Wall clock time and date at job start Mon Mar 30 2020 02:06:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17396 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 C 1.53002 * 109.47536 * 50.61376 * 3 2 1 5 5 C 1.50695 * 109.47028 * 305.64495 * 4 3 2 6 6 O 1.21279 * 120.00104 * 127.04254 * 5 4 3 7 7 N 1.34774 * 120.00161 * 306.76113 * 5 4 3 8 8 C 1.46506 * 119.99867 * 359.69311 * 7 5 4 9 9 C 1.53008 * 109.46894 * 100.45301 * 8 7 5 10 10 C 1.46498 * 120.00330 * 179.69288 * 7 5 4 11 11 C 1.50696 * 109.47251 * 89.99876 * 10 7 5 12 12 H 1.07997 * 120.00022 * 0.02562 * 11 10 7 13 13 C 1.37879 * 120.00007 * 179.97438 * 11 10 7 14 14 N 1.31511 * 119.99926 * 0.02562 * 13 11 10 15 15 Si 1.86798 * 119.99918 * 180.02562 * 13 11 10 16 16 H 1.48498 * 109.47479 * 90.00257 * 15 13 11 17 17 H 1.48500 * 109.47209 * 210.00496 * 15 13 11 18 18 H 1.48509 * 109.47334 * 330.00318 * 15 13 11 19 19 C 1.53001 * 109.46648 * 65.64176 * 4 3 2 20 20 C 1.52996 * 109.46927 * 180.02562 * 19 4 3 21 21 C 1.53008 * 109.47250 * 300.00172 * 20 19 4 22 22 C 1.52996 * 109.47064 * 59.99812 * 21 20 19 23 23 C 1.52996 * 109.47240 * 300.00194 * 22 21 20 24 24 H 4.44651 * 5.63419 * 180.02562 * 4 1 2 25 25 H 1.09005 * 109.47206 * 290.61662 * 3 2 1 26 26 H 1.09003 * 109.47419 * 170.61723 * 3 2 1 27 27 H 1.08998 * 109.46773 * 220.45127 * 8 7 5 28 28 H 1.08994 * 109.47084 * 340.45759 * 8 7 5 29 29 H 1.08997 * 109.46987 * 176.09568 * 9 8 7 30 30 H 1.08999 * 109.46768 * 296.09779 * 9 8 7 31 31 H 1.08996 * 109.46882 * 56.09796 * 9 8 7 32 32 H 1.08998 * 109.47139 * 210.00526 * 10 7 5 33 33 H 1.09000 * 109.46755 * 330.00109 * 10 7 5 34 34 H 0.97003 * 119.99598 * 179.97438 * 14 13 11 35 35 H 1.08997 * 109.47489 * 300.00350 * 19 4 3 36 36 H 1.08997 * 109.46897 * 60.00301 * 19 4 3 37 37 H 1.09000 * 109.47321 * 180.02562 * 20 19 4 38 38 H 1.09001 * 109.47442 * 59.99946 * 20 19 4 39 39 H 1.09001 * 109.46713 * 300.00220 * 21 20 19 40 40 H 1.08996 * 109.47150 * 180.02562 * 21 20 19 41 41 H 1.09004 * 109.47160 * 180.02562 * 22 21 20 42 42 H 1.08997 * 109.46816 * 60.00128 * 22 21 20 43 43 H 1.09001 * 109.47442 * 300.00147 * 23 22 21 44 44 H 1.09000 * 109.47321 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 6 3.1565 -0.9144 -1.1149 5 6 2.5439 -2.2827 -0.9616 6 8 1.9699 -2.7984 -1.8972 7 7 2.6389 -2.9358 0.2135 8 6 3.3435 -2.3183 1.3398 9 6 2.3252 -1.7154 2.3097 10 6 2.0377 -4.2631 0.3646 11 6 3.0455 -5.3173 -0.0147 12 1 4.0351 -5.0276 -0.3357 13 6 2.7046 -6.6518 0.0492 14 7 1.4997 -7.0046 0.4407 15 14 3.9542 -7.9585 -0.4203 16 1 4.7309 -8.3552 0.7816 17 1 3.2480 -9.1449 -0.9671 18 1 4.8771 -7.4142 -1.4486 19 6 2.7653 -0.3298 -2.4736 20 6 3.2752 -1.2452 -3.5885 21 6 4.7987 -1.3562 -3.5005 22 6 5.1898 -1.9407 -2.1418 23 6 4.6799 -1.0254 -1.0269 24 1 -1.0499 -0.0001 -0.0004 25 1 3.0095 -0.3610 0.9619 26 1 3.0089 1.0147 -0.1675 27 1 3.9345 -3.0742 1.8570 28 1 4.0021 -1.5326 0.9697 29 1 2.8449 -1.3173 3.1811 30 1 1.7815 -0.9121 1.8125 31 1 1.6238 -2.4873 2.6262 32 1 1.7328 -4.4080 1.4010 33 1 1.1661 -4.3432 -0.2851 34 1 1.2598 -7.9434 0.4852 35 1 1.6800 -0.2511 -2.5365 36 1 3.2083 0.6599 -2.5844 37 1 2.9969 -0.8285 -4.5565 38 1 2.8319 -2.2347 -3.4775 39 1 5.2420 -0.3666 -3.6115 40 1 5.1620 -2.0079 -4.2950 41 1 6.2752 -2.0193 -2.0789 42 1 4.7464 -2.9302 -2.0308 43 1 5.1232 -0.0358 -1.1379 44 1 4.9582 -1.4420 -0.0589 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000276532805.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:24 Heat of formation + Delta-G solvation = 7.842617 kcal Electronic energy + Delta-G solvation = -23621.916394 eV Core-core repulsion = 20540.471228 eV Total energy + Delta-G solvation = -3081.445166 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.14365 -38.27339 -37.38782 -35.57571 -34.63549 -32.47920 -31.67024 -31.53520 -29.13544 -27.62501 -25.45547 -24.56269 -23.50235 -22.74488 -21.44145 -19.52213 -19.06527 -18.59474 -17.40913 -16.96970 -16.63113 -16.44916 -15.92502 -15.40832 -15.18313 -14.95005 -14.75128 -14.42384 -13.98959 -13.70259 -13.63018 -13.34677 -13.21659 -13.06577 -13.02874 -12.93125 -12.78677 -12.58093 -12.38763 -12.12277 -11.92136 -11.75503 -11.60190 -11.54119 -11.41552 -11.07355 -10.85891 -10.65421 -10.60950 -10.01638 -9.34185 -8.22389 -6.37191 1.32930 1.36307 1.46475 1.86491 1.91801 2.03704 2.31875 2.48877 3.06216 3.44308 3.53902 3.79024 3.87887 4.03267 4.07279 4.29779 4.36840 4.37723 4.45348 4.55559 4.57511 4.67795 4.73406 4.76738 4.83936 4.89767 4.95844 4.98534 5.02934 5.09316 5.14216 5.16352 5.24463 5.30638 5.38705 5.40894 5.46702 5.47312 5.58802 5.74847 5.93061 6.08371 6.71664 6.75441 6.91811 7.29692 7.63580 8.84367 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.016531 B = 0.007288 C = 0.006033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1693.346204 B = 3841.194748 C = 4639.930869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.193 4.193 3 C -0.035 4.035 4 C -0.065 4.065 5 C 0.516 3.484 6 O -0.591 6.591 7 N -0.598 5.598 8 C 0.077 3.923 9 C -0.184 4.184 10 C 0.267 3.733 11 C -0.535 4.535 12 H 0.053 0.947 13 C 0.005 3.995 14 N -0.931 5.931 15 Si 0.966 3.034 16 H -0.261 1.261 17 H -0.282 1.282 18 H -0.273 1.273 19 C -0.083 4.083 20 C -0.143 4.143 21 C -0.108 4.108 22 C -0.126 4.126 23 C -0.112 4.112 24 H 0.229 0.771 25 H 0.130 0.870 26 H 0.133 0.867 27 H 0.068 0.932 28 H 0.128 0.872 29 H 0.099 0.901 30 H 0.075 0.925 31 H 0.031 0.969 32 H 0.014 0.986 33 H -0.013 1.013 34 H 0.266 0.734 35 H 0.038 0.962 36 H 0.102 0.898 37 H 0.062 0.938 38 H 0.052 0.948 39 H 0.091 0.909 40 H 0.051 0.949 41 H 0.085 0.915 42 H 0.017 0.983 43 H 0.121 0.879 44 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.356 18.601 0.646 20.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C -0.193 4.193 3 C -0.070 4.070 4 C -0.068 4.068 5 C 0.305 3.695 6 O -0.472 6.472 7 N -0.328 5.328 8 C -0.045 4.045 9 C -0.242 4.242 10 C 0.146 3.854 11 C -0.573 4.573 12 H 0.072 0.928 13 C -0.193 4.193 14 N -0.571 5.571 15 Si 0.790 3.210 16 H -0.186 1.186 17 H -0.208 1.208 18 H -0.197 1.197 19 C -0.121 4.121 20 C -0.181 4.181 21 C -0.145 4.145 22 C -0.164 4.164 23 C -0.149 4.149 24 H 0.246 0.754 25 H 0.147 0.853 26 H 0.151 0.849 27 H 0.086 0.914 28 H 0.145 0.855 29 H 0.118 0.882 30 H 0.093 0.907 31 H 0.050 0.950 32 H 0.032 0.968 33 H 0.005 0.995 34 H 0.074 0.926 35 H 0.057 0.943 36 H 0.120 0.880 37 H 0.081 0.919 38 H 0.071 0.929 39 H 0.110 0.890 40 H 0.070 0.930 41 H 0.104 0.896 42 H 0.036 0.964 43 H 0.139 0.861 44 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 7.951 18.164 0.227 19.829 hybrid contribution -0.661 -1.734 -0.311 1.881 sum 7.290 16.430 -0.084 17.975 Atomic orbital electron populations 1.25502 0.97061 1.01126 1.00871 1.23362 0.95383 1.00325 1.00263 1.19892 0.84320 1.02351 1.00468 1.20877 0.97668 0.90499 0.97739 1.21067 0.79129 0.87768 0.81502 1.90526 1.46191 1.70401 1.40080 1.48121 1.54498 1.17993 1.12232 1.22374 0.95503 0.98917 0.87694 1.22606 1.00016 1.01163 1.00405 1.18559 0.92594 0.79541 0.94744 1.21681 0.99071 0.91779 1.44786 0.92829 1.25877 0.97464 1.00968 0.95036 1.70070 1.20774 1.17759 1.48459 0.85441 0.78692 0.77972 0.78878 1.18630 1.20763 1.19739 1.21327 0.99793 0.99230 0.91717 1.21852 0.96844 1.01203 0.98179 1.21472 0.94926 1.01823 0.96299 1.21564 1.01291 0.97756 0.95778 1.21926 0.90408 1.02947 0.99605 0.75427 0.85274 0.84923 0.91375 0.85522 0.88190 0.90651 0.94960 0.96763 0.99457 0.92552 0.94325 0.87953 0.91923 0.92912 0.89010 0.93022 0.89640 0.96418 0.86051 0.89711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.23 -6.70 19.25 74.32 1.43 -5.27 16 2 C -0.19 -5.58 9.20 31.13 0.29 -5.30 16 3 C -0.03 -0.78 4.08 28.79 0.12 -0.67 16 4 C -0.06 -1.84 0.28 -52.93 -0.01 -1.85 16 5 C 0.52 21.95 4.11 87.66 0.36 22.31 16 6 O -0.59 -31.70 13.01 -3.03 -0.04 -31.73 16 7 N -0.60 -26.14 2.47 -826.16 -2.04 -28.18 16 8 C 0.08 2.41 5.13 86.38 0.44 2.86 16 9 C -0.18 -5.07 9.17 71.98 0.66 -4.41 16 10 C 0.27 15.09 5.14 85.63 0.44 15.53 16 11 C -0.53 -31.73 9.39 25.60 0.24 -31.49 16 12 H 0.05 3.14 7.81 -2.91 -0.02 3.11 16 13 C 0.01 0.30 5.46 84.66 0.46 0.76 16 14 N -0.93 -58.16 13.29 21.45 0.28 -57.88 16 15 Si 0.97 46.14 29.54 68.60 2.03 48.17 16 16 H -0.26 -11.64 7.11 99.48 0.71 -10.93 16 17 H -0.28 -13.24 7.11 99.48 0.71 -12.53 16 18 H -0.27 -12.85 7.11 99.48 0.71 -12.14 16 19 C -0.08 -2.32 4.24 30.59 0.13 -2.19 16 20 C -0.14 -4.51 5.63 30.60 0.17 -4.34 16 21 C -0.11 -2.75 5.92 30.60 0.18 -2.57 16 22 C -0.13 -3.50 5.70 30.59 0.17 -3.32 16 23 C -0.11 -2.49 4.48 30.59 0.14 -2.35 16 24 H 0.23 5.38 7.80 -4.42 -0.03 5.34 16 25 H 0.13 2.60 2.81 -2.38 -0.01 2.60 16 26 H 0.13 1.87 8.14 -2.39 -0.02 1.85 16 27 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 28 H 0.13 2.95 2.54 -2.39 -0.01 2.94 16 29 H 0.10 1.94 8.14 -2.39 -0.02 1.92 16 30 H 0.07 2.02 3.79 -2.39 -0.01 2.01 16 31 H 0.03 1.07 7.69 -2.39 -0.02 1.06 16 32 H 0.01 0.83 7.62 -2.39 -0.02 0.82 16 33 H -0.01 -0.84 7.43 -2.39 -0.02 -0.86 16 34 H 0.27 15.56 8.31 -92.71 -0.77 14.79 16 35 H 0.04 1.27 7.40 -2.39 -0.02 1.25 16 36 H 0.10 1.98 8.14 -2.39 -0.02 1.96 16 37 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 38 H 0.05 2.26 5.26 -2.39 -0.01 2.25 16 39 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 40 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 41 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 42 H 0.02 0.67 7.21 -2.39 -0.02 0.65 16 43 H 0.12 1.60 8.14 -2.39 -0.02 1.58 16 44 H 0.08 1.79 5.10 -2.39 -0.01 1.78 16 Total: -1.00 -80.05 330.88 6.43 -73.62 By element: Atomic # 1 Polarization: 17.33 SS G_CDS: 0.98 Total: 18.31 kcal Atomic # 6 Polarization: -27.52 SS G_CDS: 5.22 Total: -22.30 kcal Atomic # 7 Polarization: -84.31 SS G_CDS: -1.76 Total: -86.06 kcal Atomic # 8 Polarization: -31.70 SS G_CDS: -0.04 Total: -31.73 kcal Atomic # 14 Polarization: 46.14 SS G_CDS: 2.03 Total: 48.17 kcal Total: -80.05 6.43 -73.62 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000276532805.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.459 kcal (2) G-P(sol) polarization free energy of solvation -80.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.616 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds