Wall clock time and date at job start Mon Mar 30 2020 01:49:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42904 * 114.00274 * 2 1 4 4 H 1.09000 * 109.46865 * 30.00419 * 3 2 1 5 5 C 1.52999 * 109.47495 * 270.00545 * 3 2 1 6 6 C 1.52999 * 109.47221 * 149.99853 * 3 2 1 7 7 H 1.08996 * 109.46929 * 184.99703 * 6 3 2 8 8 C 1.52997 * 109.47317 * 305.00599 * 6 3 2 9 9 N 1.46906 * 109.46507 * 65.00562 * 6 3 2 10 10 C 1.46904 * 110.99716 * 154.99875 * 9 6 3 11 11 H 1.09001 * 109.46947 * 35.00190 * 10 9 6 12 12 C 1.53003 * 109.46880 * 154.99719 * 10 9 6 13 13 C 1.50702 * 109.46970 * 294.99760 * 12 10 9 14 14 H 1.07995 * 120.00247 * 0.02562 * 13 12 10 15 15 C 1.37878 * 119.99567 * 180.02562 * 13 12 10 16 16 N 1.31515 * 120.00312 * 359.97438 * 15 13 12 17 17 Si 1.86796 * 119.99991 * 180.02562 * 15 13 12 18 18 H 1.48508 * 109.46932 * 359.97438 * 17 15 13 19 19 H 1.48498 * 109.47334 * 119.99913 * 17 15 13 20 20 H 1.48498 * 109.47443 * 239.99901 * 17 15 13 21 21 C 1.50693 * 109.46942 * 274.99866 * 10 9 6 22 22 C 1.38238 * 120.00205 * 319.72620 * 21 10 9 23 23 C 1.38233 * 120.00064 * 179.81440 * 22 21 10 24 24 C 1.38241 * 119.99841 * 0.39347 * 23 22 21 25 25 C 1.38230 * 120.00099 * 359.86232 * 24 23 22 26 26 C 1.38236 * 120.00039 * 359.95152 * 25 24 23 27 27 H 1.09003 * 109.47295 * 59.99233 * 1 2 3 28 28 H 1.08995 * 109.46977 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.46822 * 299.99544 * 1 2 3 30 30 H 1.09000 * 109.46961 * 299.99816 * 5 3 2 31 31 H 1.09001 * 109.46954 * 59.99571 * 5 3 2 32 32 H 1.08996 * 109.47443 * 179.97438 * 5 3 2 33 33 H 1.09002 * 109.47153 * 299.99641 * 8 6 3 34 34 H 1.09001 * 109.46832 * 179.97438 * 8 6 3 35 35 H 1.09004 * 109.47261 * 59.99813 * 8 6 3 36 36 H 1.00900 * 110.99634 * 278.94600 * 9 6 3 37 37 H 1.08996 * 109.46699 * 55.00278 * 12 10 9 38 38 H 1.09005 * 109.46862 * 175.00287 * 12 10 9 39 39 H 0.97002 * 120.00246 * 180.02562 * 16 15 13 40 40 H 1.07995 * 119.99406 * 359.97438 * 22 21 10 41 41 H 1.08003 * 120.00093 * 180.22914 * 23 22 21 42 42 H 1.08001 * 119.99589 * 179.83830 * 24 23 22 43 43 H 1.08004 * 120.00224 * 179.97438 * 25 24 23 44 44 H 1.08003 * 120.00072 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3451 1.9994 0.5139 5 6 2.2177 1.7715 -1.4425 6 6 3.3590 1.2632 0.7213 7 1 3.7609 2.2733 0.7994 8 6 3.1697 0.6796 2.1228 9 7 4.2938 0.4216 -0.0376 10 6 5.6861 0.7997 0.2393 11 1 5.7786 1.1081 1.2806 12 6 6.6013 -0.3985 -0.0210 13 6 6.2833 -1.4962 0.9615 14 1 5.5060 -1.3536 1.6975 15 6 6.9849 -2.6824 0.9206 16 7 7.9312 -2.8562 0.0239 17 14 6.5904 -4.0433 2.1378 18 1 5.4929 -3.6016 3.0355 19 1 6.1673 -5.2604 1.3997 20 1 7.7977 -4.3495 2.9464 21 6 6.0849 1.9411 -0.6601 22 6 5.6784 1.9548 -1.9813 23 6 6.0410 3.0038 -2.8052 24 6 6.8170 4.0352 -2.3102 25 6 7.2280 4.0189 -0.9905 26 6 6.8621 2.9718 -0.1655 27 1 -0.3634 0.5140 -0.8899 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 2.8829 1.0776 -1.9564 31 1 1.2568 1.8016 -1.9562 32 1 2.6606 2.7674 -1.4424 33 1 2.4761 1.3041 2.6859 34 1 4.1307 0.6491 2.6365 35 1 2.7677 -0.3306 2.0446 36 1 4.1392 -0.5564 0.1568 37 1 6.4434 -0.7625 -1.0362 38 1 7.6411 -0.0941 0.0983 39 1 8.4245 -3.6909 -0.0051 40 1 5.0753 1.1471 -2.3689 41 1 5.7203 3.0163 -3.8365 42 1 7.1025 4.8534 -2.9547 43 1 7.8346 4.8245 -0.6038 44 1 7.1829 2.9593 0.8658 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000271506924.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:04 Heat of formation + Delta-G solvation = -35.312744 kcal Electronic energy + Delta-G solvation = -22493.043891 eV Core-core repulsion = 19409.727368 eV Total energy + Delta-G solvation = -3083.316523 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.15158 -38.22860 -36.06915 -33.37880 -32.04599 -30.38947 -30.10543 -28.93581 -27.55068 -26.48478 -24.44797 -23.08915 -22.07476 -21.81085 -20.01394 -19.52757 -16.67653 -16.34460 -16.02143 -15.43590 -14.90751 -14.82752 -14.61128 -14.44399 -13.88983 -13.59999 -13.22938 -12.83894 -12.70644 -12.59664 -12.25034 -12.12014 -12.07813 -11.97838 -11.51823 -11.23724 -11.07962 -11.03315 -10.83986 -10.63572 -10.56967 -10.41040 -10.32203 -10.09424 -9.52582 -9.35791 -9.11069 -8.42074 -8.36125 -8.02917 -7.59774 -6.01008 -4.04217 1.89704 1.95276 3.30826 3.38945 3.42066 4.04366 4.32990 4.45954 4.84838 5.08706 5.31840 5.34183 5.36584 5.38099 5.42635 5.47240 5.49103 5.57529 5.69035 5.73608 5.78037 5.89288 5.98835 6.04996 6.09151 6.12170 6.21842 6.26910 6.42220 6.49072 6.59000 6.70094 6.74729 6.79470 6.95239 7.02110 7.26092 7.44649 7.53762 7.60732 7.65934 7.97844 8.07531 8.33023 8.38909 9.01719 9.60082 11.09672 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.010631 B = 0.007612 C = 0.004966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2633.103447 B = 3677.552442 C = 5637.098467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.372 6.372 3 C 0.099 3.901 4 H 0.048 0.952 5 C -0.161 4.161 6 C 0.089 3.911 7 H 0.078 0.922 8 C -0.177 4.177 9 N -0.666 5.666 10 C 0.126 3.874 11 H 0.040 0.960 12 C 0.029 3.971 13 C -0.521 4.521 14 H 0.055 0.945 15 C 0.062 3.938 16 N -0.890 5.890 17 Si 0.889 3.111 18 H -0.273 1.273 19 H -0.284 1.284 20 H -0.286 1.286 21 C -0.052 4.052 22 C -0.086 4.086 23 C -0.131 4.131 24 C -0.139 4.139 25 C -0.128 4.128 26 C -0.125 4.125 27 H 0.035 0.965 28 H 0.080 0.920 29 H 0.034 0.966 30 H 0.084 0.916 31 H 0.039 0.961 32 H 0.056 0.944 33 H 0.044 0.956 34 H 0.057 0.943 35 H 0.066 0.934 36 H 0.364 0.636 37 H 0.028 0.972 38 H 0.021 0.979 39 H 0.260 0.740 40 H 0.129 0.871 41 H 0.112 0.888 42 H 0.110 0.890 43 H 0.111 0.889 44 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.219 11.717 -1.465 15.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.291 6.291 3 C 0.041 3.959 4 H 0.066 0.934 5 C -0.219 4.219 6 C -0.022 4.022 7 H 0.096 0.904 8 C -0.236 4.236 9 N -0.299 5.299 10 C 0.016 3.984 11 H 0.058 0.942 12 C -0.008 4.008 13 C -0.560 4.560 14 H 0.074 0.926 15 C -0.140 4.140 16 N -0.529 5.529 17 Si 0.717 3.283 18 H -0.198 1.198 19 H -0.210 1.210 20 H -0.212 1.212 21 C -0.052 4.052 22 C -0.104 4.104 23 C -0.149 4.149 24 C -0.157 4.157 25 C -0.146 4.146 26 C -0.144 4.144 27 H 0.054 0.946 28 H 0.099 0.901 29 H 0.052 0.948 30 H 0.103 0.897 31 H 0.058 0.942 32 H 0.075 0.925 33 H 0.064 0.936 34 H 0.076 0.924 35 H 0.085 0.915 36 H 0.187 0.813 37 H 0.046 0.954 38 H 0.039 0.961 39 H 0.070 0.930 40 H 0.147 0.853 41 H 0.130 0.870 42 H 0.128 0.872 43 H 0.129 0.871 44 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -10.019 11.773 -2.095 15.600 hybrid contribution -0.162 -0.866 1.564 1.795 sum -10.181 10.907 -0.531 14.930 Atomic orbital electron populations 1.22704 0.82466 1.02170 0.99131 1.88011 1.18233 1.27894 1.94951 1.22191 0.93717 0.83927 0.96039 0.93351 1.22127 1.01080 1.01850 0.96800 1.21611 0.91873 0.97866 0.90880 0.90434 1.22414 1.01593 1.02000 0.97604 1.60506 1.02021 1.09634 1.57788 1.20657 0.89174 0.94368 0.94205 0.94200 1.19244 0.93717 0.89955 0.97903 1.21184 1.19182 0.99346 1.16248 0.92648 1.24966 0.95044 0.98410 0.95577 1.69977 1.22759 1.25624 1.34514 0.86587 0.78140 0.82283 0.81289 1.19776 1.20991 1.21182 1.20246 0.95252 0.94642 0.95095 1.21059 0.98518 0.97685 0.93129 1.21120 0.99378 0.95096 0.99327 1.20956 1.00101 0.98987 0.95638 1.20957 1.00880 0.98583 0.94218 1.21048 0.99241 0.94349 0.99722 0.94649 0.90130 0.94789 0.89743 0.94225 0.92494 0.93647 0.92370 0.91509 0.81269 0.95383 0.96059 0.93031 0.85344 0.87005 0.87231 0.87074 0.86809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 10.82 101.05 1.09 1.46 16 2 O -0.37 -5.62 9.42 -35.23 -0.33 -5.95 16 3 C 0.10 1.39 2.60 -26.73 -0.07 1.32 16 4 H 0.05 0.60 7.79 -51.93 -0.40 0.20 16 5 C -0.16 -2.18 9.32 37.16 0.35 -1.84 16 6 C 0.09 1.39 2.30 -67.71 -0.16 1.23 16 7 H 0.08 1.21 7.63 -51.93 -0.40 0.81 16 8 C -0.18 -2.76 8.95 37.16 0.33 -2.43 16 9 N -0.67 -12.20 4.28 -100.95 -0.43 -12.63 16 10 C 0.13 2.51 2.00 -68.86 -0.14 2.38 16 11 H 0.04 0.82 6.97 -51.93 -0.36 0.46 16 12 C 0.03 0.73 4.55 -27.88 -0.13 0.60 16 13 C -0.52 -14.01 8.12 -34.44 -0.28 -14.29 16 14 H 0.06 1.45 7.49 -52.49 -0.39 1.06 16 15 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 16 N -0.89 -26.34 13.29 55.43 0.74 -25.61 16 17 Si 0.89 21.43 29.54 -169.99 -5.02 16.41 16 18 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 19 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 20 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 21 C -0.05 -0.94 4.61 -104.62 -0.48 -1.42 16 22 C -0.09 -1.48 9.32 -39.58 -0.37 -1.85 16 23 C -0.13 -1.98 10.05 -39.58 -0.40 -2.38 16 24 C -0.14 -1.98 10.05 -39.58 -0.40 -2.38 16 25 C -0.13 -1.90 10.05 -39.58 -0.40 -2.30 16 26 C -0.13 -2.10 9.67 -39.58 -0.38 -2.48 16 27 H 0.03 0.36 7.87 -51.93 -0.41 -0.05 16 28 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 29 H 0.03 0.34 8.08 -51.93 -0.42 -0.08 16 30 H 0.08 1.31 6.84 -51.93 -0.36 0.95 16 31 H 0.04 0.48 7.87 -51.93 -0.41 0.07 16 32 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 33 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.06 0.98 7.43 -51.93 -0.39 0.59 16 35 H 0.07 1.12 7.55 -51.93 -0.39 0.73 16 36 H 0.36 7.61 6.95 -39.29 -0.27 7.33 16 37 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 40 H 0.13 2.28 7.09 -52.49 -0.37 1.91 16 41 H 0.11 1.43 8.06 -52.48 -0.42 1.01 16 42 H 0.11 1.28 8.06 -52.49 -0.42 0.86 16 43 H 0.11 1.37 8.06 -52.48 -0.42 0.95 16 44 H 0.11 1.81 8.04 -52.48 -0.42 1.39 16 LS Contribution 356.49 15.07 5.37 5.37 Total: -1.00 -28.84 356.49 -8.71 -37.55 By element: Atomic # 1 Polarization: 15.12 SS G_CDS: -7.51 Total: 7.61 kcal Atomic # 6 Polarization: -21.22 SS G_CDS: -1.52 Total: -22.75 kcal Atomic # 7 Polarization: -38.54 SS G_CDS: 0.30 Total: -38.24 kcal Atomic # 8 Polarization: -5.62 SS G_CDS: -0.33 Total: -5.95 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -28.84 -8.71 -37.55 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271506924.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.235 kcal (2) G-P(sol) polarization free energy of solvation -28.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.548 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds