904 * 299.99598 * 17 15 13 20 20 H 1.48507 * 109.47017 * 59.99729 * 17 15 13 21 21 C 1.46492 * 119.99640 * 275.78126 * 12 11 10 22 22 C 1.53001 * 117.49569 * 183.77481 * 21 12 11 23 23 C 1.52993 * 60.00313 * 252.51312 * 22 21 12 24 24 H 1.09007 * 109.47336 * 64.69134 * 1 2 3 25 25 H 1.08999 * 109.47567 * 184.69394 * 1 2 3 26 26 H 1.09005 * 109.47000 * 304.69284 * 1 2 3 27 27 H 1.09000 * 109.47396 * 240.00127 * 2 1 3 28 28 H 1.09006 * 109.47614 * 120.00112 * 2 1 3 29 29 H 1.09005 * 109.46921 * 270.02144 * 6 5 4 30 30 H 1.08994 * 109.47585 * 30.02790 * 6 5 4 31 31 H 1.09002 * 109.47155 * 150.03075 * 6 5 4 32 32 H 1.09007 * 109.47128 * 213.92723 * 8 7 5 33 33 H 1.08998 * 109.47789 * 333.92975 * 8 7 5 34 34 H 1.09000 * 109.47226 * 304.78198 * 9 8 7 35 35 H 1.08999 * 109.47288 * 64.78644 * 9 8 7 36 36 H 1.09002 * 109.46812 * 184.78294 * 9 8 7 37 37 H 1.09005 * 109.47072 * 150.45670 * 11 10 7 38 38 H 1.08998 * 109.47320 * 30.45661 * 11 10 7 39 39 H 0.96994 * 120.00400 * 174.95596 * 16 15 13 40 40 H 1.08997 * 115.55775 * 329.48025 * 21 12 11 41 41 H 1.08998 * 117.50322 * 0.02562 * 22 21 12 42 42 H 1.09005 * 117.49826 * 145.02351 * 22 21 12 43 43 H 1.09008 * 117.49793 * 252.51456 * 23 22 21 44 44 H 1.08993 * 117.52359 * 107.48156 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.2023 2.1744 -1.0559 5 7 2.6873 3.4184 -0.6322 6 6 3.0186 4.5541 -1.4965 7 6 2.7957 3.3859 0.7125 8 6 3.2788 4.5099 1.5923 9 6 2.0796 5.3191 2.0905 10 6 2.3929 2.1632 1.1292 11 6 2.3484 1.6834 2.5571 12 7 3.6327 1.0714 2.9069 13 6 4.5922 1.8110 3.5451 14 1 5.6361 1.6527 3.3177 15 6 4.2234 2.7642 4.4844 16 7 3.0277 2.7196 5.0326 17 14 5.4240 4.1104 4.9700 18 1 4.7927 4.9951 5.9820 19 1 6.6493 3.4977 5.5430 20 1 5.7840 4.9089 3.7708 21 6 3.8902 -0.3318 2.5740 22 6 5.2144 -0.9376 3.0435 23 6 4.9990 -0.6255 1.5614 24 1 -0.3634 0.4393 -0.9291 25 1 -0.3634 -1.0242 0.0841 26 1 -0.3633 0.5850 0.8450 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 4.0644 4.4890 -1.7969 30 1 2.3841 4.5337 -2.3825 31 1 2.8540 5.4845 -0.9530 32 1 3.8184 4.0977 2.4450 33 1 3.9429 5.1587 1.0213 34 1 1.4921 5.6602 1.2381 35 1 1.4597 4.6926 2.7318 36 1 2.4329 6.1811 2.6565 37 1 1.5526 0.9467 2.6682 38 1 2.1563 2.5282 3.2185 39 1 2.7955 3.3401 5.7411 40 1 3.0148 -0.9810 2.5642 41 1 5.8937 -0.2924 3.6006 42 1 5.2102 -1.9857 3.3429 43 1 4.8530 -1.4682 0.8856 44 1 5.5364 0.2253 1.1426 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000271117864.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:40 Heat of formation + Delta-G solvation = 110.902988 kcal Electronic energy + Delta-G solvation = -23344.290829 eV Core-core repulsion = 20299.607447 eV Total energy + Delta-G solvation = -3044.683382 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.64934 -36.93118 -34.54970 -33.91667 -32.55291 -31.39019 -30.52869 -28.39039 -26.67931 -24.94125 -23.61520 -22.93726 -22.25708 -21.28650 -19.91026 -18.75561 -18.46491 -16.40828 -15.64558 -15.38546 -15.04819 -14.31530 -14.20547 -13.99115 -13.67824 -13.52001 -13.06984 -12.98430 -12.61817 -12.49619 -12.06442 -11.90576 -11.63707 -11.43668 -11.34020 -11.08538 -10.95694 -10.85807 -10.66816 -10.54302 -10.49359 -10.32449 -10.27555 -9.99919 -9.58087 -9.39908 -9.20716 -8.40895 -8.34657 -7.39110 -6.44534 -5.81346 -3.32624 2.58687 3.13149 3.29706 3.37005 3.38685 3.57362 4.42139 4.95645 5.00629 5.25546 5.34891 5.38346 5.41042 5.46373 5.49866 5.56732 5.64939 5.78254 5.87995 5.93725 6.00108 6.02201 6.13270 6.18961 6.22184 6.28569 6.33887 6.48720 6.54402 6.58168 6.61107 6.67294 6.76142 6.80615 6.96460 7.08294 7.18945 7.29922 7.49340 7.76255 7.80116 7.85885 8.48828 8.55525 9.19889 9.82697 10.40605 11.20820 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.013388 B = 0.009336 C = 0.006728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2090.897576 B = 2998.442016 C = 4160.480125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.040 4.040 3 C 0.082 3.918 4 N -0.319 5.319 5 N -0.388 5.388 6 C 0.109 3.891 7 C 0.095 3.905 8 C -0.069 4.069 9 C -0.139 4.139 10 C -0.215 4.215 11 C 0.214 3.786 12 N -0.544 5.544 13 C -0.246 4.246 14 H 0.059 0.941 15 C 0.015 3.985 16 N -0.888 5.888 17 Si 0.884 3.116 18 H -0.288 1.288 19 H -0.281 1.281 20 H -0.280 1.280 21 C 0.134 3.866 22 C -0.194 4.194 23 C -0.226 4.226 24 H 0.050 0.950 25 H 0.055 0.945 26 H 0.058 0.942 27 H 0.066 0.934 28 H 0.084 0.916 29 H 0.063 0.937 30 H 0.079 0.921 31 H 0.078 0.922 32 H 0.117 0.883 33 H 0.055 0.945 34 H 0.041 0.959 35 H 0.068 0.932 36 H 0.053 0.947 37 H 0.029 0.971 38 H 0.111 0.889 39 H 0.257 0.743 40 H 0.083 0.917 41 H 0.097 0.903 42 H 0.073 0.927 43 H 0.070 0.930 44 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.798 1.147 -7.904 8.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.079 4.079 3 C -0.084 4.084 4 N -0.141 5.141 5 N -0.172 5.172 6 C -0.033 4.033 7 C -0.031 4.031 8 C -0.108 4.108 9 C -0.197 4.197 10 C -0.228 4.228 11 C 0.088 3.912 12 N -0.260 5.260 13 C -0.376 4.376 14 H 0.076 0.924 15 C -0.184 4.184 16 N -0.531 5.531 17 Si 0.713 3.287 18 H -0.213 1.213 19 H -0.208 1.208 20 H -0.206 1.206 21 C 0.024 3.976 22 C -0.232 4.232 23 C -0.267 4.267 24 H 0.069 0.931 25 H 0.074 0.926 26 H 0.077 0.923 27 H 0.085 0.915 28 H 0.103 0.897 29 H 0.082 0.918 30 H 0.098 0.902 31 H 0.097 0.903 32 H 0.135 0.865 33 H 0.073 0.927 34 H 0.060 0.940 35 H 0.087 0.913 36 H 0.072 0.928 37 H 0.047 0.953 38 H 0.129 0.871 39 H 0.068 0.932 40 H 0.101 0.899 41 H 0.115 0.885 42 H 0.092 0.908 43 H 0.088 0.912 44 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -2.980 1.536 -9.129 9.725 hybrid contribution 1.040 0.784 0.873 1.568 sum -1.939 2.321 -8.256 8.793 Atomic orbital electron populations 1.21689 0.95093 1.01248 1.01943 1.19895 0.95318 0.89770 1.02914 1.22050 0.99196 0.96189 0.90969 1.77070 1.22849 0.91205 1.22964 1.48150 1.53124 1.11222 1.04701 1.21594 1.01059 0.86052 0.94585 1.20751 1.01226 0.97707 0.83390 1.20360 0.97877 0.93257 0.99295 1.21663 0.97970 0.99587 1.00446 1.21053 1.09783 0.92764 0.99205 1.19400 0.85778 0.98697 0.87326 1.43363 1.15076 1.03676 1.63864 1.18913 0.88535 1.14300 1.15887 0.92387 1.25047 0.96419 1.00676 0.96262 1.69819 1.20004 1.38205 1.25106 0.86695 0.81186 0.82590 0.78218 1.21327 1.20754 1.20641 1.21035 0.89873 0.87694 0.98987 1.23041 1.03577 0.99636 0.96996 1.23348 1.09445 1.01977 0.91908 0.93088 0.92610 0.92337 0.91528 0.89711 0.91843 0.90231 0.90296 0.86534 0.92667 0.93996 0.91337 0.92766 0.95283 0.87128 0.93242 0.89929 0.88463 0.90818 0.91158 0.90188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.02 9.89 37.15 0.37 -1.65 16 2 C -0.04 -0.66 6.23 -27.89 -0.17 -0.83 16 3 C 0.08 1.63 6.47 -82.41 -0.53 1.09 16 4 N -0.32 -6.39 12.58 33.67 0.42 -5.97 16 5 N -0.39 -7.25 4.01 -63.88 -0.26 -7.51 16 6 C 0.11 1.48 11.07 59.85 0.66 2.14 16 7 C 0.10 1.92 6.18 -82.27 -0.51 1.41 16 8 C -0.07 -1.31 5.58 -27.88 -0.16 -1.47 16 9 C -0.14 -2.33 9.89 37.16 0.37 -1.96 16 10 C -0.22 -4.59 5.67 -105.06 -0.60 -5.18 16 11 C 0.21 4.92 5.03 -5.19 -0.03 4.89 16 12 N -0.54 -12.98 2.76 -167.03 -0.46 -13.44 16 13 C -0.25 -6.32 7.86 -15.06 -0.12 -6.44 16 14 H 0.06 1.54 6.85 -52.49 -0.36 1.18 16 15 C 0.02 0.39 3.70 -17.43 -0.06 0.33 16 16 N -0.89 -23.50 11.24 55.49 0.62 -22.88 16 17 Si 0.88 20.29 28.61 -169.99 -4.86 15.43 16 18 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 19 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 20 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 21 C 0.13 2.84 5.78 -67.93 -0.39 2.45 16 22 C -0.19 -3.88 9.77 -26.73 -0.26 -4.14 16 23 C -0.23 -4.46 10.35 -26.73 -0.28 -4.74 16 24 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 25 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 26 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 27 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 28 H 0.08 1.43 5.82 -51.93 -0.30 1.13 16 29 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.08 0.95 8.14 -51.93 -0.42 0.52 16 31 H 0.08 0.91 7.57 -51.93 -0.39 0.52 16 32 H 0.12 2.59 4.70 -51.93 -0.24 2.35 16 33 H 0.05 0.93 7.54 -51.93 -0.39 0.54 16 34 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.07 1.26 7.86 -51.93 -0.41 0.86 16 36 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 37 H 0.03 0.65 7.74 -51.93 -0.40 0.25 16 38 H 0.11 2.78 4.82 -51.93 -0.25 2.53 16 39 H 0.26 6.64 8.32 -40.82 -0.34 6.30 16 40 H 0.08 1.64 7.22 -51.93 -0.37 1.27 16 41 H 0.10 2.12 6.55 -51.93 -0.34 1.78 16 42 H 0.07 1.30 8.14 -51.93 -0.42 0.87 16 43 H 0.07 1.24 8.14 -51.92 -0.42 0.81 16 44 H 0.08 1.75 8.14 -51.93 -0.42 1.33 16 LS Contribution 348.56 15.07 5.25 5.25 Total: -1.00 -28.41 348.56 -8.24 -36.65 By element: Atomic # 1 Polarization: 13.81 SS G_CDS: -7.25 Total: 6.56 kcal Atomic # 6 Polarization: -12.39 SS G_CDS: -1.71 Total: -14.10 kcal Atomic # 7 Polarization: -50.12 SS G_CDS: 0.33 Total: -49.79 kcal Atomic # 14 Polarization: 20.29 SS G_CDS: -4.86 Total: 15.43 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -28.41 -8.24 -36.65 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271117864.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.551 kcal (2) G-P(sol) polarization free energy of solvation -28.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 119.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.648 kcal (6) G-S(sol) free energy of system = (1) + (5) 110.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds