Wall clock time and date at job start Mon Mar 30 2020 01:49:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42904 * 114.00274 * 2 1 4 4 H 1.09000 * 109.46865 * 30.00419 * 3 2 1 5 5 C 1.52999 * 109.47495 * 270.00545 * 3 2 1 6 6 C 1.52999 * 109.47221 * 149.99853 * 3 2 1 7 7 H 1.08996 * 109.46929 * 184.99703 * 6 3 2 8 8 C 1.52997 * 109.47317 * 305.00599 * 6 3 2 9 9 N 1.46906 * 109.46507 * 65.00562 * 6 3 2 10 10 C 1.46904 * 110.99716 * 154.99875 * 9 6 3 11 11 H 1.09001 * 109.46947 * 35.00190 * 10 9 6 12 12 C 1.53003 * 109.46880 * 154.99719 * 10 9 6 13 13 C 1.50702 * 109.46970 * 294.99760 * 12 10 9 14 14 H 1.07995 * 120.00247 * 0.02562 * 13 12 10 15 15 C 1.37878 * 119.99567 * 180.02562 * 13 12 10 16 16 N 1.31515 * 120.00312 * 359.97438 * 15 13 12 17 17 Si 1.86796 * 119.99991 * 180.02562 * 15 13 12 18 18 H 1.48508 * 109.46932 * 359.97438 * 17 15 13 19 19 H 1.48498 * 109.47334 * 119.99913 * 17 15 13 20 20 H 1.48498 * 109.47443 * 239.99901 * 17 15 13 21 21 C 1.50693 * 109.46942 * 274.99866 * 10 9 6 22 22 C 1.38238 * 120.00205 * 319.72620 * 21 10 9 23 23 C 1.38233 * 120.00064 * 179.81440 * 22 21 10 24 24 C 1.38241 * 119.99841 * 0.39347 * 23 22 21 25 25 C 1.38230 * 120.00099 * 359.86232 * 24 23 22 26 26 C 1.38236 * 120.00039 * 359.95152 * 25 24 23 27 27 H 1.09003 * 109.47295 * 59.99233 * 1 2 3 28 28 H 1.08995 * 109.46977 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.46822 * 299.99544 * 1 2 3 30 30 H 1.09000 * 109.46961 * 299.99816 * 5 3 2 31 31 H 1.09001 * 109.46954 * 59.99571 * 5 3 2 32 32 H 1.08996 * 109.47443 * 179.97438 * 5 3 2 33 33 H 1.09002 * 109.47153 * 299.99641 * 8 6 3 34 34 H 1.09001 * 109.46832 * 179.97438 * 8 6 3 35 35 H 1.09004 * 109.47261 * 59.99813 * 8 6 3 36 36 H 1.00900 * 110.99634 * 278.94600 * 9 6 3 37 37 H 1.08996 * 109.46699 * 55.00278 * 12 10 9 38 38 H 1.09005 * 109.46862 * 175.00287 * 12 10 9 39 39 H 0.97002 * 120.00246 * 180.02562 * 16 15 13 40 40 H 1.07995 * 119.99406 * 359.97438 * 22 21 10 41 41 H 1.08003 * 120.00093 * 180.22914 * 23 22 21 42 42 H 1.08001 * 119.99589 * 179.83830 * 24 23 22 43 43 H 1.08004 * 120.00224 * 179.97438 * 25 24 23 44 44 H 1.08003 * 120.00072 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3451 1.9994 0.5139 5 6 2.2177 1.7715 -1.4425 6 6 3.3590 1.2632 0.7213 7 1 3.7609 2.2733 0.7994 8 6 3.1697 0.6796 2.1228 9 7 4.2938 0.4216 -0.0376 10 6 5.6861 0.7997 0.2393 11 1 5.7786 1.1081 1.2806 12 6 6.6013 -0.3985 -0.0210 13 6 6.2833 -1.4962 0.9615 14 1 5.5060 -1.3536 1.6975 15 6 6.9849 -2.6824 0.9206 16 7 7.9312 -2.8562 0.0239 17 14 6.5904 -4.0433 2.1378 18 1 5.4929 -3.6016 3.0355 19 1 6.1673 -5.2604 1.3997 20 1 7.7977 -4.3495 2.9464 21 6 6.0849 1.9411 -0.6601 22 6 5.6784 1.9548 -1.9813 23 6 6.0410 3.0038 -2.8052 24 6 6.8170 4.0352 -2.3102 25 6 7.2280 4.0189 -0.9905 26 6 6.8621 2.9718 -0.1655 27 1 -0.3634 0.5140 -0.8899 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 2.8829 1.0776 -1.9564 31 1 1.2568 1.8016 -1.9562 32 1 2.6606 2.7674 -1.4424 33 1 2.4761 1.3041 2.6859 34 1 4.1307 0.6491 2.6365 35 1 2.7677 -0.3306 2.0446 36 1 4.1392 -0.5564 0.1568 37 1 6.4434 -0.7625 -1.0362 38 1 7.6411 -0.0941 0.0983 39 1 8.4245 -3.6909 -0.0051 40 1 5.0753 1.1471 -2.3689 41 1 5.7203 3.0163 -3.8365 42 1 7.1025 4.8534 -2.9547 43 1 7.8346 4.8245 -0.6038 44 1 7.1829 2.9593 0.8658 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000271506924.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:03 Heat of formation + Delta-G solvation = -51.169747 kcal Electronic energy + Delta-G solvation = -22493.731502 eV Core-core repulsion = 19409.727368 eV Total energy + Delta-G solvation = -3084.004134 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.47389 -39.37588 -37.45004 -35.16946 -33.71245 -31.62825 -31.29375 -30.44109 -29.22310 -27.41287 -26.23847 -24.27453 -23.64192 -23.17086 -21.28090 -20.97830 -18.55340 -17.66015 -17.33843 -16.84278 -16.31070 -16.24455 -15.92539 -15.77002 -15.25162 -14.94656 -14.62386 -14.16783 -14.06340 -13.92735 -13.67246 -13.59581 -13.41379 -13.25200 -12.93741 -12.88663 -12.58544 -12.44756 -12.32798 -12.27400 -12.04267 -11.81536 -11.69891 -11.46930 -11.23625 -11.10372 -10.57297 -10.40294 -9.64078 -9.38473 -9.07048 -8.17928 -6.28089 0.63380 0.70087 1.38349 1.39757 1.51522 2.40577 3.01721 3.07172 3.14377 3.47683 3.91955 4.12076 4.16634 4.22988 4.31280 4.37610 4.45145 4.47703 4.56683 4.59567 4.63766 4.70962 4.81096 4.86014 4.89160 4.90522 4.92552 4.99520 5.01824 5.17672 5.26515 5.34212 5.38818 5.46744 5.55756 5.62205 5.72121 5.77646 5.84620 5.95128 6.20492 6.31048 6.41257 6.58018 6.72701 6.86897 7.40443 8.93645 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.010631 B = 0.007612 C = 0.004966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2633.103447 B = 3677.552442 C = 5637.098467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.401 6.401 3 C 0.103 3.897 4 H 0.073 0.927 5 C -0.154 4.154 6 C 0.088 3.912 7 H 0.080 0.920 8 C -0.170 4.170 9 N -0.661 5.661 10 C 0.143 3.857 11 H 0.030 0.970 12 C 0.042 3.958 13 C -0.527 4.527 14 H 0.060 0.940 15 C 0.006 3.994 16 N -0.930 5.930 17 Si 0.958 3.042 18 H -0.263 1.263 19 H -0.280 1.280 20 H -0.281 1.281 21 C -0.076 4.076 22 C -0.099 4.099 23 C -0.131 4.131 24 C -0.131 4.131 25 C -0.126 4.126 26 C -0.140 4.140 27 H 0.047 0.953 28 H 0.086 0.914 29 H 0.049 0.951 30 H 0.059 0.941 31 H 0.055 0.945 32 H 0.060 0.940 33 H 0.071 0.929 34 H 0.039 0.961 35 H 0.052 0.948 36 H 0.347 0.653 37 H -0.004 1.004 38 H -0.013 1.013 39 H 0.262 0.738 40 H 0.113 0.887 41 H 0.137 0.863 42 H 0.146 0.854 43 H 0.141 0.859 44 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.568 13.509 -1.301 17.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.321 6.321 3 C 0.045 3.955 4 H 0.091 0.909 5 C -0.211 4.211 6 C -0.022 4.022 7 H 0.099 0.901 8 C -0.229 4.229 9 N -0.293 5.293 10 C 0.033 3.967 11 H 0.048 0.952 12 C 0.005 3.995 13 C -0.565 4.565 14 H 0.078 0.922 15 C -0.192 4.192 16 N -0.571 5.571 17 Si 0.783 3.217 18 H -0.187 1.187 19 H -0.206 1.206 20 H -0.207 1.207 21 C -0.077 4.077 22 C -0.117 4.117 23 C -0.149 4.149 24 C -0.149 4.149 25 C -0.144 4.144 26 C -0.158 4.158 27 H 0.065 0.935 28 H 0.105 0.895 29 H 0.067 0.933 30 H 0.078 0.922 31 H 0.074 0.926 32 H 0.079 0.921 33 H 0.090 0.910 34 H 0.058 0.942 35 H 0.071 0.929 36 H 0.167 0.833 37 H 0.014 0.986 38 H 0.006 0.994 39 H 0.071 0.929 40 H 0.131 0.869 41 H 0.154 0.846 42 H 0.163 0.837 43 H 0.159 0.841 44 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -11.387 13.590 -1.926 17.834 hybrid contribution 0.249 -1.354 1.463 2.009 sum -11.138 12.236 -0.463 16.552 Atomic orbital electron populations 1.22887 0.80543 1.03108 1.00419 1.87979 1.20452 1.28503 1.95133 1.22158 0.92904 0.84254 0.96197 0.90883 1.22033 1.01346 1.01251 0.96494 1.21711 0.92358 0.97226 0.90931 0.90142 1.22320 1.01102 1.01733 0.97697 1.60535 1.01526 1.08745 1.58470 1.20281 0.89223 0.92998 0.94218 0.95204 1.19002 0.93030 0.91797 0.95703 1.21514 1.18809 0.99891 1.16270 0.92201 1.25848 0.94908 1.01059 0.97419 1.70111 1.24051 1.26428 1.36468 0.85502 0.78160 0.79028 0.78968 1.18725 1.20610 1.20722 1.20113 0.97230 0.94889 0.95437 1.21014 0.99152 0.98389 0.93135 1.21411 0.98954 0.94382 1.00184 1.21387 0.98490 0.99267 0.95768 1.21310 1.00379 0.98384 0.94298 1.21197 0.99348 0.94889 1.00393 0.93454 0.89520 0.93291 0.92234 0.92603 0.92106 0.90964 0.94231 0.92918 0.83289 0.98552 0.99420 0.92935 0.86851 0.84555 0.83667 0.84093 0.86732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.55 10.82 113.37 1.23 1.78 16 2 O -0.40 -11.74 9.42 -148.98 -1.40 -13.14 16 3 C 0.10 2.74 2.60 30.59 0.08 2.82 16 4 H 0.07 1.60 7.79 -2.39 -0.02 1.58 16 5 C -0.15 -4.00 9.32 71.98 0.67 -3.33 16 6 C 0.09 2.74 2.30 44.91 0.10 2.84 16 7 H 0.08 2.46 7.63 -2.39 -0.02 2.44 16 8 C -0.17 -5.22 8.95 71.98 0.64 -4.58 16 9 N -0.66 -25.18 4.28 -473.30 -2.02 -27.21 16 10 C 0.14 6.00 2.00 44.17 0.09 6.09 16 11 H 0.03 1.29 6.97 -2.39 -0.02 1.27 16 12 C 0.04 2.24 4.55 29.85 0.14 2.37 16 13 C -0.53 -29.43 8.12 25.60 0.21 -29.22 16 14 H 0.06 3.22 7.49 -2.91 -0.02 3.20 16 15 C 0.01 0.33 5.46 84.65 0.46 0.79 16 16 N -0.93 -57.05 13.29 21.45 0.28 -56.76 16 17 Si 0.96 44.82 29.54 68.60 2.03 46.84 16 18 H -0.26 -11.78 7.11 99.48 0.71 -11.07 16 19 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 20 H -0.28 -12.90 7.11 99.48 0.71 -12.20 16 21 C -0.08 -2.85 4.61 -19.87 -0.09 -2.94 16 22 C -0.10 -3.44 9.32 22.27 0.21 -3.23 16 23 C -0.13 -3.74 10.05 22.27 0.22 -3.51 16 24 C -0.13 -3.34 10.05 22.27 0.22 -3.11 16 25 C -0.13 -3.43 10.05 22.27 0.22 -3.21 16 26 C -0.14 -4.66 9.67 22.27 0.22 -4.45 16 27 H 0.05 0.86 7.87 -2.39 -0.02 0.84 16 28 H 0.09 1.65 8.14 -2.39 -0.02 1.64 16 29 H 0.05 0.86 8.08 -2.39 -0.02 0.84 16 30 H 0.06 1.86 6.84 -2.39 -0.02 1.84 16 31 H 0.05 1.25 7.87 -2.39 -0.02 1.23 16 32 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 33 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 34 H 0.04 1.34 7.43 -2.39 -0.02 1.32 16 35 H 0.05 1.76 7.55 -2.38 -0.02 1.74 16 36 H 0.35 15.19 6.95 -89.69 -0.62 14.57 16 37 H 0.00 -0.23 8.14 -2.39 -0.02 -0.25 16 38 H -0.01 -0.74 8.14 -2.38 -0.02 -0.76 16 39 H 0.26 15.13 8.31 -92.71 -0.77 14.36 16 40 H 0.11 4.23 7.09 -2.91 -0.02 4.21 16 41 H 0.14 3.15 8.06 -2.91 -0.02 3.12 16 42 H 0.15 2.69 8.06 -2.91 -0.02 2.66 16 43 H 0.14 2.97 8.06 -2.91 -0.02 2.95 16 44 H 0.11 3.69 8.04 -2.91 -0.02 3.66 16 Total: -1.00 -64.70 356.49 3.84 -60.86 By element: Atomic # 1 Polarization: 29.97 SS G_CDS: 0.33 Total: 30.30 kcal Atomic # 6 Polarization: -45.51 SS G_CDS: 4.62 Total: -40.89 kcal Atomic # 7 Polarization: -82.23 SS G_CDS: -1.74 Total: -83.97 kcal Atomic # 8 Polarization: -11.74 SS G_CDS: -1.40 Total: -13.14 kcal Atomic # 14 Polarization: 44.82 SS G_CDS: 2.03 Total: 46.84 kcal Total: -64.70 3.84 -60.86 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271506924.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.695 kcal (2) G-P(sol) polarization free energy of solvation -64.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.865 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds