Wall clock time and date at job start Mon Mar 30 2020 01:48:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42900 * 114.00184 * 2 1 4 4 H 1.08997 * 109.47060 * 30.00147 * 3 2 1 5 5 C 1.52994 * 109.47292 * 269.99942 * 3 2 1 6 6 C 1.53005 * 109.47307 * 149.99529 * 3 2 1 7 7 H 1.09004 * 109.46878 * 60.00102 * 6 3 2 8 8 C 1.52994 * 109.47282 * 300.00420 * 6 3 2 9 9 N 1.46891 * 109.47115 * 179.97438 * 6 3 2 10 10 C 1.46904 * 111.00126 * 205.00079 * 9 6 3 11 11 H 1.08998 * 109.46722 * 35.00548 * 10 9 6 12 12 C 1.52998 * 109.47123 * 155.00208 * 10 9 6 13 13 C 1.50704 * 109.47215 * 295.00238 * 12 10 9 14 14 H 1.08000 * 119.99607 * 0.02562 * 13 12 10 15 15 C 1.37872 * 119.99901 * 180.02562 * 13 12 10 16 16 N 1.31513 * 120.00231 * 359.97438 * 15 13 12 17 17 Si 1.86797 * 119.99967 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.47168 * 89.99697 * 17 15 13 19 19 H 1.48501 * 109.47536 * 209.99796 * 17 15 13 20 20 H 1.48500 * 109.47147 * 330.00166 * 17 15 13 21 21 C 1.50700 * 109.47349 * 275.00289 * 10 9 6 22 22 C 1.38231 * 119.99825 * 319.86570 * 21 10 9 23 23 C 1.38243 * 120.00070 * 180.02562 * 22 21 10 24 24 C 1.38235 * 119.99602 * 0.07188 * 23 22 21 25 25 C 1.38230 * 120.00326 * 359.97438 * 24 23 22 26 26 C 1.38234 * 120.00292 * 139.99708 * 21 10 9 27 27 H 1.08995 * 109.47010 * 300.00064 * 1 2 3 28 28 H 1.08997 * 109.46595 * 60.00071 * 1 2 3 29 29 H 1.09003 * 109.47009 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47128 * 59.99565 * 5 3 2 31 31 H 1.09005 * 109.47326 * 179.97438 * 5 3 2 32 32 H 1.09004 * 109.46905 * 299.99905 * 5 3 2 33 33 H 1.09005 * 109.47326 * 59.99740 * 8 6 3 34 34 H 1.08992 * 109.47458 * 179.97438 * 8 6 3 35 35 H 1.09003 * 109.47146 * 300.00161 * 8 6 3 36 36 H 1.00897 * 111.00352 * 328.96068 * 9 6 3 37 37 H 1.09007 * 109.47393 * 55.00270 * 12 10 9 38 38 H 1.09002 * 109.47408 * 175.00246 * 12 10 9 39 39 H 0.97003 * 120.00096 * 179.97438 * 16 15 13 40 40 H 1.08001 * 120.00367 * 0.10906 * 22 21 10 41 41 H 1.08000 * 119.99728 * 180.34119 * 23 22 21 42 42 H 1.08000 * 119.99297 * 179.97438 * 24 23 22 43 43 H 1.08001 * 120.00350 * 179.97438 * 25 24 23 44 44 H 1.08007 * 119.99474 * 359.97438 * 26 21 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3451 1.9993 0.5138 5 6 2.2177 1.7714 -1.4424 6 6 3.3589 1.2633 0.7214 7 1 4.0242 0.5693 0.2076 8 6 3.1515 0.7973 2.1638 9 7 3.9567 2.6051 0.7208 10 6 5.4189 2.5301 0.8404 11 1 5.7822 1.6502 0.3094 12 6 6.0454 3.7869 0.2333 13 6 5.7678 3.8216 -1.2475 14 1 5.2008 3.0268 -1.7093 15 6 6.2376 4.8678 -2.0127 16 7 6.9276 5.8359 -1.4502 17 14 5.8940 4.9104 -3.8483 18 1 4.6178 5.6280 -4.0965 19 1 7.0013 5.6151 -4.5430 20 1 5.7897 3.5220 -4.3647 21 6 5.7996 2.4316 2.2952 22 6 5.1256 3.1844 3.2385 23 6 5.4751 3.0945 4.5730 24 6 6.4996 2.2528 4.9639 25 6 7.1742 1.5007 4.0205 26 6 6.8245 1.5904 2.6861 27 1 -0.3633 0.5138 0.8899 28 1 -0.3632 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.2570 1.8014 -1.9563 31 1 2.6607 2.7673 -1.4424 32 1 2.8830 1.0774 -1.9562 33 1 2.7081 -0.1985 2.1638 34 1 4.1122 0.7669 2.6776 35 1 2.4861 1.4912 2.6776 36 1 3.6873 3.1206 -0.1036 37 1 5.6156 4.6711 0.7043 38 1 7.1224 3.7734 0.4008 39 1 7.2584 6.5718 -1.9887 40 1 4.3250 3.8419 2.9331 41 1 4.9448 3.6786 5.3106 42 1 6.7729 2.1829 6.0064 43 1 7.9749 0.8434 4.3258 44 1 7.3523 1.0035 1.9489 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000271506922.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:48:59 Heat of formation + Delta-G solvation = -33.256755 kcal Electronic energy + Delta-G solvation = -22363.959373 eV Core-core repulsion = 19280.732004 eV Total energy + Delta-G solvation = -3083.227368 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.24689 -38.33550 -36.18976 -33.46370 -32.10192 -30.38138 -29.72698 -29.53397 -27.66425 -26.54095 -24.54997 -22.96111 -22.12257 -21.78987 -20.00042 -19.56255 -16.82995 -16.39930 -16.04185 -15.88787 -15.05353 -14.72261 -14.63455 -14.49280 -14.10000 -13.51532 -13.28300 -12.95586 -12.78522 -12.63608 -12.43917 -12.12349 -11.98655 -11.80315 -11.59186 -11.31836 -11.15490 -11.04169 -10.97055 -10.65565 -10.58670 -10.49426 -10.30569 -10.17406 -9.57507 -9.44668 -9.17531 -8.46193 -8.37990 -7.99742 -7.78885 -6.07356 -4.11642 1.90288 1.95545 3.25821 3.33564 3.35548 3.79008 4.32802 4.40417 4.92498 5.00707 5.18417 5.30282 5.32483 5.37005 5.38206 5.42772 5.43162 5.50470 5.61656 5.69158 5.80131 5.91256 6.01179 6.05260 6.09455 6.11339 6.27220 6.31223 6.36866 6.48069 6.50313 6.58714 6.68589 6.75191 6.95689 7.01645 7.21899 7.32164 7.47358 7.56104 7.58990 7.90848 7.98725 8.19726 8.29110 8.94177 9.52928 11.03105 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.009855 B = 0.007855 C = 0.004663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2840.408037 B = 3563.828874 C = 6003.189099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.384 6.384 3 C 0.086 3.914 4 H 0.065 0.935 5 C -0.182 4.182 6 C 0.089 3.911 7 H 0.046 0.954 8 C -0.134 4.134 9 N -0.674 5.674 10 C 0.129 3.871 11 H 0.042 0.958 12 C 0.028 3.972 13 C -0.526 4.526 14 H 0.054 0.946 15 C 0.064 3.936 16 N -0.888 5.888 17 Si 0.887 3.113 18 H -0.280 1.280 19 H -0.286 1.286 20 H -0.274 1.274 21 C -0.047 4.047 22 C -0.087 4.087 23 C -0.130 4.130 24 C -0.139 4.139 25 C -0.127 4.127 26 C -0.125 4.125 27 H 0.039 0.961 28 H 0.038 0.962 29 H 0.081 0.919 30 H 0.053 0.947 31 H 0.080 0.920 32 H 0.062 0.938 33 H 0.050 0.950 34 H 0.058 0.942 35 H 0.052 0.948 36 H 0.358 0.642 37 H 0.028 0.972 38 H 0.024 0.976 39 H 0.262 0.738 40 H 0.127 0.873 41 H 0.112 0.888 42 H 0.110 0.890 43 H 0.112 0.888 44 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.318 -8.779 7.379 14.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.302 6.302 3 C 0.028 3.972 4 H 0.084 0.916 5 C -0.240 4.240 6 C -0.021 4.021 7 H 0.064 0.936 8 C -0.192 4.192 9 N -0.311 5.311 10 C 0.019 3.981 11 H 0.060 0.940 12 C -0.009 4.009 13 C -0.565 4.565 14 H 0.072 0.928 15 C -0.139 4.139 16 N -0.526 5.526 17 Si 0.715 3.285 18 H -0.206 1.206 19 H -0.212 1.212 20 H -0.199 1.199 21 C -0.048 4.048 22 C -0.105 4.105 23 C -0.149 4.149 24 C -0.157 4.157 25 C -0.145 4.145 26 C -0.144 4.144 27 H 0.058 0.942 28 H 0.056 0.944 29 H 0.099 0.901 30 H 0.072 0.928 31 H 0.099 0.901 32 H 0.081 0.919 33 H 0.069 0.931 34 H 0.077 0.923 35 H 0.071 0.929 36 H 0.183 0.817 37 H 0.047 0.953 38 H 0.042 0.958 39 H 0.071 0.929 40 H 0.145 0.855 41 H 0.130 0.870 42 H 0.128 0.872 43 H 0.130 0.870 44 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -8.226 -8.672 7.976 14.369 hybrid contribution -0.022 0.053 -1.962 1.963 sum -8.248 -8.619 6.013 13.359 Atomic orbital electron populations 1.22724 0.81717 1.02168 0.99766 1.87877 1.19062 1.28216 1.95075 1.22257 0.95316 0.84109 0.95507 0.91649 1.22388 1.02018 1.02913 0.96663 1.21507 0.93118 0.91655 0.95831 0.93631 1.21789 1.01854 0.99773 0.95756 1.60577 1.09333 1.13645 1.47594 1.20707 0.86789 1.00786 0.89811 0.93987 1.19266 0.96058 0.90813 0.94789 1.21135 1.35118 1.07136 0.93080 0.92795 1.24963 0.95005 0.95584 0.98322 1.69962 1.36084 1.10764 1.35795 0.86668 0.77995 0.78169 0.85651 1.20566 1.21188 1.19902 1.20160 0.94171 0.94157 0.96335 1.21023 0.99236 0.98432 0.91797 1.21109 0.98041 0.99426 0.96283 1.20952 0.97617 0.98383 0.98721 1.20956 1.00040 1.00182 0.93329 1.21036 0.98034 0.99622 0.95705 0.94206 0.94352 0.90092 0.92776 0.90142 0.91852 0.93055 0.92293 0.92911 0.81734 0.95331 0.95798 0.92871 0.85486 0.86989 0.87196 0.87023 0.86768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 10.82 101.05 1.09 1.45 16 2 O -0.38 -5.51 9.67 -35.23 -0.34 -5.85 16 3 C 0.09 1.27 2.44 -26.73 -0.07 1.20 16 4 H 0.07 0.92 7.79 -51.93 -0.40 0.52 16 5 C -0.18 -2.72 9.29 37.15 0.35 -2.37 16 6 C 0.09 1.46 2.44 -67.72 -0.17 1.29 16 7 H 0.05 0.82 7.43 -51.93 -0.39 0.43 16 8 C -0.13 -2.04 8.72 37.15 0.32 -1.72 16 9 N -0.67 -12.28 5.42 -100.96 -0.55 -12.83 16 10 C 0.13 2.59 2.19 -68.86 -0.15 2.44 16 11 H 0.04 0.88 7.29 -51.93 -0.38 0.51 16 12 C 0.03 0.69 4.55 -27.88 -0.13 0.56 16 13 C -0.53 -13.84 8.12 -34.44 -0.28 -14.12 16 14 H 0.05 1.37 7.49 -52.49 -0.39 0.98 16 15 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 16 N -0.89 -25.77 13.29 55.43 0.74 -25.04 16 17 Si 0.89 20.85 29.54 -169.99 -5.02 15.83 16 18 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 19 H -0.29 -6.76 7.11 56.52 0.40 -6.35 16 20 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 21 C -0.05 -0.87 2.93 -104.63 -0.31 -1.18 16 22 C -0.09 -1.51 8.63 -39.58 -0.34 -1.85 16 23 C -0.13 -1.99 10.05 -39.58 -0.40 -2.39 16 24 C -0.14 -2.00 10.05 -39.59 -0.40 -2.40 16 25 C -0.13 -1.91 10.05 -39.59 -0.40 -2.30 16 26 C -0.13 -2.14 9.65 -39.58 -0.38 -2.52 16 27 H 0.04 0.39 8.08 -51.93 -0.42 -0.03 16 28 H 0.04 0.38 7.87 -51.93 -0.41 -0.03 16 29 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.05 0.71 7.87 -51.93 -0.41 0.30 16 31 H 0.08 1.30 6.21 -51.93 -0.32 0.97 16 32 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 33 H 0.05 0.74 7.68 -51.93 -0.40 0.34 16 34 H 0.06 0.96 5.94 -51.93 -0.31 0.65 16 35 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.36 6.95 4.64 -39.29 -0.18 6.76 16 37 H 0.03 0.76 8.14 -51.92 -0.42 0.34 16 38 H 0.02 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.26 7.21 8.31 -40.82 -0.34 6.88 16 40 H 0.13 2.26 7.72 -52.49 -0.41 1.85 16 41 H 0.11 1.44 8.06 -52.49 -0.42 1.02 16 42 H 0.11 1.30 8.06 -52.49 -0.42 0.87 16 43 H 0.11 1.40 8.06 -52.49 -0.42 0.98 16 44 H 0.11 1.85 8.04 -52.48 -0.42 1.43 16 LS Contribution 351.87 15.07 5.30 5.30 Total: -1.00 -28.42 351.87 -8.57 -36.99 By element: Atomic # 1 Polarization: 15.21 SS G_CDS: -7.36 Total: 7.86 kcal Atomic # 6 Polarization: -20.92 SS G_CDS: -1.35 Total: -22.26 kcal Atomic # 7 Polarization: -38.05 SS G_CDS: 0.19 Total: -37.87 kcal Atomic # 8 Polarization: -5.51 SS G_CDS: -0.34 Total: -5.85 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.83 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -28.42 -8.57 -36.99 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271506922.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.732 kcal (2) G-P(sol) polarization free energy of solvation -28.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.989 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds