Wall clock time and date at job start Mon Mar 30 2020 02:14:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46898 * 111.00297 * 2 1 4 4 C 1.52997 * 109.46930 * 293.95503 * 3 2 1 5 5 C 1.50702 * 109.47395 * 179.97438 * 4 3 2 6 6 H 1.08004 * 119.99696 * 359.97438 * 5 4 3 7 7 C 1.37874 * 120.00615 * 179.97438 * 5 4 3 8 8 N 1.31517 * 119.99927 * 359.97438 * 7 5 4 9 9 Si 1.86797 * 120.00174 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.47225 * 59.99754 * 9 7 5 11 11 H 1.48505 * 109.47098 * 179.97438 * 9 7 5 12 12 H 1.48497 * 109.47294 * 299.99624 * 9 7 5 13 13 C 1.46901 * 111.00081 * 123.95616 * 2 1 3 14 14 C 1.53001 * 109.47441 * 66.04167 * 13 2 1 15 15 C 1.52995 * 109.47162 * 180.02562 * 14 13 2 16 16 O 1.42903 * 109.46972 * 180.02562 * 15 14 13 17 17 C 1.42893 * 113.99793 * 180.02562 * 16 15 14 18 18 C 1.50707 * 109.47070 * 179.97438 * 17 16 15 19 19 C 1.38238 * 119.99792 * 89.99993 * 18 17 16 20 20 C 1.38235 * 119.99712 * 179.97438 * 19 18 17 21 21 C 1.38234 * 120.00220 * 359.97124 * 20 19 18 22 22 C 1.38233 * 120.00037 * 0.28719 * 21 20 19 23 23 C 1.38234 * 120.00179 * 269.97930 * 18 17 16 24 24 H 1.08996 * 109.47318 * 296.04674 * 1 2 3 25 25 H 1.09002 * 109.47285 * 56.04366 * 1 2 3 26 26 H 1.08995 * 109.47167 * 176.04685 * 1 2 3 27 27 H 1.08996 * 109.46940 * 53.95369 * 3 2 1 28 28 H 1.09000 * 109.47214 * 173.95839 * 3 2 1 29 29 H 1.09004 * 109.47131 * 299.99382 * 4 3 2 30 30 H 1.08997 * 109.47569 * 59.99840 * 4 3 2 31 31 H 0.96993 * 120.00412 * 180.02562 * 8 7 5 32 32 H 1.09005 * 109.46864 * 306.04357 * 13 2 1 33 33 H 1.08993 * 109.47171 * 186.04630 * 13 2 1 34 34 H 1.09001 * 109.46447 * 60.00273 * 14 13 2 35 35 H 1.09005 * 109.47034 * 300.00583 * 14 13 2 36 36 H 1.09005 * 109.47112 * 60.00208 * 15 14 13 37 37 H 1.08993 * 109.47202 * 300.00311 * 15 14 13 38 38 H 1.09005 * 109.47744 * 60.00256 * 17 16 15 39 39 H 1.09000 * 109.47353 * 299.99456 * 17 16 15 40 40 H 1.08005 * 120.00068 * 359.97438 * 19 18 17 41 41 H 1.07999 * 119.99770 * 179.97438 * 20 19 18 42 42 H 1.08002 * 119.99744 * 180.02562 * 21 20 19 43 43 H 1.07998 * 120.00395 * 179.72811 * 22 21 20 44 44 H 1.07999 * 119.99968 * 359.97438 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6315 2.0574 -1.3182 5 6 2.1710 3.4645 -1.3181 6 1 2.7184 3.8328 -0.4630 7 6 1.9659 4.2817 -2.4094 8 7 1.2997 3.8331 -3.4509 9 14 2.6353 6.0256 -2.4094 10 1 4.1125 5.9888 -2.2614 11 1 2.2830 6.6911 -3.6894 12 1 2.0432 6.7831 -1.2778 13 6 1.9954 -0.7660 1.1376 14 6 1.6314 -2.2427 0.9704 15 6 2.1792 -3.0403 2.1555 16 8 1.8396 -4.4196 1.9990 17 6 2.3065 -5.2568 3.0587 18 6 1.8939 -6.6816 2.7921 19 6 2.7265 -7.5194 2.0740 20 6 2.3483 -8.8265 1.8300 21 6 1.1377 -9.2958 2.3045 22 6 0.3027 -8.4564 3.0180 23 6 0.6830 -7.1508 3.2661 24 1 -0.3634 0.4512 0.9232 25 1 -0.3634 0.5740 -0.8524 26 1 -0.3633 -1.0252 -0.0708 27 1 1.5611 1.9273 0.8309 28 1 3.0797 1.3443 0.1082 29 1 2.0659 1.5015 -2.1492 30 1 0.5472 2.0844 -1.4265 31 1 1.1557 4.4078 -4.2188 32 1 1.5611 -0.3872 2.0628 33 1 3.0796 -0.6611 1.1756 34 1 2.0658 -2.6214 0.0452 35 1 0.5471 -2.3475 0.9323 36 1 1.7445 -2.6614 3.0805 37 1 3.2634 -2.9355 2.1939 38 1 1.8737 -4.9242 4.0022 39 1 3.3933 -5.1978 3.1165 40 1 3.6725 -7.1529 1.7036 41 1 2.9986 -9.4809 1.2686 42 1 0.8425 -10.3171 2.1142 43 1 -0.6450 -8.8218 3.3850 44 1 0.0329 -6.4964 3.8278 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000281268391.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:18 Heat of formation + Delta-G solvation = -31.790411 kcal Electronic energy + Delta-G solvation = -20042.878150 eV Core-core repulsion = 16959.714367 eV Total energy + Delta-G solvation = -3083.163783 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.65954 -38.12821 -37.15368 -33.52214 -32.62217 -31.49327 -31.20127 -29.24389 -26.82157 -26.06655 -24.88695 -22.88436 -22.83677 -21.66323 -20.66459 -19.84567 -17.20929 -16.78031 -16.47516 -16.31291 -15.71922 -15.36559 -14.90521 -14.60971 -14.51400 -14.01953 -13.73467 -13.58878 -13.44952 -13.00833 -12.68244 -12.43896 -12.13739 -11.98120 -11.61711 -11.33984 -11.28744 -11.15038 -11.10916 -11.01292 -10.86957 -10.54935 -10.47173 -9.82218 -9.76481 -9.34993 -9.21573 -9.13903 -9.10613 -8.30748 -7.70359 -5.97259 -3.99790 0.96289 1.10679 3.25226 3.34631 3.38988 3.41246 3.79598 4.40780 4.50688 4.51293 4.67538 4.73192 4.82436 4.92251 5.00540 5.05421 5.17773 5.27675 5.34288 5.35125 5.38227 5.46182 5.58918 5.66177 5.73517 5.78996 5.87490 5.98995 6.13830 6.19903 6.22372 6.29555 6.30778 6.31517 6.50630 6.57558 6.67680 6.99139 7.03494 7.52742 7.59770 7.82018 7.92812 8.11178 8.45800 9.07301 9.63496 11.14091 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.048171 B = 0.002043 C = 0.002035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 581.125497 B =13702.819394 C =13755.212414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.542 5.542 3 C 0.063 3.937 4 C 0.027 3.973 5 C -0.523 4.523 6 H 0.053 0.947 7 C 0.058 3.942 8 N -0.893 5.893 9 Si 0.893 3.107 10 H -0.277 1.277 11 H -0.287 1.287 12 H -0.278 1.278 13 C 0.058 3.942 14 C -0.114 4.114 15 C 0.064 3.936 16 O -0.381 6.381 17 C 0.102 3.898 18 C -0.089 4.089 19 C -0.098 4.098 20 C -0.124 4.124 21 C -0.117 4.117 22 C -0.124 4.124 23 C -0.099 4.099 24 H 0.016 0.984 25 H 0.078 0.922 26 H 0.059 0.941 27 H 0.019 0.981 28 H 0.060 0.940 29 H 0.025 0.975 30 H 0.018 0.982 31 H 0.261 0.739 32 H 0.026 0.974 33 H 0.071 0.929 34 H 0.079 0.921 35 H 0.070 0.930 36 H 0.047 0.953 37 H 0.050 0.950 38 H 0.056 0.944 39 H 0.057 0.943 40 H 0.123 0.877 41 H 0.123 0.877 42 H 0.122 0.878 43 H 0.123 0.877 44 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.426 -24.270 15.016 28.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 N -0.266 5.266 3 C -0.064 4.064 4 C -0.010 4.010 5 C -0.562 4.562 6 H 0.071 0.929 7 C -0.144 4.144 8 N -0.532 5.532 9 Si 0.721 3.279 10 H -0.202 1.202 11 H -0.213 1.213 12 H -0.203 1.203 13 C -0.070 4.070 14 C -0.152 4.152 15 C -0.013 4.013 16 O -0.300 6.300 17 C 0.025 3.975 18 C -0.089 4.089 19 C -0.117 4.117 20 C -0.142 4.142 21 C -0.135 4.135 22 C -0.142 4.142 23 C -0.117 4.117 24 H 0.035 0.965 25 H 0.097 0.903 26 H 0.077 0.923 27 H 0.037 0.963 28 H 0.078 0.922 29 H 0.043 0.957 30 H 0.036 0.964 31 H 0.071 0.929 32 H 0.045 0.955 33 H 0.089 0.911 34 H 0.098 0.902 35 H 0.088 0.912 36 H 0.065 0.935 37 H 0.068 0.932 38 H 0.074 0.926 39 H 0.075 0.925 40 H 0.141 0.859 41 H 0.141 0.859 42 H 0.140 0.860 43 H 0.141 0.859 44 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 0.420 -24.498 14.249 28.344 hybrid contribution 0.193 1.490 0.903 1.753 sum 0.613 -23.008 15.152 27.556 Atomic orbital electron populations 1.22431 0.88069 1.01086 1.00901 1.62040 1.07699 1.15982 1.40923 1.22351 0.98492 0.85120 1.00423 1.19102 0.96946 0.93992 0.90962 1.21160 1.35264 0.97822 1.01907 0.92877 1.24999 0.95325 0.98467 0.95575 1.69962 1.40783 1.36491 1.05973 0.86649 0.79428 0.84676 0.77164 1.20249 1.21276 1.20331 1.21959 1.00133 0.92553 0.92370 1.21512 1.01958 0.93825 0.97926 1.22518 0.99001 0.81008 0.98776 1.87973 1.78561 1.18021 1.45457 1.21284 0.98285 0.87316 0.90568 1.19647 0.95373 0.94455 0.99408 1.21103 0.99770 0.93678 0.97107 1.21166 0.96973 0.95814 1.00241 1.21206 0.94536 0.99801 0.97920 1.21158 0.99785 0.93938 0.99352 1.21088 0.95431 0.95796 0.99419 0.96513 0.90287 0.92278 0.96266 0.92164 0.95692 0.96414 0.92944 0.95541 0.91069 0.90238 0.91172 0.93512 0.93198 0.92559 0.92458 0.85852 0.85884 0.86038 0.85919 0.85936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.41 9.13 60.06 0.55 0.95 16 2 N -0.54 -10.18 4.76 -242.93 -1.16 -11.33 16 3 C 0.06 1.36 4.90 -3.83 -0.02 1.34 16 4 C 0.03 0.72 4.90 -27.88 -0.14 0.59 16 5 C -0.52 -15.00 9.11 -34.44 -0.31 -15.32 16 6 H 0.05 1.47 7.74 -52.48 -0.41 1.06 16 7 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 8 N -0.89 -27.16 13.29 55.43 0.74 -26.42 16 9 Si 0.89 21.83 29.54 -169.99 -5.02 16.81 16 10 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 11 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 12 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 13 C 0.06 0.87 4.96 -3.82 -0.02 0.85 16 14 C -0.11 -1.51 5.51 -26.73 -0.15 -1.66 16 15 C 0.06 0.71 5.94 37.16 0.22 0.93 16 16 O -0.38 -4.65 10.33 -35.23 -0.36 -5.01 16 17 C 0.10 0.96 6.06 36.01 0.22 1.18 16 18 C -0.09 -0.86 5.51 -104.62 -0.58 -1.44 16 19 C -0.10 -0.89 9.70 -39.58 -0.38 -1.28 16 20 C -0.12 -1.00 10.05 -39.58 -0.40 -1.39 16 21 C -0.12 -0.89 10.05 -39.58 -0.40 -1.29 16 22 C -0.12 -0.99 10.05 -39.58 -0.40 -1.39 16 23 C -0.10 -0.89 9.70 -39.58 -0.38 -1.28 16 24 H 0.02 0.27 8.14 -51.93 -0.42 -0.15 16 25 H 0.08 1.53 6.30 -51.93 -0.33 1.20 16 26 H 0.06 0.90 6.47 -51.93 -0.34 0.56 16 27 H 0.02 0.41 8.12 -51.93 -0.42 -0.01 16 28 H 0.06 1.27 7.93 -51.93 -0.41 0.86 16 29 H 0.02 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.02 0.49 6.47 -51.93 -0.34 0.16 16 31 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 32 H 0.03 0.38 8.12 -51.93 -0.42 -0.05 16 33 H 0.07 1.02 7.93 -51.93 -0.41 0.61 16 34 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 35 H 0.07 0.95 6.55 -51.93 -0.34 0.61 16 36 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 37 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.06 0.45 8.08 -51.93 -0.42 0.03 16 39 H 0.06 0.47 8.09 -51.93 -0.42 0.05 16 40 H 0.12 0.97 8.06 -52.48 -0.42 0.54 16 41 H 0.12 0.73 8.06 -52.49 -0.42 0.31 16 42 H 0.12 0.66 8.06 -52.49 -0.42 0.24 16 43 H 0.12 0.72 8.06 -52.49 -0.42 0.29 16 44 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 LS Contribution 361.37 15.07 5.45 5.45 Total: -1.00 -31.77 361.37 -10.26 -42.03 By element: Atomic # 1 Polarization: 3.71 SS G_CDS: -7.62 Total: -3.91 kcal Atomic # 6 Polarization: -15.33 SS G_CDS: -2.28 Total: -17.62 kcal Atomic # 7 Polarization: -37.33 SS G_CDS: -0.42 Total: -37.75 kcal Atomic # 8 Polarization: -4.65 SS G_CDS: -0.36 Total: -5.01 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -31.77 -10.26 -42.03 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281268391.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.241 kcal (2) G-P(sol) polarization free energy of solvation -31.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.031 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds