Wall clock time and date at job start Mon Mar 30 2020 02:13:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46901 * 110.99826 * 2 1 4 4 C 1.53007 * 109.46811 * 293.95332 * 3 2 1 5 5 C 1.53008 * 109.46779 * 180.02562 * 4 3 2 6 6 C 1.50700 * 109.46700 * 179.97438 * 5 4 3 7 7 H 1.07995 * 120.00398 * 0.02562 * 6 5 4 8 8 C 1.37881 * 119.99342 * 180.02562 * 6 5 4 9 9 N 1.31510 * 120.00304 * 359.97438 * 8 6 5 10 10 Si 1.86805 * 119.99451 * 180.02562 * 8 6 5 11 11 H 1.48493 * 109.47386 * 59.99878 * 10 8 6 12 12 H 1.48506 * 109.46824 * 179.97438 * 10 8 6 13 13 H 1.48493 * 109.47110 * 299.99392 * 10 8 6 14 14 C 1.46893 * 110.99930 * 123.95269 * 2 1 3 15 15 C 1.53004 * 109.47129 * 66.04545 * 14 2 1 16 16 H 1.08999 * 109.46731 * 304.99711 * 15 14 2 17 17 O 1.42895 * 109.46949 * 65.00305 * 15 14 2 18 18 C 1.53004 * 109.46698 * 184.99943 * 15 14 2 19 19 C 1.50706 * 109.46503 * 174.99880 * 18 15 14 20 20 C 1.38238 * 119.99727 * 90.00317 * 19 18 15 21 21 C 1.38234 * 119.99693 * 180.02562 * 20 19 18 22 22 C 1.38234 * 120.00240 * 359.97438 * 21 20 19 23 23 C 1.38233 * 120.00037 * 0.26327 * 22 21 20 24 24 C 1.38234 * 120.00207 * 270.01808 * 19 18 15 25 25 H 1.08998 * 109.47073 * 296.04925 * 1 2 3 26 26 H 1.09005 * 109.47392 * 56.04607 * 1 2 3 27 27 H 1.08992 * 109.47404 * 176.04575 * 1 2 3 28 28 H 1.09001 * 109.47562 * 53.95211 * 3 2 1 29 29 H 1.08998 * 109.46864 * 173.95563 * 3 2 1 30 30 H 1.08997 * 109.47197 * 299.99805 * 4 3 2 31 31 H 1.08998 * 109.47218 * 60.00447 * 4 3 2 32 32 H 1.09001 * 109.46792 * 300.00236 * 5 4 3 33 33 H 1.09003 * 109.46972 * 59.99647 * 5 4 3 34 34 H 0.97005 * 120.00097 * 180.02562 * 9 8 6 35 35 H 1.09006 * 109.46926 * 306.04548 * 14 2 1 36 36 H 1.09005 * 109.47120 * 186.04926 * 14 2 1 37 37 H 0.96696 * 114.00347 * 59.99810 * 17 15 14 38 38 H 1.09000 * 109.47324 * 55.00469 * 18 15 14 39 39 H 1.08993 * 109.47443 * 294.99673 * 18 15 14 40 40 H 1.07997 * 119.99846 * 359.97438 * 20 19 18 41 41 H 1.07999 * 119.99751 * 179.97438 * 21 20 19 42 42 H 1.08002 * 119.99744 * 179.97438 * 22 21 20 43 43 H 1.07998 * 120.00395 * 179.72811 * 23 22 21 44 44 H 1.07999 * 120.00008 * 0.02562 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6314 2.0574 -1.3184 5 6 2.1802 3.4857 -1.3186 6 6 1.8222 4.1611 -2.6173 7 1 1.2592 3.6254 -3.3673 8 6 2.2135 5.4629 -2.8480 9 7 2.8987 6.1153 -1.9345 10 14 1.7691 6.3004 -4.4576 11 1 0.2919 6.3383 -4.6045 12 1 2.3019 7.6865 -4.4579 13 1 2.3598 5.5423 -5.5896 14 6 1.9954 -0.7659 1.1376 15 6 1.6314 -2.2426 0.9703 16 1 0.5531 -2.3388 0.8433 17 8 2.2956 -2.7696 -0.1799 18 6 2.0699 -3.0198 2.2132 19 6 1.6030 -4.4484 2.1028 20 6 2.4139 -5.3965 1.5074 21 6 1.9853 -6.7068 1.4058 22 6 0.7462 -7.0691 1.8999 23 6 -0.0667 -6.1200 2.4909 24 6 0.3637 -4.8107 2.5967 25 1 -0.3633 0.4513 0.9233 26 1 -0.3634 0.5740 -0.8525 27 1 -0.3634 -1.0251 -0.0709 28 1 1.5611 1.9274 0.8309 29 1 3.0797 1.3444 0.1082 30 1 2.0658 1.5015 -2.1492 31 1 0.5471 2.0845 -1.4266 32 1 1.7462 4.0418 -0.4876 33 1 3.2645 3.4582 -1.2105 34 1 3.1736 7.0313 -2.0967 35 1 1.5610 -0.3871 2.0628 36 1 3.0797 -0.6610 1.1756 37 1 3.2601 -2.7167 -0.1359 38 1 1.6330 -2.5623 3.1008 39 1 3.1569 -2.9978 2.2907 40 1 3.3818 -5.1133 1.1210 41 1 2.6187 -7.4475 0.9402 42 1 0.4113 -8.0928 1.8200 43 1 -1.0366 -6.4022 2.8730 44 1 -0.2700 -4.0698 3.0613 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000293504098.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:40 Heat of formation + Delta-G solvation = -41.591539 kcal Electronic energy + Delta-G solvation = -20720.496197 eV Core-core repulsion = 17636.907406 eV Total energy + Delta-G solvation = -3083.588792 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.72603 -38.30058 -36.35454 -33.59597 -33.01972 -31.43579 -31.08493 -29.46672 -27.12650 -26.67247 -24.44030 -22.78375 -22.34298 -21.17643 -20.92212 -19.82208 -17.13574 -16.40516 -16.27617 -16.10838 -15.30820 -15.24839 -15.13440 -14.68465 -14.48744 -14.11213 -13.62245 -13.49649 -13.30575 -13.02908 -12.65706 -12.28789 -12.09171 -11.73346 -11.61371 -11.49175 -11.41718 -11.23664 -11.17647 -10.82866 -10.73463 -10.56172 -10.50308 -10.07739 -9.57171 -9.29282 -9.11519 -9.04305 -8.81716 -8.30982 -8.00432 -5.96583 -3.98413 1.14857 1.20842 3.36216 3.39916 3.43102 3.55105 4.02629 4.42815 4.49057 4.50659 4.65142 4.78319 4.84621 4.93173 5.01203 5.13125 5.20764 5.30873 5.39035 5.41389 5.47117 5.51167 5.60750 5.66759 5.81152 5.84064 5.86444 5.94298 6.03704 6.20068 6.25325 6.30653 6.35176 6.42576 6.74214 6.79685 6.81480 7.15446 7.35897 7.41780 7.71360 7.71898 7.87153 8.04048 8.47802 9.08604 9.65305 11.14853 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.046653 B = 0.002415 C = 0.002407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 600.032104 B =11590.116455 C =11629.298739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.532 5.532 3 C 0.056 3.944 4 C -0.104 4.104 5 C 0.022 3.978 6 C -0.518 4.518 7 H 0.055 0.945 8 C 0.055 3.945 9 N -0.897 5.897 10 Si 0.892 3.108 11 H -0.277 1.277 12 H -0.288 1.288 13 H -0.276 1.276 14 C 0.022 3.978 15 C 0.118 3.882 16 H 0.098 0.902 17 O -0.542 6.542 18 C -0.116 4.116 19 C -0.071 4.071 20 C -0.104 4.104 21 C -0.120 4.120 22 C -0.128 4.128 23 C -0.121 4.121 24 C -0.120 4.120 25 H 0.019 0.981 26 H 0.076 0.924 27 H 0.062 0.938 28 H 0.027 0.973 29 H 0.067 0.933 30 H 0.056 0.944 31 H 0.047 0.953 32 H 0.012 0.988 33 H 0.015 0.985 34 H 0.260 0.740 35 H 0.037 0.963 36 H 0.076 0.924 37 H 0.369 0.631 38 H 0.080 0.920 39 H 0.077 0.923 40 H 0.120 0.880 41 H 0.120 0.880 42 H 0.118 0.882 43 H 0.119 0.881 44 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.560 -24.286 11.654 27.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.256 5.256 3 C -0.071 4.071 4 C -0.142 4.142 5 C -0.016 4.016 6 C -0.556 4.556 7 H 0.073 0.927 8 C -0.146 4.146 9 N -0.537 5.537 10 Si 0.720 3.280 11 H -0.203 1.203 12 H -0.213 1.213 13 H -0.202 1.202 14 C -0.107 4.107 15 C 0.058 3.942 16 H 0.115 0.885 17 O -0.346 6.346 18 C -0.154 4.154 19 C -0.071 4.071 20 C -0.122 4.122 21 C -0.138 4.138 22 C -0.146 4.146 23 C -0.139 4.139 24 C -0.138 4.138 25 H 0.038 0.962 26 H 0.095 0.905 27 H 0.081 0.919 28 H 0.045 0.955 29 H 0.086 0.914 30 H 0.075 0.925 31 H 0.066 0.934 32 H 0.031 0.969 33 H 0.033 0.967 34 H 0.070 0.930 35 H 0.055 0.945 36 H 0.094 0.906 37 H 0.215 0.785 38 H 0.099 0.901 39 H 0.095 0.905 40 H 0.138 0.862 41 H 0.138 0.862 42 H 0.136 0.864 43 H 0.137 0.863 44 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -2.934 -24.439 11.066 26.988 hybrid contribution 0.041 1.110 0.181 1.125 sum -2.894 -23.330 11.248 26.061 Atomic orbital electron populations 1.22459 0.87962 1.01443 1.00857 1.61983 1.07617 1.14788 1.41186 1.22319 0.99394 0.86227 0.99145 1.21652 1.00053 0.98095 0.94438 1.19072 0.96185 0.89373 0.96920 1.21223 1.34704 0.97617 1.02069 0.92719 1.25033 0.95261 0.97514 0.96753 1.69957 1.38387 1.11323 1.34032 0.86652 0.78747 0.78447 0.84123 1.20281 1.21341 1.20202 1.22866 1.00763 0.94387 0.92709 1.21901 0.97955 0.90018 0.84276 0.88453 1.86640 1.22986 1.83922 1.41073 1.21384 1.01964 0.92400 0.99694 1.19729 0.94536 0.95060 0.97818 1.21009 0.99830 0.92816 0.98529 1.21145 0.96470 0.96364 0.99822 1.21125 0.94769 0.99396 0.99297 1.21111 0.99618 0.93384 0.99743 1.21049 0.95872 0.96378 1.00548 0.96207 0.90515 0.91950 0.95520 0.91416 0.92542 0.93447 0.96915 0.96667 0.93019 0.94476 0.90580 0.78481 0.90119 0.90460 0.86169 0.86231 0.86369 0.86270 0.86284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.30 9.13 60.07 0.55 0.85 16 2 N -0.53 -8.10 4.71 -242.91 -1.14 -9.25 16 3 C 0.06 1.00 4.96 -3.82 -0.02 0.98 16 4 C -0.10 -2.23 5.08 -26.72 -0.14 -2.37 16 5 C 0.02 0.58 4.97 -27.88 -0.14 0.44 16 6 C -0.52 -15.00 9.11 -34.44 -0.31 -15.32 16 7 H 0.05 1.54 7.74 -52.49 -0.41 1.14 16 8 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 9 N -0.90 -27.36 13.29 55.43 0.74 -26.63 16 10 Si 0.89 22.04 29.54 -169.99 -5.02 17.01 16 11 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 12 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 13 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 14 C 0.02 0.25 4.59 -3.83 -0.02 0.24 16 15 C 0.12 1.24 2.91 -26.73 -0.08 1.16 16 16 H 0.10 1.12 6.34 -51.93 -0.33 0.79 16 17 O -0.54 -6.41 12.78 -35.23 -0.45 -6.86 16 18 C -0.12 -0.96 5.03 -27.88 -0.14 -1.10 16 19 C -0.07 -0.67 4.97 -104.62 -0.52 -1.19 16 20 C -0.10 -0.95 9.40 -39.58 -0.37 -1.33 16 21 C -0.12 -1.04 10.05 -39.58 -0.40 -1.44 16 22 C -0.13 -1.07 10.05 -39.58 -0.40 -1.47 16 23 C -0.12 -1.03 10.05 -39.58 -0.40 -1.43 16 24 C -0.12 -1.09 9.70 -39.58 -0.38 -1.48 16 25 H 0.02 0.26 8.14 -51.93 -0.42 -0.16 16 26 H 0.08 1.18 6.30 -51.93 -0.33 0.85 16 27 H 0.06 0.79 6.37 -51.93 -0.33 0.46 16 28 H 0.03 0.48 8.12 -51.93 -0.42 0.05 16 29 H 0.07 1.18 7.93 -51.93 -0.41 0.77 16 30 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 31 H 0.05 1.00 6.47 -51.93 -0.34 0.67 16 32 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.01 0.42 8.14 -51.93 -0.42 -0.01 16 34 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 35 H 0.04 0.42 8.12 -51.93 -0.42 0.00 16 36 H 0.08 0.85 7.93 -51.93 -0.41 0.43 16 37 H 0.37 3.21 9.04 45.56 0.41 3.62 16 38 H 0.08 0.60 8.09 -51.93 -0.42 0.18 16 39 H 0.08 0.55 8.08 -51.93 -0.42 0.13 16 40 H 0.12 0.94 8.06 -52.49 -0.42 0.51 16 41 H 0.12 0.81 8.06 -52.49 -0.42 0.38 16 42 H 0.12 0.75 8.06 -52.49 -0.42 0.33 16 43 H 0.12 0.78 8.06 -52.49 -0.42 0.36 16 44 H 0.12 0.91 8.06 -52.49 -0.42 0.49 16 LS Contribution 358.80 15.07 5.41 5.41 Total: -1.00 -32.48 358.80 -10.10 -42.58 By element: Atomic # 1 Polarization: 6.45 SS G_CDS: -6.76 Total: -0.32 kcal Atomic # 6 Polarization: -19.09 SS G_CDS: -2.86 Total: -21.95 kcal Atomic # 7 Polarization: -35.46 SS G_CDS: -0.41 Total: -35.87 kcal Atomic # 8 Polarization: -6.41 SS G_CDS: -0.45 Total: -6.86 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -32.48 -10.10 -42.58 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293504098.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.990 kcal (2) G-P(sol) polarization free energy of solvation -32.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.582 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds