Wall clock time and date at job start Mon Mar 30 2020 02:14:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46898 * 111.00297 * 2 1 4 4 C 1.52997 * 109.46930 * 293.95503 * 3 2 1 5 5 C 1.50702 * 109.47395 * 179.97438 * 4 3 2 6 6 H 1.08004 * 119.99696 * 359.97438 * 5 4 3 7 7 C 1.37874 * 120.00615 * 179.97438 * 5 4 3 8 8 N 1.31517 * 119.99927 * 359.97438 * 7 5 4 9 9 Si 1.86797 * 120.00174 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.47225 * 59.99754 * 9 7 5 11 11 H 1.48505 * 109.47098 * 179.97438 * 9 7 5 12 12 H 1.48497 * 109.47294 * 299.99624 * 9 7 5 13 13 C 1.46901 * 111.00081 * 123.95616 * 2 1 3 14 14 C 1.53001 * 109.47441 * 66.04167 * 13 2 1 15 15 C 1.52995 * 109.47162 * 180.02562 * 14 13 2 16 16 O 1.42903 * 109.46972 * 180.02562 * 15 14 13 17 17 C 1.42893 * 113.99793 * 180.02562 * 16 15 14 18 18 C 1.50707 * 109.47070 * 179.97438 * 17 16 15 19 19 C 1.38238 * 119.99792 * 89.99993 * 18 17 16 20 20 C 1.38235 * 119.99712 * 179.97438 * 19 18 17 21 21 C 1.38234 * 120.00220 * 359.97124 * 20 19 18 22 22 C 1.38233 * 120.00037 * 0.28719 * 21 20 19 23 23 C 1.38234 * 120.00179 * 269.97930 * 18 17 16 24 24 H 1.08996 * 109.47318 * 296.04674 * 1 2 3 25 25 H 1.09002 * 109.47285 * 56.04366 * 1 2 3 26 26 H 1.08995 * 109.47167 * 176.04685 * 1 2 3 27 27 H 1.08996 * 109.46940 * 53.95369 * 3 2 1 28 28 H 1.09000 * 109.47214 * 173.95839 * 3 2 1 29 29 H 1.09004 * 109.47131 * 299.99382 * 4 3 2 30 30 H 1.08997 * 109.47569 * 59.99840 * 4 3 2 31 31 H 0.96993 * 120.00412 * 180.02562 * 8 7 5 32 32 H 1.09005 * 109.46864 * 306.04357 * 13 2 1 33 33 H 1.08993 * 109.47171 * 186.04630 * 13 2 1 34 34 H 1.09001 * 109.46447 * 60.00273 * 14 13 2 35 35 H 1.09005 * 109.47034 * 300.00583 * 14 13 2 36 36 H 1.09005 * 109.47112 * 60.00208 * 15 14 13 37 37 H 1.08993 * 109.47202 * 300.00311 * 15 14 13 38 38 H 1.09005 * 109.47744 * 60.00256 * 17 16 15 39 39 H 1.09000 * 109.47353 * 299.99456 * 17 16 15 40 40 H 1.08005 * 120.00068 * 359.97438 * 19 18 17 41 41 H 1.07999 * 119.99770 * 179.97438 * 20 19 18 42 42 H 1.08002 * 119.99744 * 180.02562 * 21 20 19 43 43 H 1.07998 * 120.00395 * 179.72811 * 22 21 20 44 44 H 1.07999 * 119.99968 * 359.97438 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6315 2.0574 -1.3182 5 6 2.1710 3.4645 -1.3181 6 1 2.7184 3.8328 -0.4630 7 6 1.9659 4.2817 -2.4094 8 7 1.2997 3.8331 -3.4509 9 14 2.6353 6.0256 -2.4094 10 1 4.1125 5.9888 -2.2614 11 1 2.2830 6.6911 -3.6894 12 1 2.0432 6.7831 -1.2778 13 6 1.9954 -0.7660 1.1376 14 6 1.6314 -2.2427 0.9704 15 6 2.1792 -3.0403 2.1555 16 8 1.8396 -4.4196 1.9990 17 6 2.3065 -5.2568 3.0587 18 6 1.8939 -6.6816 2.7921 19 6 2.7265 -7.5194 2.0740 20 6 2.3483 -8.8265 1.8300 21 6 1.1377 -9.2958 2.3045 22 6 0.3027 -8.4564 3.0180 23 6 0.6830 -7.1508 3.2661 24 1 -0.3634 0.4512 0.9232 25 1 -0.3634 0.5740 -0.8524 26 1 -0.3633 -1.0252 -0.0708 27 1 1.5611 1.9273 0.8309 28 1 3.0797 1.3443 0.1082 29 1 2.0659 1.5015 -2.1492 30 1 0.5472 2.0844 -1.4265 31 1 1.1557 4.4078 -4.2188 32 1 1.5611 -0.3872 2.0628 33 1 3.0796 -0.6611 1.1756 34 1 2.0658 -2.6214 0.0452 35 1 0.5471 -2.3475 0.9323 36 1 1.7445 -2.6614 3.0805 37 1 3.2634 -2.9355 2.1939 38 1 1.8737 -4.9242 4.0022 39 1 3.3933 -5.1978 3.1165 40 1 3.6725 -7.1529 1.7036 41 1 2.9986 -9.4809 1.2686 42 1 0.8425 -10.3171 2.1142 43 1 -0.6450 -8.8218 3.3850 44 1 0.0329 -6.4964 3.8278 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000281268391.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:17 Heat of formation + Delta-G solvation = -50.176061 kcal Electronic energy + Delta-G solvation = -20043.675411 eV Core-core repulsion = 16959.714367 eV Total energy + Delta-G solvation = -3083.961044 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.29885 -39.19471 -38.36348 -35.37441 -33.87398 -32.54353 -31.79566 -31.00116 -28.02568 -27.27430 -26.32244 -24.34393 -23.48492 -22.39166 -21.90271 -21.50351 -18.60947 -17.83834 -17.50804 -17.30961 -16.54378 -16.53443 -16.39250 -16.07506 -15.70236 -15.06223 -14.94329 -14.72522 -14.28106 -14.16105 -13.97252 -13.67741 -13.28714 -13.24257 -13.02273 -12.83644 -12.69993 -12.59464 -12.36211 -12.13855 -11.93678 -11.84309 -11.75614 -11.63160 -11.32036 -11.21898 -10.57605 -10.52864 -9.82951 -9.76663 -9.18620 -8.19093 -6.30766 0.33327 0.49292 1.40573 1.44153 1.52042 2.40158 2.52116 2.99180 3.13928 3.31523 3.87366 3.91005 3.98099 4.14390 4.20112 4.25407 4.29823 4.33954 4.34813 4.45654 4.49041 4.51317 4.55519 4.63898 4.68927 4.72119 4.76462 4.82393 4.99658 5.07440 5.09607 5.14914 5.18596 5.27560 5.47157 5.54374 5.60518 5.66335 5.66677 5.79307 6.09064 6.09807 6.21932 6.33011 6.33929 6.86444 7.38152 8.92900 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.048171 B = 0.002043 C = 0.002035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 581.125497 B =13702.819394 C =13755.212414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.560 5.560 3 C 0.079 3.921 4 C 0.034 3.966 5 C -0.545 4.545 6 H 0.061 0.939 7 C -0.001 4.001 8 N -0.932 5.932 9 Si 0.968 3.032 10 H -0.266 1.266 11 H -0.283 1.283 12 H -0.266 1.266 13 C 0.061 3.939 14 C -0.106 4.106 15 C 0.068 3.932 16 O -0.404 6.404 17 C 0.100 3.900 18 C -0.109 4.109 19 C -0.115 4.115 20 C -0.132 4.132 21 C -0.122 4.122 22 C -0.132 4.132 23 C -0.114 4.114 24 H 0.027 0.973 25 H 0.049 0.951 26 H 0.081 0.919 27 H 0.022 0.978 28 H 0.065 0.935 29 H -0.010 1.010 30 H -0.005 1.005 31 H 0.264 0.736 32 H 0.041 0.959 33 H 0.078 0.922 34 H 0.063 0.937 35 H 0.066 0.934 36 H 0.062 0.938 37 H 0.061 0.939 38 H 0.069 0.931 39 H 0.068 0.932 40 H 0.129 0.871 41 H 0.141 0.859 42 H 0.144 0.856 43 H 0.142 0.858 44 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.969 -24.650 16.616 29.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.284 5.284 3 C -0.048 4.048 4 C -0.003 4.003 5 C -0.584 4.584 6 H 0.080 0.920 7 C -0.199 4.199 8 N -0.572 5.572 9 Si 0.793 3.207 10 H -0.191 1.191 11 H -0.209 1.209 12 H -0.191 1.191 13 C -0.066 4.066 14 C -0.144 4.144 15 C -0.008 4.008 16 O -0.324 6.324 17 C 0.024 3.976 18 C -0.109 4.109 19 C -0.133 4.133 20 C -0.150 4.150 21 C -0.140 4.140 22 C -0.150 4.150 23 C -0.132 4.132 24 H 0.046 0.954 25 H 0.068 0.932 26 H 0.100 0.900 27 H 0.041 0.959 28 H 0.083 0.917 29 H 0.009 0.991 30 H 0.013 0.987 31 H 0.072 0.928 32 H 0.059 0.941 33 H 0.096 0.904 34 H 0.082 0.918 35 H 0.084 0.916 36 H 0.080 0.920 37 H 0.079 0.921 38 H 0.087 0.913 39 H 0.086 0.914 40 H 0.147 0.853 41 H 0.159 0.841 42 H 0.162 0.838 43 H 0.160 0.840 44 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 0.967 -24.897 15.872 29.542 hybrid contribution -0.012 1.495 0.396 1.547 sum 0.956 -23.402 16.268 28.517 Atomic orbital electron populations 1.22381 0.87453 1.02101 1.00135 1.61937 1.08463 1.14476 1.43524 1.21989 0.98819 0.86585 0.97446 1.18944 0.95091 0.93728 0.92573 1.21609 1.35470 0.98918 1.02393 0.92039 1.26003 0.95449 1.03402 0.95041 1.70109 1.41998 1.38356 1.06732 0.85455 0.79093 0.78686 0.77513 1.19092 1.20867 1.19111 1.21998 1.00486 0.92842 0.91309 1.21378 1.01648 0.92986 0.98376 1.22442 0.99656 0.80600 0.98123 1.87928 1.79084 1.18534 1.46879 1.21420 0.99003 0.86865 0.90295 1.19837 0.96042 0.94791 1.00267 1.21320 1.00195 0.94332 0.97460 1.21471 0.97546 0.95768 1.00229 1.21555 0.94262 1.00899 0.97288 1.21475 1.00672 0.93684 0.99141 1.21315 0.95508 0.96584 0.99808 0.95400 0.93183 0.90022 0.95949 0.91658 0.99118 0.98676 0.92768 0.94100 0.90366 0.91838 0.91570 0.91960 0.92054 0.91283 0.91410 0.85317 0.84077 0.83802 0.83986 0.85176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.95 9.13 127.69 1.17 2.11 16 2 N -0.56 -20.81 4.76 -922.49 -4.39 -25.20 16 3 C 0.08 3.42 4.90 86.30 0.42 3.84 16 4 C 0.03 1.87 4.90 29.85 0.15 2.01 16 5 C -0.55 -31.62 9.11 25.60 0.23 -31.39 16 6 H 0.06 3.38 7.74 -2.91 -0.02 3.35 16 7 C 0.00 -0.06 5.46 84.65 0.46 0.40 16 8 N -0.93 -57.84 13.29 21.45 0.28 -57.55 16 9 Si 0.97 44.67 29.54 68.60 2.03 46.70 16 10 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 11 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 12 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 13 C 0.06 1.73 4.96 86.30 0.43 2.15 16 14 C -0.11 -2.66 5.51 30.59 0.17 -2.49 16 15 C 0.07 1.39 5.94 71.98 0.43 1.82 16 16 O -0.40 -9.39 10.33 -148.98 -1.54 -10.93 16 17 C 0.10 1.76 6.06 71.24 0.43 2.20 16 18 C -0.11 -2.05 5.51 -19.86 -0.11 -2.16 16 19 C -0.12 -2.01 9.70 22.27 0.22 -1.80 16 20 C -0.13 -1.97 10.05 22.27 0.22 -1.75 16 21 C -0.12 -1.67 10.05 22.27 0.22 -1.45 16 22 C -0.13 -1.92 10.05 22.27 0.22 -1.70 16 23 C -0.11 -1.95 9.70 22.27 0.22 -1.73 16 24 H 0.03 0.89 8.14 -2.39 -0.02 0.87 16 25 H 0.05 2.01 6.30 -2.39 -0.02 1.99 16 26 H 0.08 2.43 6.47 -2.39 -0.02 2.41 16 27 H 0.02 0.95 8.12 -2.39 -0.02 0.93 16 28 H 0.06 2.73 7.93 -2.39 -0.02 2.71 16 29 H -0.01 -0.58 8.14 -2.38 -0.02 -0.60 16 30 H -0.01 -0.30 6.47 -2.39 -0.02 -0.31 16 31 H 0.26 15.36 8.31 -92.71 -0.77 14.59 16 32 H 0.04 1.06 8.12 -2.38 -0.02 1.04 16 33 H 0.08 2.09 7.93 -2.39 -0.02 2.07 16 34 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 35 H 0.07 1.70 6.55 -2.38 -0.02 1.69 16 36 H 0.06 1.08 8.14 -2.38 -0.02 1.06 16 37 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 38 H 0.07 1.00 8.08 -2.38 -0.02 0.99 16 39 H 0.07 1.01 8.09 -2.39 -0.02 1.00 16 40 H 0.13 1.96 8.06 -2.91 -0.02 1.94 16 41 H 0.14 1.46 8.06 -2.91 -0.02 1.44 16 42 H 0.14 1.23 8.06 -2.91 -0.02 1.21 16 43 H 0.14 1.40 8.06 -2.91 -0.02 1.37 16 44 H 0.13 1.88 8.06 -2.91 -0.02 1.86 16 Total: -1.00 -68.81 361.37 2.20 -66.61 By element: Atomic # 1 Polarization: 9.36 SS G_CDS: 0.94 Total: 10.30 kcal Atomic # 6 Polarization: -34.80 SS G_CDS: 4.88 Total: -29.93 kcal Atomic # 7 Polarization: -78.65 SS G_CDS: -4.11 Total: -82.76 kcal Atomic # 8 Polarization: -9.39 SS G_CDS: -1.54 Total: -10.93 kcal Atomic # 14 Polarization: 44.67 SS G_CDS: 2.03 Total: 46.70 kcal Total: -68.81 2.20 -66.61 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281268391.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.436 kcal (2) G-P(sol) polarization free energy of solvation -68.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.612 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds