Wall clock time and date at job start Mon Mar 30 2020 02:34:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.32152 * 119.99915 * 2 1 4 4 C 1.32126 * 119.99797 * 180.27318 * 3 2 1 5 5 C 1.38386 * 119.99855 * 359.73745 * 4 3 2 6 6 N 1.32124 * 119.99702 * 359.97438 * 5 4 3 7 7 C 1.32156 * 119.99988 * 0.02562 * 6 5 4 8 8 C 1.50698 * 119.99509 * 179.97438 * 7 6 5 9 9 C 1.53006 * 109.47184 * 89.99945 * 8 7 6 10 10 N 1.46898 * 109.47006 * 179.97438 * 9 8 7 11 11 C 1.46903 * 110.99673 * 179.97438 * 10 9 8 12 12 C 1.53003 * 109.46899 * 179.97438 * 11 10 9 13 13 C 1.53000 * 109.47284 * 300.00454 * 12 11 10 14 14 C 1.53004 * 109.47115 * 60.00585 * 12 11 10 15 15 C 1.52998 * 109.47202 * 180.02562 * 12 11 10 16 16 C 1.50701 * 109.47357 * 180.02562 * 15 12 11 17 17 H 1.07999 * 119.99687 * 0.02562 * 16 15 12 18 18 C 1.37876 * 120.00137 * 180.02562 * 16 15 12 19 19 N 1.31517 * 120.00007 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 119.99960 * 179.97438 * 18 16 15 21 21 H 1.48508 * 109.46806 * 90.00439 * 20 18 16 22 22 H 1.48499 * 109.47352 * 209.99896 * 20 18 16 23 23 H 1.48493 * 109.47395 * 329.99983 * 20 18 16 24 24 H 1.08995 * 109.46906 * 270.24374 * 1 2 3 25 25 H 1.09001 * 109.46795 * 30.24272 * 1 2 3 26 26 H 1.08997 * 109.46833 * 150.24275 * 1 2 3 27 27 H 1.07998 * 119.99650 * 179.75688 * 4 3 2 28 28 H 1.08005 * 120.00212 * 179.97438 * 5 4 3 29 29 H 1.09001 * 109.47612 * 330.00000 * 8 7 6 30 30 H 1.09001 * 109.47122 * 209.99831 * 8 7 6 31 31 H 1.09001 * 109.47002 * 299.99404 * 9 8 7 32 32 H 1.08993 * 109.46955 * 59.99842 * 9 8 7 33 33 H 1.00895 * 111.00438 * 303.95603 * 10 9 8 34 34 H 1.08993 * 109.47323 * 299.99830 * 11 10 9 35 35 H 1.08995 * 109.46831 * 60.00909 * 11 10 9 36 36 H 1.09004 * 109.47066 * 60.00005 * 13 12 11 37 37 H 1.09004 * 109.46990 * 180.02562 * 13 12 11 38 38 H 1.09002 * 109.46764 * 299.99763 * 13 12 11 39 39 H 1.08993 * 109.47147 * 59.99520 * 14 12 11 40 40 H 1.09001 * 109.47495 * 180.02562 * 14 12 11 41 41 H 1.09004 * 109.46784 * 299.99403 * 14 12 11 42 42 H 1.09006 * 109.47316 * 300.00462 * 15 12 11 43 43 H 1.09002 * 109.47225 * 60.00005 * 15 12 11 44 44 H 0.97002 * 120.00059 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.1678 1.1445 0.0000 4 6 3.4891 1.1445 -0.0055 5 6 4.1809 -0.0540 -0.0057 6 7 3.5202 -1.1982 0.0001 7 6 2.1987 -1.1981 0.0055 8 6 1.4452 -2.5031 0.0115 9 6 1.1961 -2.9417 1.4561 10 7 0.4611 -4.2135 1.4619 11 6 0.2041 -4.6667 2.8354 12 6 -0.5619 -5.9907 2.8006 13 6 -1.8924 -5.7912 2.0719 14 6 0.2703 -7.0423 2.0640 15 6 -0.8302 -6.4624 4.2311 16 6 -1.5842 -7.7668 4.1969 17 1 -1.8455 -8.2148 3.2496 18 6 -1.9404 -8.3883 5.3750 19 7 -1.6226 -7.8425 6.5286 20 14 -2.8756 -10.0048 5.3326 21 1 -1.9114 -11.1342 5.3180 22 1 -3.7406 -10.1080 6.5352 23 1 -3.7181 -10.0573 4.1109 24 1 -0.3633 0.0044 1.0276 25 1 -0.3633 0.8878 -0.5176 26 1 -0.3633 -0.8921 -0.5101 27 1 4.0290 2.0798 -0.0094 28 1 5.2610 -0.0541 -0.0106 29 1 2.0321 -3.2640 -0.5031 30 1 0.4906 -2.3739 -0.4986 31 1 2.1507 -3.0710 1.9662 32 1 0.6093 -2.1809 1.9706 33 1 -0.3985 -4.1368 0.9392 34 1 1.1519 -4.8085 3.3546 35 1 -0.3892 -3.9179 3.3600 36 1 -1.7016 -5.4549 1.0528 37 1 -2.4383 -6.7344 2.0476 38 1 -2.4853 -5.0421 2.5968 39 1 1.2181 -7.1844 2.5831 40 1 -0.2755 -7.9854 2.0388 41 1 0.4610 -6.7060 1.0449 42 1 0.1175 -6.6044 4.7507 43 1 -1.4233 -5.7132 4.7556 44 1 -1.8729 -8.2800 7.3574 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000293136451.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:45 Heat of formation + Delta-G solvation = 22.670498 kcal Electronic energy + Delta-G solvation = -21114.597178 eV Core-core repulsion = 18066.087748 eV Total energy + Delta-G solvation = -3048.509429 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.46091 -37.80394 -35.64467 -34.74950 -33.46675 -32.12192 -29.61954 -28.22188 -26.91727 -26.31836 -25.47169 -23.93482 -23.15399 -22.18741 -21.64132 -18.13143 -17.87255 -16.71317 -16.24024 -15.91687 -15.66941 -15.28525 -14.76358 -14.26010 -14.07595 -13.73105 -13.40227 -13.23386 -13.01421 -12.69855 -12.51936 -12.39894 -12.11437 -11.94866 -11.79801 -11.63794 -11.26200 -11.09060 -10.94593 -10.81681 -10.74467 -10.47953 -10.25360 -10.11998 -9.67064 -9.31751 -9.30479 -8.99717 -8.81442 -8.30665 -8.12406 -5.95207 -3.95304 0.48512 0.87389 3.34202 3.37153 3.40734 3.43299 3.71948 3.86310 4.17771 4.31554 4.49433 4.66643 4.78135 4.90989 5.04379 5.08334 5.20905 5.25348 5.38012 5.40653 5.52532 5.63580 5.69228 5.76043 5.92277 5.97538 6.00283 6.16731 6.25988 6.34490 6.51632 6.67581 6.79722 6.84659 7.04109 7.20968 7.22388 7.27774 7.38421 7.54101 7.65512 7.72050 7.86802 8.05179 8.49497 9.10163 9.67476 11.16513 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.040464 B = 0.002776 C = 0.002754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 691.813310 B =10083.873664 C =10163.031623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.082 3.918 3 N -0.440 5.440 4 C 0.044 3.956 5 C 0.044 3.956 6 N -0.431 5.431 7 C 0.091 3.909 8 C -0.070 4.070 9 C 0.068 3.932 10 N -0.685 5.685 11 C 0.071 3.929 12 C -0.058 4.058 13 C -0.129 4.129 14 C -0.116 4.116 15 C 0.033 3.967 16 C -0.506 4.506 17 H 0.059 0.941 18 C 0.054 3.946 19 N -0.898 5.898 20 Si 0.888 3.112 21 H -0.282 1.282 22 H -0.288 1.288 23 H -0.274 1.274 24 H 0.084 0.916 25 H 0.079 0.921 26 H 0.084 0.916 27 H 0.168 0.832 28 H 0.169 0.831 29 H 0.095 0.905 30 H 0.086 0.914 31 H 0.073 0.927 32 H 0.026 0.974 33 H 0.338 0.662 34 H 0.066 0.934 35 H 0.023 0.977 36 H 0.033 0.967 37 H 0.064 0.936 38 H 0.040 0.960 39 H 0.039 0.961 40 H 0.054 0.946 41 H 0.043 0.957 42 H 0.015 0.985 43 H 0.012 0.988 44 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.314 16.620 -14.410 23.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.059 4.059 3 N -0.155 5.155 4 C -0.116 4.116 5 C -0.116 4.116 6 N -0.145 5.145 7 C -0.051 4.051 8 C -0.108 4.108 9 C -0.062 4.062 10 N -0.316 5.316 11 C -0.058 4.058 12 C -0.059 4.059 13 C -0.186 4.186 14 C -0.173 4.173 15 C -0.004 4.004 16 C -0.545 4.545 17 H 0.077 0.923 18 C -0.146 4.146 19 N -0.538 5.538 20 Si 0.716 3.284 21 H -0.208 1.208 22 H -0.214 1.214 23 H -0.199 1.199 24 H 0.103 0.897 25 H 0.098 0.902 26 H 0.103 0.897 27 H 0.185 0.815 28 H 0.186 0.814 29 H 0.114 0.886 30 H 0.104 0.896 31 H 0.091 0.909 32 H 0.044 0.956 33 H 0.157 0.843 34 H 0.084 0.916 35 H 0.042 0.958 36 H 0.052 0.948 37 H 0.083 0.917 38 H 0.059 0.941 39 H 0.058 0.942 40 H 0.073 0.927 41 H 0.062 0.938 42 H 0.033 0.967 43 H 0.031 0.969 44 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 7.866 16.214 -14.286 22.997 hybrid contribution -0.935 -0.097 0.538 1.083 sum 6.931 16.117 -13.748 22.290 Atomic orbital electron populations 1.20811 0.87728 1.04043 1.03813 1.22145 0.98492 0.89022 0.96193 1.68287 1.09016 1.29232 1.09009 1.23739 0.90808 0.99888 0.97176 1.23777 1.01941 0.88781 0.97058 1.68323 1.08265 1.29791 1.08146 1.22097 0.90582 0.96485 0.95912 1.20585 0.99521 0.91910 0.98830 1.21797 0.99356 0.90763 0.94271 1.60527 1.26902 1.28141 1.16074 1.22112 0.99591 0.96791 0.87292 1.20632 0.93576 0.92433 0.99238 1.21773 0.97544 1.01964 0.97351 1.21601 0.98810 0.98571 0.98367 1.19127 0.96645 0.95910 0.88740 1.21238 1.35026 1.06084 0.92106 0.92269 1.25021 0.96346 0.97545 0.95727 1.69969 1.47442 1.39198 0.97188 0.86662 0.79938 0.84397 0.77406 1.20777 1.21415 1.19940 0.89738 0.90190 0.89703 0.81459 0.81390 0.88635 0.89599 0.90880 0.95620 0.84293 0.91557 0.95836 0.94763 0.91688 0.94118 0.94180 0.92704 0.93835 0.96704 0.96933 0.93175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.84 9.79 36.01 0.35 -0.49 16 2 C 0.08 0.86 6.78 -82.41 -0.56 0.30 16 3 N -0.44 -4.76 10.42 -9.29 -0.10 -4.85 16 4 C 0.04 0.37 11.23 -17.37 -0.19 0.18 16 5 C 0.04 0.39 11.23 -17.37 -0.20 0.20 16 6 N -0.43 -5.00 10.42 -9.29 -0.10 -5.10 16 7 C 0.09 1.00 6.04 -82.42 -0.50 0.50 16 8 C -0.07 -0.71 5.38 -27.88 -0.15 -0.86 16 9 C 0.07 0.83 5.67 -3.82 -0.02 0.81 16 10 N -0.68 -9.51 5.71 -113.78 -0.65 -10.16 16 11 C 0.07 1.21 4.65 -3.82 -0.02 1.19 16 12 C -0.06 -1.15 0.60 -154.51 -0.09 -1.24 16 13 C -0.13 -2.33 7.89 37.16 0.29 -2.04 16 14 C -0.12 -2.24 8.06 37.16 0.30 -1.94 16 15 C 0.03 0.84 4.04 -27.88 -0.11 0.72 16 16 C -0.51 -13.81 7.65 -34.44 -0.26 -14.08 16 17 H 0.06 1.57 5.68 -52.49 -0.30 1.27 16 18 C 0.05 1.53 5.46 -17.82 -0.10 1.44 16 19 N -0.90 -26.92 13.29 55.43 0.74 -26.19 16 20 Si 0.89 21.59 29.54 -169.99 -5.02 16.57 16 21 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 22 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 23 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 24 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 25 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.08 0.55 5.95 -51.93 -0.31 0.24 16 27 H 0.17 0.84 8.06 -52.49 -0.42 0.42 16 28 H 0.17 0.92 8.06 -52.48 -0.42 0.50 16 29 H 0.10 1.06 8.14 -51.93 -0.42 0.64 16 30 H 0.09 0.71 5.94 -51.93 -0.31 0.40 16 31 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 32 H 0.03 0.31 8.14 -51.93 -0.42 -0.12 16 33 H 0.34 4.30 6.77 -39.29 -0.27 4.03 16 34 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 35 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 36 H 0.03 0.51 6.57 -51.93 -0.34 0.17 16 37 H 0.06 1.29 6.62 -51.93 -0.34 0.94 16 38 H 0.04 0.73 8.14 -51.93 -0.42 0.30 16 39 H 0.04 0.79 8.14 -51.93 -0.42 0.36 16 40 H 0.05 1.13 6.62 -51.93 -0.34 0.78 16 41 H 0.04 0.75 7.60 -51.93 -0.39 0.35 16 42 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 43 H 0.01 0.34 8.14 -51.93 -0.42 -0.09 16 44 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 LS Contribution 350.90 15.07 5.29 5.29 Total: -1.00 -31.60 350.90 -8.33 -39.93 By element: Atomic # 1 Polarization: 7.06 SS G_CDS: -7.24 Total: -0.17 kcal Atomic # 6 Polarization: -14.06 SS G_CDS: -1.26 Total: -15.32 kcal Atomic # 7 Polarization: -46.19 SS G_CDS: -0.11 Total: -46.30 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -31.60 -8.33 -39.93 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293136451.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.602 kcal (2) G-P(sol) polarization free energy of solvation -31.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.931 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds