Wall clock time and date at job start Mon Mar 30 2020 02:41:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 C 1.50706 * 109.47282 * 2 1 4 4 N 1.30832 * 125.89788 * 274.91898 * 3 2 1 5 5 N 1.40082 * 108.20349 * 180.25714 * 4 3 2 6 6 C 1.46505 * 126.03456 * 179.70230 * 5 4 3 7 7 C 1.34950 * 107.92539 * 359.72262 * 5 4 3 8 8 C 1.50697 * 126.12397 * 179.97438 * 7 5 4 9 9 C 1.53002 * 109.47116 * 93.93306 * 8 7 5 10 10 C 1.35313 * 107.74407 * 359.97438 * 7 5 4 11 11 C 1.50695 * 126.03653 * 179.97438 * 10 7 5 12 12 N 1.46505 * 109.47287 * 270.45526 * 11 10 7 13 13 C 1.36933 * 119.99628 * 95.78390 * 12 11 10 14 14 H 1.08001 * 119.99504 * 215.80424 * 13 12 11 15 15 C 1.38807 * 120.00746 * 35.80614 * 13 12 11 16 16 N 1.31621 * 119.99841 * 18.60255 * 15 13 12 17 17 Si 1.86801 * 120.00243 * 198.60981 * 15 13 12 18 18 H 1.48503 * 109.47011 * 179.97438 * 17 15 13 19 19 H 1.48498 * 109.46904 * 299.99598 * 17 15 13 20 20 H 1.48507 * 109.47017 * 59.99729 * 17 15 13 21 21 C 1.46492 * 119.99640 * 275.78126 * 12 11 10 22 22 C 1.53001 * 117.49569 * 183.77481 * 21 12 11 23 23 C 1.52993 * 60.00313 * 252.51312 * 22 21 12 24 24 H 1.09007 * 109.47336 * 64.69134 * 1 2 3 25 25 H 1.08999 * 109.47567 * 184.69394 * 1 2 3 26 26 H 1.09005 * 109.47000 * 304.69284 * 1 2 3 27 27 H 1.09000 * 109.47396 * 240.00127 * 2 1 3 28 28 H 1.09006 * 109.47614 * 120.00112 * 2 1 3 29 29 H 1.09005 * 109.46921 * 270.02144 * 6 5 4 30 30 H 1.08994 * 109.47585 * 30.02790 * 6 5 4 31 31 H 1.09002 * 109.47155 * 150.03075 * 6 5 4 32 32 H 1.09007 * 109.47128 * 213.92723 * 8 7 5 33 33 H 1.08998 * 109.47789 * 333.92975 * 8 7 5 34 34 H 1.09000 * 109.47226 * 304.78198 * 9 8 7 35 35 H 1.08999 * 109.47288 * 64.78644 * 9 8 7 36 36 H 1.09002 * 109.46812 * 184.78294 * 9 8 7 37 37 H 1.09005 * 109.47072 * 150.45670 * 11 10 7 38 38 H 1.08998 * 109.47320 * 30.45661 * 11 10 7 39 39 H 0.96994 * 120.00400 * 174.95596 * 16 15 13 40 40 H 1.08997 * 115.55775 * 329.48025 * 21 12 11 41 41 H 1.08998 * 117.50322 * 0.02562 * 22 21 12 42 42 H 1.09005 * 117.49826 * 145.02351 * 22 21 12 43 43 H 1.09008 * 117.49793 * 252.51456 * 23 22 21 44 44 H 1.08993 * 117.52359 * 107.48156 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.2023 2.1744 -1.0559 5 7 2.6873 3.4184 -0.6322 6 6 3.0186 4.5541 -1.4965 7 6 2.7957 3.3859 0.7125 8 6 3.2788 4.5099 1.5923 9 6 2.0796 5.3191 2.0905 10 6 2.3929 2.1632 1.1292 11 6 2.3484 1.6834 2.5571 12 7 3.6327 1.0714 2.9069 13 6 4.5922 1.8110 3.5451 14 1 5.6361 1.6527 3.3177 15 6 4.2234 2.7642 4.4844 16 7 3.0277 2.7196 5.0326 17 14 5.4240 4.1104 4.9700 18 1 4.7927 4.9951 5.9820 19 1 6.6493 3.4977 5.5430 20 1 5.7840 4.9089 3.7708 21 6 3.8902 -0.3318 2.5740 22 6 5.2144 -0.9376 3.0435 23 6 4.9990 -0.6255 1.5614 24 1 -0.3634 0.4393 -0.9291 25 1 -0.3634 -1.0242 0.0841 26 1 -0.3633 0.5850 0.8450 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 4.0644 4.4890 -1.7969 30 1 2.3841 4.5337 -2.3825 31 1 2.8540 5.4845 -0.9530 32 1 3.8184 4.0977 2.4450 33 1 3.9429 5.1587 1.0213 34 1 1.4921 5.6602 1.2381 35 1 1.4597 4.6926 2.7318 36 1 2.4329 6.1811 2.6565 37 1 1.5526 0.9467 2.6682 38 1 2.1563 2.5282 3.2185 39 1 2.7955 3.3401 5.7411 40 1 3.0148 -0.9810 2.5642 41 1 5.8937 -0.2924 3.6006 42 1 5.2102 -1.9857 3.3429 43 1 4.8530 -1.4682 0.8856 44 1 5.5364 0.2253 1.1426 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000271117864.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:39 Heat of formation + Delta-G solvation = 96.710379 kcal Electronic energy + Delta-G solvation = -23344.906267 eV Core-core repulsion = 20299.607447 eV Total energy + Delta-G solvation = -3045.298819 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.13651 -38.64155 -35.92283 -35.59759 -34.12106 -32.82995 -32.14415 -29.99278 -28.12421 -26.57290 -25.21579 -24.33130 -23.72370 -22.89953 -21.65443 -20.27066 -19.93752 -18.19166 -17.24073 -17.08099 -16.46534 -16.05600 -15.78287 -15.33969 -15.26271 -14.85451 -14.61528 -14.38607 -13.94681 -13.87794 -13.53180 -13.33223 -13.19324 -13.04405 -12.75264 -12.68290 -12.50682 -12.43268 -12.29372 -12.11962 -12.04350 -11.86998 -11.83873 -11.74137 -11.22339 -11.07321 -10.86614 -10.29560 -9.78989 -8.94215 -8.32423 -7.74468 -5.29131 1.08881 1.44748 1.48844 1.53573 1.81861 2.01403 2.53757 3.24435 3.51655 3.72013 3.76108 3.82486 4.08131 4.24148 4.26991 4.36468 4.38324 4.47580 4.52413 4.55157 4.61064 4.62190 4.69156 4.72312 4.77879 4.91247 4.96322 4.98673 5.07576 5.11427 5.15123 5.23705 5.32585 5.36806 5.38910 5.48391 5.55068 5.69713 5.77138 5.89351 6.05991 6.37976 6.59379 7.00250 7.27012 7.97498 8.50140 9.24239 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.013388 B = 0.009336 C = 0.006728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2090.897576 B = 2998.442016 C = 4160.480125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.039 4.039 3 C 0.076 3.924 4 N -0.333 5.333 5 N -0.387 5.387 6 C 0.098 3.902 7 C 0.090 3.910 8 C -0.069 4.069 9 C -0.129 4.129 10 C -0.242 4.242 11 C 0.226 3.774 12 N -0.557 5.557 13 C -0.250 4.250 14 H 0.043 0.957 15 C -0.012 4.012 16 N -0.909 5.909 17 Si 0.927 3.073 18 H -0.288 1.288 19 H -0.286 1.286 20 H -0.271 1.271 21 C 0.114 3.886 22 C -0.189 4.189 23 C -0.207 4.207 24 H 0.051 0.949 25 H 0.082 0.918 26 H 0.044 0.956 27 H 0.077 0.923 28 H 0.078 0.922 29 H 0.075 0.925 30 H 0.096 0.904 31 H 0.100 0.900 32 H 0.083 0.917 33 H 0.077 0.923 34 H 0.062 0.938 35 H 0.042 0.958 36 H 0.069 0.931 37 H 0.023 0.977 38 H 0.087 0.913 39 H 0.254 0.746 40 H 0.098 0.902 41 H 0.073 0.927 42 H 0.103 0.897 43 H 0.099 0.901 44 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.810 1.264 -9.356 9.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.079 4.079 3 C -0.089 4.089 4 N -0.156 5.156 5 N -0.170 5.170 6 C -0.042 4.042 7 C -0.037 4.037 8 C -0.108 4.108 9 C -0.187 4.187 10 C -0.255 4.255 11 C 0.100 3.900 12 N -0.274 5.274 13 C -0.380 4.380 14 H 0.060 0.940 15 C -0.210 4.210 16 N -0.554 5.554 17 Si 0.756 3.244 18 H -0.213 1.213 19 H -0.213 1.213 20 H -0.197 1.197 21 C 0.005 3.995 22 C -0.227 4.227 23 C -0.248 4.248 24 H 0.070 0.930 25 H 0.101 0.899 26 H 0.063 0.937 27 H 0.095 0.905 28 H 0.097 0.903 29 H 0.093 0.907 30 H 0.115 0.885 31 H 0.119 0.881 32 H 0.102 0.898 33 H 0.096 0.904 34 H 0.081 0.919 35 H 0.062 0.938 36 H 0.088 0.912 37 H 0.041 0.959 38 H 0.105 0.895 39 H 0.063 0.937 40 H 0.115 0.885 41 H 0.092 0.908 42 H 0.121 0.879 43 H 0.117 0.883 44 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -2.984 1.653 -10.617 11.151 hybrid contribution 1.070 0.747 1.270 1.820 sum -1.914 2.400 -9.347 9.838 Atomic orbital electron populations 1.21627 0.93374 1.02762 1.01375 1.19983 0.96764 0.88070 1.03046 1.22433 0.98835 0.97397 0.90262 1.77012 1.23484 0.91929 1.23174 1.48496 1.52113 1.11810 1.04630 1.22003 1.02182 0.85183 0.94879 1.20917 1.00683 0.97721 0.84411 1.20328 0.98780 0.93416 0.98239 1.21574 0.97006 0.99241 1.00909 1.20958 1.11831 0.94021 0.98701 1.19104 0.85266 0.97509 0.88121 1.43479 1.14913 1.04796 1.64187 1.18880 0.88271 1.14971 1.15901 0.93983 1.25422 0.97432 1.01822 0.96313 1.69933 1.21177 1.38733 1.25520 0.86010 0.79473 0.80872 0.78053 1.21343 1.21252 1.19681 1.21255 0.90995 0.86886 1.00375 1.23045 1.02001 1.00702 0.96940 1.23221 1.07685 1.01823 0.92069 0.92950 0.89902 0.93686 0.90451 0.90322 0.90664 0.88498 0.88115 0.89828 0.90404 0.91896 0.93837 0.91220 0.95904 0.89507 0.93652 0.88474 0.90825 0.87857 0.88304 0.92733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.60 9.89 71.98 0.71 -2.89 16 2 C -0.04 -1.26 6.23 29.85 0.19 -1.08 16 3 C 0.08 2.98 6.47 43.10 0.28 3.26 16 4 N -0.33 -12.95 12.58 -47.38 -0.60 -13.54 16 5 N -0.39 -13.85 4.01 -356.02 -1.43 -15.28 16 6 C 0.10 2.37 11.07 127.77 1.41 3.79 16 7 C 0.09 3.58 6.18 41.40 0.26 3.84 16 8 C -0.07 -2.55 5.58 29.85 0.17 -2.39 16 9 C -0.13 -4.21 9.89 71.98 0.71 -3.50 16 10 C -0.24 -10.37 5.67 -20.15 -0.11 -10.48 16 11 C 0.23 10.62 5.03 85.63 0.43 11.05 16 12 N -0.56 -27.01 2.76 -682.35 -1.89 -28.90 16 13 C -0.25 -13.09 7.86 84.03 0.66 -12.43 16 14 H 0.04 2.31 6.85 -2.91 -0.02 2.29 16 15 C -0.01 -0.64 3.70 84.86 0.31 -0.32 16 16 N -0.91 -49.24 11.24 21.65 0.24 -48.99 16 17 Si 0.93 42.03 28.61 68.60 1.96 43.99 16 18 H -0.29 -12.95 7.11 99.48 0.71 -12.24 16 19 H -0.29 -13.08 7.11 99.48 0.71 -12.37 16 20 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 21 C 0.11 4.78 5.78 44.99 0.26 5.04 16 22 C -0.19 -7.38 9.77 30.59 0.30 -7.08 16 23 C -0.21 -7.97 10.35 30.59 0.32 -7.65 16 24 H 0.05 1.39 8.14 -2.38 -0.02 1.37 16 25 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 26 H 0.04 1.32 8.14 -2.38 -0.02 1.30 16 27 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 28 H 0.08 2.59 5.82 -2.38 -0.01 2.58 16 29 H 0.07 1.67 8.14 -2.38 -0.02 1.65 16 30 H 0.10 2.02 8.14 -2.39 -0.02 2.00 16 31 H 0.10 1.99 7.57 -2.39 -0.02 1.98 16 32 H 0.08 3.74 4.70 -2.38 -0.01 3.72 16 33 H 0.08 2.47 7.54 -2.39 -0.02 2.45 16 34 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 35 H 0.04 1.62 7.86 -2.39 -0.02 1.60 16 36 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 37 H 0.02 1.05 7.74 -2.38 -0.02 1.03 16 38 H 0.09 4.52 4.82 -2.39 -0.01 4.51 16 39 H 0.25 13.41 8.32 -92.71 -0.77 12.63 16 40 H 0.10 3.77 7.22 -2.39 -0.02 3.76 16 41 H 0.07 3.24 6.55 -2.39 -0.02 3.23 16 42 H 0.10 3.40 8.14 -2.38 -0.02 3.38 16 43 H 0.10 3.22 8.14 -2.38 -0.02 3.21 16 44 H 0.05 2.38 8.14 -2.39 -0.02 2.36 16 Total: -1.00 -61.62 348.56 5.16 -56.46 By element: Atomic # 1 Polarization: 26.13 SS G_CDS: 0.97 Total: 27.10 kcal Atomic # 6 Polarization: -26.73 SS G_CDS: 5.89 Total: -20.84 kcal Atomic # 7 Polarization: -103.04 SS G_CDS: -3.67 Total: -106.71 kcal Atomic # 14 Polarization: 42.03 SS G_CDS: 1.96 Total: 43.99 kcal Total: -61.62 5.16 -56.46 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271117864.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.171 kcal (2) G-P(sol) polarization free energy of solvation -61.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.461 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds