Wall clock time and date at job start Mon Mar 30 2020 02:05:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46904 * 109.47290 * 2 1 4 4 C 1.46902 * 111.00044 * 163.13984 * 3 2 1 5 5 C 1.50689 * 109.46949 * 293.95394 * 4 3 2 6 6 H 1.08003 * 120.00775 * 0.02562 * 5 4 3 7 7 C 1.37879 * 120.00127 * 180.02562 * 5 4 3 8 8 N 1.31524 * 119.99612 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 120.00435 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.47129 * 0.02562 * 9 7 5 11 11 H 1.48502 * 109.46949 * 119.99870 * 9 7 5 12 12 H 1.48501 * 109.47017 * 240.00162 * 9 7 5 13 13 C 1.46902 * 110.99890 * 287.09310 * 3 2 1 14 14 C 1.52999 * 109.46703 * 85.70108 * 13 3 2 15 15 H 1.09000 * 109.47573 * 304.59955 * 14 13 3 16 16 C 1.52997 * 109.47427 * 64.60301 * 14 13 3 17 17 C 1.50703 * 109.46756 * 184.59886 * 14 13 3 18 18 C 1.38264 * 119.94670 * 299.72837 * 17 14 13 19 19 C 1.38150 * 120.05294 * 179.72577 * 18 17 14 20 20 C 1.38727 * 119.94515 * 0.54885 * 19 18 17 21 21 O 1.35906 * 120.05578 * 179.74977 * 20 19 18 22 22 C 1.42900 * 116.99745 * 359.97438 * 21 20 19 23 23 C 1.38733 * 119.89059 * 359.72401 * 20 19 18 24 24 C 1.38141 * 119.94270 * 0.02562 * 23 20 19 25 25 H 1.09005 * 109.47139 * 196.67313 * 1 2 3 26 26 H 1.09000 * 109.46966 * 316.67621 * 1 2 3 27 27 H 1.09003 * 109.47467 * 76.67546 * 1 2 3 28 28 H 1.09000 * 109.47126 * 239.99983 * 2 1 3 29 29 H 1.09000 * 109.47246 * 119.99907 * 2 1 3 30 30 H 1.09000 * 109.47181 * 53.95517 * 4 3 2 31 31 H 1.09000 * 109.46591 * 173.95179 * 4 3 2 32 32 H 0.97003 * 119.99537 * 179.97438 * 8 7 5 33 33 H 1.08997 * 109.47043 * 205.70210 * 13 3 2 34 34 H 1.09004 * 109.47276 * 325.70687 * 13 3 2 35 35 H 1.09001 * 109.47087 * 299.99697 * 16 14 13 36 36 H 1.09000 * 109.47026 * 59.99319 * 16 14 13 37 37 H 1.08995 * 109.47614 * 179.97438 * 16 14 13 38 38 H 1.07994 * 119.97255 * 359.97438 * 18 17 14 39 39 H 1.08002 * 120.02215 * 180.27352 * 19 18 17 40 40 H 1.09005 * 109.46630 * 179.97438 * 22 21 20 41 41 H 1.08991 * 109.47027 * 299.99856 * 22 21 20 42 42 H 1.09005 * 109.46914 * 60.00349 * 22 21 20 43 43 H 1.08004 * 120.02936 * 179.97438 * 23 20 19 44 44 H 1.07998 * 119.97414 * 180.02562 * 24 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4326 1.4438 0.3978 5 6 3.5676 1.0158 1.8363 6 1 2.6916 0.7284 2.3988 7 6 4.8096 0.9911 2.4345 8 7 5.8764 1.3416 1.7497 9 14 4.9770 0.4612 4.2180 10 1 3.6376 0.1199 4.7608 11 1 5.8617 -0.7287 4.2998 12 1 5.5650 1.5707 5.0109 13 6 1.8151 2.0157 -1.3109 14 6 0.4034 2.6016 -1.3801 15 1 -0.3251 1.8210 -1.1612 16 6 0.2678 3.7281 -0.3538 17 6 0.1538 3.1484 -2.7621 18 6 0.9555 4.1591 -3.2596 19 6 0.7322 4.6581 -4.5284 20 6 -0.3045 4.1521 -5.2989 21 8 -0.5294 4.6449 -6.5454 22 6 0.3403 5.6842 -6.9987 23 6 -1.1111 3.1419 -4.7952 24 6 -0.8804 2.6427 -3.5280 25 1 -0.3634 -0.9845 0.2949 26 1 -0.3633 0.7476 0.7051 27 1 -0.3634 0.2368 -1.0000 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 4.0166 0.7767 -0.2362 31 1 3.7992 2.4643 0.2863 32 1 6.7502 1.3246 2.1707 33 1 2.5463 2.8122 -1.4489 34 1 1.9378 1.2697 -2.0961 35 1 0.4484 3.3327 0.6458 36 1 0.9964 4.5087 -0.5728 37 1 -0.7377 4.1458 -0.4034 38 1 1.7593 4.5560 -2.6575 39 1 1.3614 5.4445 -4.9182 40 1 0.0522 5.9855 -8.0059 41 1 0.2649 6.5396 -6.3276 42 1 1.3676 5.3197 -7.0088 43 1 -1.9191 2.7467 -5.3931 44 1 -1.5077 1.8561 -3.1356 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000271709590.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:34 Heat of formation + Delta-G solvation = -17.335346 kcal Electronic energy + Delta-G solvation = -21593.093828 eV Core-core repulsion = 18510.556864 eV Total energy + Delta-G solvation = -3082.536964 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.21730 -38.35787 -36.83061 -33.62971 -32.41243 -31.04292 -30.09719 -29.05912 -27.21524 -27.00130 -24.79428 -23.01835 -22.43115 -22.12482 -20.13915 -19.48852 -18.20971 -16.40364 -16.29061 -15.84809 -15.43275 -14.98843 -14.58221 -14.39001 -14.05620 -13.77894 -13.47614 -13.42373 -12.98559 -12.61345 -12.37410 -12.26082 -12.19201 -12.00639 -11.91360 -11.22758 -11.17687 -11.06516 -10.91918 -10.77520 -10.70065 -10.52383 -10.43863 -10.24003 -9.79499 -9.59999 -9.14674 -8.96599 -8.43180 -8.02392 -7.18641 -6.01541 -4.02388 1.37666 1.47780 3.17598 3.31327 3.38880 3.43655 3.80134 4.43312 4.74342 4.81757 4.87664 4.95320 4.96856 5.23943 5.27691 5.31246 5.34874 5.44757 5.51532 5.66301 5.72043 5.76010 5.87986 5.99632 6.07522 6.13712 6.21221 6.27660 6.30191 6.37306 6.39754 6.47509 6.58649 6.73454 6.78068 6.83591 6.86191 6.95378 7.33253 7.34943 7.40541 7.83613 8.13230 8.26422 8.59234 9.06217 9.61809 11.09330 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.028930 B = 0.003515 C = 0.003292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 967.627479 B = 7963.316954 C = 8503.329857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.056 3.944 3 N -0.533 5.533 4 C 0.193 3.807 5 C -0.504 4.504 6 H 0.064 0.936 7 C 0.054 3.946 8 N -0.899 5.899 9 Si 0.896 3.104 10 H -0.272 1.272 11 H -0.286 1.286 12 H -0.284 1.284 13 C 0.065 3.935 14 C -0.056 4.056 15 H 0.089 0.911 16 C -0.131 4.131 17 C -0.099 4.099 18 C -0.074 4.074 19 C -0.205 4.205 20 C 0.111 3.889 21 O -0.322 6.322 22 C 0.028 3.972 23 C -0.151 4.151 24 C -0.081 4.081 25 H 0.045 0.955 26 H 0.063 0.937 27 H 0.047 0.953 28 H 0.017 0.983 29 H 0.083 0.917 30 H -0.012 1.012 31 H 0.029 0.971 32 H 0.260 0.740 33 H 0.062 0.938 34 H 0.025 0.975 35 H 0.076 0.924 36 H 0.046 0.954 37 H 0.039 0.961 38 H 0.126 0.874 39 H 0.124 0.876 40 H 0.097 0.903 41 H 0.054 0.946 42 H 0.054 0.946 43 H 0.126 0.874 44 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.591 5.755 -13.598 19.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.072 4.072 3 N -0.257 5.257 4 C 0.068 3.932 5 C -0.543 4.543 6 H 0.082 0.918 7 C -0.147 4.147 8 N -0.539 5.539 9 Si 0.724 3.276 10 H -0.197 1.197 11 H -0.212 1.212 12 H -0.211 1.211 13 C -0.064 4.064 14 C -0.075 4.075 15 H 0.107 0.893 16 C -0.188 4.188 17 C -0.100 4.100 18 C -0.092 4.092 19 C -0.224 4.224 20 C 0.067 3.933 21 O -0.236 6.236 22 C -0.067 4.067 23 C -0.170 4.170 24 C -0.099 4.099 25 H 0.064 0.936 26 H 0.082 0.918 27 H 0.066 0.934 28 H 0.035 0.965 29 H 0.102 0.898 30 H 0.006 0.994 31 H 0.047 0.953 32 H 0.070 0.930 33 H 0.080 0.920 34 H 0.044 0.956 35 H 0.095 0.905 36 H 0.065 0.935 37 H 0.059 0.941 38 H 0.144 0.856 39 H 0.142 0.858 40 H 0.115 0.885 41 H 0.072 0.928 42 H 0.073 0.927 43 H 0.144 0.856 44 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -12.794 5.988 -13.362 19.445 hybrid contribution 1.073 -0.463 0.262 1.197 sum -11.722 5.525 -13.101 18.427 Atomic orbital electron populations 1.22029 0.96916 1.00803 1.00842 1.22026 0.94044 0.90397 1.00773 1.62056 1.23121 1.15913 1.24621 1.19740 0.81091 0.96701 0.95640 1.21214 0.92909 1.43821 0.96322 0.91775 1.24997 0.95854 0.95693 0.98152 1.69978 0.98551 1.48814 1.36561 0.86471 0.78088 0.78127 0.84913 1.19651 1.21189 1.21061 1.22113 0.95127 0.98050 0.91120 1.20485 0.98877 0.98357 0.89777 0.89282 1.21690 0.99711 0.97133 1.00268 1.20042 0.95900 0.96945 0.97088 1.20896 0.98556 0.95425 0.94345 1.21214 1.00322 1.04271 0.96562 1.18994 0.95192 0.94773 0.84358 1.86036 1.55542 1.52520 1.29519 1.23013 0.94096 0.89309 1.00264 1.20363 1.01485 0.98384 0.96778 1.20900 0.97129 0.98982 0.92913 0.93572 0.91776 0.93449 0.96494 0.89841 0.99387 0.95286 0.93049 0.91954 0.95642 0.90489 0.93461 0.94139 0.85606 0.85787 0.88510 0.92750 0.92700 0.85604 0.85548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.27 8.50 37.16 0.32 -1.96 16 2 C 0.06 1.08 5.51 -3.82 -0.02 1.06 16 3 N -0.53 -11.16 3.83 -236.07 -0.90 -12.06 16 4 C 0.19 4.99 4.65 -4.98 -0.02 4.97 16 5 C -0.50 -13.99 8.27 -34.44 -0.28 -14.27 16 6 H 0.06 1.77 7.27 -52.48 -0.38 1.38 16 7 C 0.05 1.53 5.46 -17.81 -0.10 1.43 16 8 N -0.90 -26.69 13.29 55.43 0.74 -25.95 16 9 Si 0.90 21.58 29.54 -169.99 -5.02 16.55 16 10 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 11 H -0.29 -6.83 7.11 56.52 0.40 -6.42 16 12 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 13 C 0.06 1.16 4.18 -3.82 -0.02 1.15 16 14 C -0.06 -0.84 2.46 -91.77 -0.23 -1.06 16 15 H 0.09 1.29 4.10 -51.93 -0.21 1.07 16 16 C -0.13 -1.97 8.89 37.16 0.33 -1.64 16 17 C -0.10 -1.36 4.78 -104.60 -0.50 -1.86 16 18 C -0.07 -0.99 8.75 -39.60 -0.35 -1.34 16 19 C -0.20 -2.52 9.04 -39.43 -0.36 -2.87 16 20 C 0.11 1.41 6.69 -39.22 -0.26 1.14 16 21 O -0.32 -3.75 10.50 -19.45 -0.20 -3.95 16 22 C 0.03 0.22 9.81 101.05 0.99 1.21 16 23 C -0.15 -1.86 9.99 -39.43 -0.39 -2.25 16 24 C -0.08 -1.01 9.66 -39.60 -0.38 -1.40 16 25 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 26 H 0.06 1.01 8.06 -51.93 -0.42 0.59 16 27 H 0.05 0.66 6.17 -51.93 -0.32 0.34 16 28 H 0.02 0.32 7.72 -51.93 -0.40 -0.08 16 29 H 0.08 1.77 6.58 -51.93 -0.34 1.43 16 30 H -0.01 -0.33 8.12 -51.93 -0.42 -0.75 16 31 H 0.03 0.80 7.79 -51.93 -0.40 0.40 16 32 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 33 H 0.06 1.16 6.99 -51.93 -0.36 0.80 16 34 H 0.03 0.46 7.58 -51.93 -0.39 0.07 16 35 H 0.08 1.31 7.74 -51.93 -0.40 0.91 16 36 H 0.05 0.70 7.37 -51.93 -0.38 0.32 16 37 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.13 1.65 7.15 -52.49 -0.38 1.27 16 39 H 0.12 1.26 6.30 -52.49 -0.33 0.93 16 40 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.05 0.38 7.66 -51.93 -0.40 -0.02 16 42 H 0.05 0.40 7.66 -51.93 -0.40 0.00 16 43 H 0.13 1.33 8.06 -52.48 -0.42 0.91 16 44 H 0.13 1.35 7.94 -52.49 -0.42 0.93 16 LS Contribution 348.09 15.07 5.25 5.25 Total: -1.00 -30.23 348.09 -8.61 -38.84 By element: Atomic # 1 Polarization: 6.22 SS G_CDS: -7.19 Total: -0.97 kcal Atomic # 6 Polarization: -16.43 SS G_CDS: -1.27 Total: -17.70 kcal Atomic # 7 Polarization: -37.85 SS G_CDS: -0.17 Total: -38.01 kcal Atomic # 8 Polarization: -3.75 SS G_CDS: -0.20 Total: -3.95 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -30.23 -8.61 -38.84 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271709590.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.505 kcal (2) G-P(sol) polarization free energy of solvation -30.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.841 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds