Wall clock time and date at job start Mon Mar 30 2020 02:34:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.32152 * 119.99915 * 2 1 4 4 C 1.32126 * 119.99797 * 180.27318 * 3 2 1 5 5 C 1.38386 * 119.99855 * 359.73745 * 4 3 2 6 6 N 1.32124 * 119.99702 * 359.97438 * 5 4 3 7 7 C 1.32156 * 119.99988 * 0.02562 * 6 5 4 8 8 C 1.50698 * 119.99509 * 179.97438 * 7 6 5 9 9 C 1.53006 * 109.47184 * 89.99945 * 8 7 6 10 10 N 1.46898 * 109.47006 * 179.97438 * 9 8 7 11 11 C 1.46903 * 110.99673 * 179.97438 * 10 9 8 12 12 C 1.53003 * 109.46899 * 179.97438 * 11 10 9 13 13 C 1.53000 * 109.47284 * 300.00454 * 12 11 10 14 14 C 1.53004 * 109.47115 * 60.00585 * 12 11 10 15 15 C 1.52998 * 109.47202 * 180.02562 * 12 11 10 16 16 C 1.50701 * 109.47357 * 180.02562 * 15 12 11 17 17 H 1.07999 * 119.99687 * 0.02562 * 16 15 12 18 18 C 1.37876 * 120.00137 * 180.02562 * 16 15 12 19 19 N 1.31517 * 120.00007 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 119.99960 * 179.97438 * 18 16 15 21 21 H 1.48508 * 109.46806 * 90.00439 * 20 18 16 22 22 H 1.48499 * 109.47352 * 209.99896 * 20 18 16 23 23 H 1.48493 * 109.47395 * 329.99983 * 20 18 16 24 24 H 1.08995 * 109.46906 * 270.24374 * 1 2 3 25 25 H 1.09001 * 109.46795 * 30.24272 * 1 2 3 26 26 H 1.08997 * 109.46833 * 150.24275 * 1 2 3 27 27 H 1.07998 * 119.99650 * 179.75688 * 4 3 2 28 28 H 1.08005 * 120.00212 * 179.97438 * 5 4 3 29 29 H 1.09001 * 109.47612 * 330.00000 * 8 7 6 30 30 H 1.09001 * 109.47122 * 209.99831 * 8 7 6 31 31 H 1.09001 * 109.47002 * 299.99404 * 9 8 7 32 32 H 1.08993 * 109.46955 * 59.99842 * 9 8 7 33 33 H 1.00895 * 111.00438 * 303.95603 * 10 9 8 34 34 H 1.08993 * 109.47323 * 299.99830 * 11 10 9 35 35 H 1.08995 * 109.46831 * 60.00909 * 11 10 9 36 36 H 1.09004 * 109.47066 * 60.00005 * 13 12 11 37 37 H 1.09004 * 109.46990 * 180.02562 * 13 12 11 38 38 H 1.09002 * 109.46764 * 299.99763 * 13 12 11 39 39 H 1.08993 * 109.47147 * 59.99520 * 14 12 11 40 40 H 1.09001 * 109.47495 * 180.02562 * 14 12 11 41 41 H 1.09004 * 109.46784 * 299.99403 * 14 12 11 42 42 H 1.09006 * 109.47316 * 300.00462 * 15 12 11 43 43 H 1.09002 * 109.47225 * 60.00005 * 15 12 11 44 44 H 0.97002 * 120.00059 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.1678 1.1445 0.0000 4 6 3.4891 1.1445 -0.0055 5 6 4.1809 -0.0540 -0.0057 6 7 3.5202 -1.1982 0.0001 7 6 2.1987 -1.1981 0.0055 8 6 1.4452 -2.5031 0.0115 9 6 1.1961 -2.9417 1.4561 10 7 0.4611 -4.2135 1.4619 11 6 0.2041 -4.6667 2.8354 12 6 -0.5619 -5.9907 2.8006 13 6 -1.8924 -5.7912 2.0719 14 6 0.2703 -7.0423 2.0640 15 6 -0.8302 -6.4624 4.2311 16 6 -1.5842 -7.7668 4.1969 17 1 -1.8455 -8.2148 3.2496 18 6 -1.9404 -8.3883 5.3750 19 7 -1.6226 -7.8425 6.5286 20 14 -2.8756 -10.0048 5.3326 21 1 -1.9114 -11.1342 5.3180 22 1 -3.7406 -10.1080 6.5352 23 1 -3.7181 -10.0573 4.1109 24 1 -0.3633 0.0044 1.0276 25 1 -0.3633 0.8878 -0.5176 26 1 -0.3633 -0.8921 -0.5101 27 1 4.0290 2.0798 -0.0094 28 1 5.2610 -0.0541 -0.0106 29 1 2.0321 -3.2640 -0.5031 30 1 0.4906 -2.3739 -0.4986 31 1 2.1507 -3.0710 1.9662 32 1 0.6093 -2.1809 1.9706 33 1 -0.3985 -4.1368 0.9392 34 1 1.1519 -4.8085 3.3546 35 1 -0.3892 -3.9179 3.3600 36 1 -1.7016 -5.4549 1.0528 37 1 -2.4383 -6.7344 2.0476 38 1 -2.4853 -5.0421 2.5968 39 1 1.2181 -7.1844 2.5831 40 1 -0.2755 -7.9854 2.0388 41 1 0.4610 -6.7060 1.0449 42 1 0.1175 -6.6044 4.7507 43 1 -1.4233 -5.7132 4.7556 44 1 -1.8729 -8.2800 7.3574 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000293136451.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:45 Heat of formation + Delta-G solvation = 2.058179 kcal Electronic energy + Delta-G solvation = -21115.490995 eV Core-core repulsion = 18066.087748 eV Total energy + Delta-G solvation = -3049.403247 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.17041 -39.25542 -36.78353 -35.49131 -34.82439 -33.81749 -30.61533 -29.04858 -28.70871 -27.85466 -26.79473 -25.24252 -24.00608 -23.63272 -22.56795 -19.50428 -18.85803 -18.31887 -17.39411 -16.94295 -16.63750 -16.45844 -16.10597 -15.58556 -15.30879 -15.03131 -14.55328 -14.31224 -13.93407 -13.87821 -13.83683 -13.64404 -13.45168 -13.02291 -12.97831 -12.72312 -12.66883 -12.57477 -12.45314 -12.22485 -12.13131 -12.02510 -11.85151 -11.82955 -11.34751 -10.84602 -10.74473 -10.49649 -10.02030 -9.97952 -9.30945 -8.13114 -6.20093 -0.20699 0.14333 1.41884 1.42432 1.52958 2.44587 2.65449 2.99365 3.20489 3.20951 3.42257 3.51885 3.85763 4.02034 4.12508 4.20900 4.25108 4.31635 4.41699 4.42856 4.44504 4.59073 4.71531 4.76519 4.78253 4.84256 4.97026 5.00163 5.06920 5.11872 5.18313 5.24795 5.25906 5.50475 5.54106 5.56501 5.61350 5.67662 5.89621 5.94322 6.04652 6.34530 6.37783 6.57806 6.83705 6.95431 7.47336 8.99386 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.040464 B = 0.002776 C = 0.002754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 691.813310 B =10083.873664 C =10163.031623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.072 3.928 3 N -0.464 5.464 4 C 0.047 3.953 5 C 0.040 3.960 6 N -0.461 5.461 7 C 0.073 3.927 8 C -0.059 4.059 9 C 0.075 3.925 10 N -0.679 5.679 11 C 0.083 3.917 12 C -0.055 4.055 13 C -0.122 4.122 14 C -0.108 4.108 15 C 0.039 3.961 16 C -0.512 4.512 17 H 0.068 0.932 18 C -0.006 4.006 19 N -0.940 5.940 20 Si 0.956 3.044 21 H -0.276 1.276 22 H -0.287 1.287 23 H -0.261 1.261 24 H 0.085 0.915 25 H 0.084 0.916 26 H 0.099 0.901 27 H 0.202 0.798 28 H 0.199 0.801 29 H 0.087 0.913 30 H 0.109 0.891 31 H 0.053 0.947 32 H 0.031 0.969 33 H 0.350 0.650 34 H 0.050 0.950 35 H 0.020 0.980 36 H 0.072 0.928 37 H 0.046 0.954 38 H 0.038 0.962 39 H 0.026 0.974 40 H 0.039 0.961 41 H 0.070 0.930 42 H -0.019 1.019 43 H -0.016 1.016 44 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.054 17.170 -16.543 24.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.068 4.068 3 N -0.180 5.180 4 C -0.113 4.113 5 C -0.120 4.120 6 N -0.176 5.176 7 C -0.068 4.068 8 C -0.097 4.097 9 C -0.055 4.055 10 N -0.312 5.312 11 C -0.046 4.046 12 C -0.055 4.055 13 C -0.180 4.180 14 C -0.165 4.165 15 C 0.001 3.999 16 C -0.550 4.550 17 H 0.086 0.914 18 C -0.203 4.203 19 N -0.581 5.581 20 Si 0.782 3.218 21 H -0.202 1.202 22 H -0.213 1.213 23 H -0.185 1.185 24 H 0.103 0.897 25 H 0.102 0.898 26 H 0.118 0.882 27 H 0.219 0.781 28 H 0.216 0.784 29 H 0.105 0.895 30 H 0.127 0.873 31 H 0.072 0.928 32 H 0.049 0.951 33 H 0.170 0.830 34 H 0.069 0.931 35 H 0.038 0.962 36 H 0.091 0.909 37 H 0.065 0.935 38 H 0.057 0.943 39 H 0.045 0.955 40 H 0.058 0.942 41 H 0.089 0.911 42 H -0.001 1.001 43 H 0.003 0.997 44 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 7.591 16.762 -16.448 24.680 hybrid contribution -0.748 -0.166 1.204 1.427 sum 6.843 16.596 -15.244 23.550 Atomic orbital electron populations 1.20881 0.86297 1.05020 1.04106 1.22462 0.99592 0.88807 0.95942 1.68348 1.10198 1.29535 1.09911 1.24330 0.90343 1.01250 0.95381 1.24317 1.03379 0.88222 0.96101 1.68301 1.08862 1.31379 1.09024 1.22160 0.90702 0.96836 0.97098 1.20470 1.00526 0.91491 0.97222 1.21719 0.98127 0.89893 0.95773 1.60412 1.27512 1.29431 1.13830 1.21795 0.98242 0.95429 0.89172 1.20494 0.95329 0.93848 0.95872 1.21691 0.95908 1.01109 0.99249 1.21515 0.97710 0.97687 0.99586 1.19022 0.94130 0.94856 0.91888 1.21630 1.34392 1.06646 0.92372 0.91432 1.25939 0.97526 1.01354 0.95432 1.70116 1.49039 1.41049 0.97905 0.85568 0.78642 0.79816 0.77780 1.20229 1.21316 1.18476 0.89652 0.89754 0.88206 0.78127 0.78440 0.89493 0.87268 0.92804 0.95057 0.82993 0.93130 0.96218 0.90899 0.93485 0.94314 0.95468 0.94188 0.91100 1.00084 0.99733 0.93208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.48 9.79 71.24 0.70 -0.78 16 2 C 0.07 1.40 6.78 42.54 0.29 1.69 16 3 N -0.46 -9.34 10.42 -183.30 -1.91 -11.25 16 4 C 0.05 0.71 11.23 84.68 0.95 1.66 16 5 C 0.04 0.63 11.23 84.68 0.95 1.59 16 6 N -0.46 -10.23 10.42 -183.30 -1.91 -12.14 16 7 C 0.07 1.52 6.04 42.53 0.26 1.77 16 8 C -0.06 -1.10 5.38 29.85 0.16 -0.94 16 9 C 0.07 1.72 5.67 86.31 0.49 2.21 16 10 N -0.68 -17.64 5.71 -513.89 -2.94 -20.57 16 11 C 0.08 2.81 4.65 86.30 0.40 3.21 16 12 C -0.06 -2.16 0.60 -52.18 -0.03 -2.19 16 13 C -0.12 -4.22 7.89 71.98 0.57 -3.65 16 14 C -0.11 -4.06 8.06 71.98 0.58 -3.48 16 15 C 0.04 2.01 4.04 29.85 0.12 2.13 16 16 C -0.51 -28.33 7.65 25.60 0.20 -28.14 16 17 H 0.07 3.56 5.68 -2.91 -0.02 3.55 16 18 C -0.01 -0.35 5.46 84.65 0.46 0.12 16 19 N -0.94 -57.84 13.29 21.45 0.28 -57.56 16 20 Si 0.96 44.49 29.54 68.60 2.03 46.52 16 21 H -0.28 -12.56 7.11 99.48 0.71 -11.86 16 22 H -0.29 -13.24 7.11 99.48 0.71 -12.53 16 23 H -0.26 -11.45 7.11 99.48 0.71 -10.74 16 24 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 25 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 26 H 0.10 1.04 5.95 -2.39 -0.01 1.02 16 27 H 0.20 1.42 8.06 -2.91 -0.02 1.40 16 28 H 0.20 1.70 8.06 -2.91 -0.02 1.68 16 29 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 30 H 0.11 1.49 5.94 -2.39 -0.01 1.47 16 31 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 32 H 0.03 0.70 8.14 -2.39 -0.02 0.68 16 33 H 0.35 7.78 6.77 -89.70 -0.61 7.17 16 34 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 35 H 0.02 0.68 8.14 -2.39 -0.02 0.66 16 36 H 0.07 1.94 6.57 -2.39 -0.02 1.93 16 37 H 0.05 1.79 6.62 -2.39 -0.02 1.77 16 38 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 39 H 0.03 1.06 8.14 -2.39 -0.02 1.04 16 40 H 0.04 1.60 6.62 -2.39 -0.02 1.59 16 41 H 0.07 2.28 7.60 -2.39 -0.02 2.26 16 42 H -0.02 -1.12 8.14 -2.38 -0.02 -1.14 16 43 H -0.02 -0.90 8.14 -2.39 -0.02 -0.91 16 44 H 0.26 15.11 8.31 -92.71 -0.77 14.34 16 Total: -1.00 -69.85 350.90 2.02 -67.83 By element: Atomic # 1 Polarization: 11.60 SS G_CDS: 0.37 Total: 11.98 kcal Atomic # 6 Polarization: -30.90 SS G_CDS: 6.09 Total: -24.81 kcal Atomic # 7 Polarization: -95.05 SS G_CDS: -6.47 Total: -101.52 kcal Atomic # 14 Polarization: 44.49 SS G_CDS: 2.03 Total: 46.52 kcal Total: -69.85 2.02 -67.83 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293136451.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.888 kcal (2) G-P(sol) polarization free energy of solvation -69.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.830 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds