Wall clock time and date at job start Mon Mar 30 2020 02:13:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46901 * 110.99826 * 2 1 4 4 C 1.53007 * 109.46811 * 293.95332 * 3 2 1 5 5 C 1.53008 * 109.46779 * 180.02562 * 4 3 2 6 6 C 1.50700 * 109.46700 * 179.97438 * 5 4 3 7 7 H 1.07995 * 120.00398 * 0.02562 * 6 5 4 8 8 C 1.37881 * 119.99342 * 180.02562 * 6 5 4 9 9 N 1.31510 * 120.00304 * 359.97438 * 8 6 5 10 10 Si 1.86805 * 119.99451 * 180.02562 * 8 6 5 11 11 H 1.48493 * 109.47386 * 59.99878 * 10 8 6 12 12 H 1.48506 * 109.46824 * 179.97438 * 10 8 6 13 13 H 1.48493 * 109.47110 * 299.99392 * 10 8 6 14 14 C 1.46893 * 110.99930 * 123.95269 * 2 1 3 15 15 C 1.53004 * 109.47129 * 66.04545 * 14 2 1 16 16 H 1.08999 * 109.46731 * 304.99711 * 15 14 2 17 17 O 1.42895 * 109.46949 * 65.00305 * 15 14 2 18 18 C 1.53004 * 109.46698 * 184.99943 * 15 14 2 19 19 C 1.50706 * 109.46503 * 174.99880 * 18 15 14 20 20 C 1.38238 * 119.99727 * 90.00317 * 19 18 15 21 21 C 1.38234 * 119.99693 * 180.02562 * 20 19 18 22 22 C 1.38234 * 120.00240 * 359.97438 * 21 20 19 23 23 C 1.38233 * 120.00037 * 0.26327 * 22 21 20 24 24 C 1.38234 * 120.00207 * 270.01808 * 19 18 15 25 25 H 1.08998 * 109.47073 * 296.04925 * 1 2 3 26 26 H 1.09005 * 109.47392 * 56.04607 * 1 2 3 27 27 H 1.08992 * 109.47404 * 176.04575 * 1 2 3 28 28 H 1.09001 * 109.47562 * 53.95211 * 3 2 1 29 29 H 1.08998 * 109.46864 * 173.95563 * 3 2 1 30 30 H 1.08997 * 109.47197 * 299.99805 * 4 3 2 31 31 H 1.08998 * 109.47218 * 60.00447 * 4 3 2 32 32 H 1.09001 * 109.46792 * 300.00236 * 5 4 3 33 33 H 1.09003 * 109.46972 * 59.99647 * 5 4 3 34 34 H 0.97005 * 120.00097 * 180.02562 * 9 8 6 35 35 H 1.09006 * 109.46926 * 306.04548 * 14 2 1 36 36 H 1.09005 * 109.47120 * 186.04926 * 14 2 1 37 37 H 0.96696 * 114.00347 * 59.99810 * 17 15 14 38 38 H 1.09000 * 109.47324 * 55.00469 * 18 15 14 39 39 H 1.08993 * 109.47443 * 294.99673 * 18 15 14 40 40 H 1.07997 * 119.99846 * 359.97438 * 20 19 18 41 41 H 1.07999 * 119.99751 * 179.97438 * 21 20 19 42 42 H 1.08002 * 119.99744 * 179.97438 * 22 21 20 43 43 H 1.07998 * 120.00395 * 179.72811 * 23 22 21 44 44 H 1.07999 * 120.00008 * 0.02562 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6314 2.0574 -1.3184 5 6 2.1802 3.4857 -1.3186 6 6 1.8222 4.1611 -2.6173 7 1 1.2592 3.6254 -3.3673 8 6 2.2135 5.4629 -2.8480 9 7 2.8987 6.1153 -1.9345 10 14 1.7691 6.3004 -4.4576 11 1 0.2919 6.3383 -4.6045 12 1 2.3019 7.6865 -4.4579 13 1 2.3598 5.5423 -5.5896 14 6 1.9954 -0.7659 1.1376 15 6 1.6314 -2.2426 0.9703 16 1 0.5531 -2.3388 0.8433 17 8 2.2956 -2.7696 -0.1799 18 6 2.0699 -3.0198 2.2132 19 6 1.6030 -4.4484 2.1028 20 6 2.4139 -5.3965 1.5074 21 6 1.9853 -6.7068 1.4058 22 6 0.7462 -7.0691 1.8999 23 6 -0.0667 -6.1200 2.4909 24 6 0.3637 -4.8107 2.5967 25 1 -0.3633 0.4513 0.9233 26 1 -0.3634 0.5740 -0.8525 27 1 -0.3634 -1.0251 -0.0709 28 1 1.5611 1.9274 0.8309 29 1 3.0797 1.3444 0.1082 30 1 2.0658 1.5015 -2.1492 31 1 0.5471 2.0845 -1.4266 32 1 1.7462 4.0418 -0.4876 33 1 3.2645 3.4582 -1.2105 34 1 3.1736 7.0313 -2.0967 35 1 1.5610 -0.3871 2.0628 36 1 3.0797 -0.6610 1.1756 37 1 3.2601 -2.7167 -0.1359 38 1 1.6330 -2.5623 3.1008 39 1 3.1569 -2.9978 2.2907 40 1 3.3818 -5.1133 1.1210 41 1 2.6187 -7.4475 0.9402 42 1 0.4113 -8.0928 1.8200 43 1 -1.0366 -6.4022 2.8730 44 1 -0.2700 -4.0698 3.0613 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000293504098.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:39 Heat of formation + Delta-G solvation = -62.262516 kcal Electronic energy + Delta-G solvation = -20721.392558 eV Core-core repulsion = 17636.907406 eV Total energy + Delta-G solvation = -3084.485152 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.42192 -39.27477 -37.47804 -35.55904 -33.78013 -33.24267 -31.70356 -30.46317 -28.70176 -27.76002 -25.90344 -23.78294 -23.39236 -22.12704 -21.86140 -21.46089 -18.47660 -17.83224 -17.18514 -17.00682 -16.61421 -16.47962 -16.01382 -15.88395 -15.67601 -15.21897 -14.91071 -14.49898 -14.21095 -14.10902 -13.81893 -13.59996 -13.39170 -13.12371 -12.84532 -12.71903 -12.58486 -12.56133 -12.41564 -12.23227 -12.01197 -11.77990 -11.65384 -11.43015 -11.38391 -11.22676 -10.79588 -10.54519 -9.75203 -9.49837 -9.19030 -8.20172 -6.31105 0.50631 0.57125 1.39675 1.43041 1.50966 2.40898 2.82229 3.03869 3.12584 3.64245 3.74351 4.00626 4.05087 4.16760 4.20155 4.25107 4.27602 4.34095 4.36533 4.47420 4.56185 4.66843 4.70324 4.73393 4.74819 4.80295 4.90564 4.94482 5.03321 5.08975 5.16006 5.23691 5.25954 5.26612 5.52194 5.63058 5.68373 5.74478 5.77930 5.85911 6.09488 6.17940 6.20622 6.28652 6.85196 6.99384 7.37829 8.91456 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.046653 B = 0.002415 C = 0.002407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 600.032104 B =11590.116455 C =11629.298739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.543 5.543 3 C 0.068 3.932 4 C -0.090 4.090 5 C 0.027 3.973 6 C -0.544 4.544 7 H 0.057 0.943 8 C -0.001 4.001 9 N -0.933 5.933 10 Si 0.965 3.035 11 H -0.267 1.267 12 H -0.281 1.281 13 H -0.267 1.267 14 C 0.022 3.978 15 C 0.128 3.872 16 H 0.086 0.914 17 O -0.562 6.562 18 C -0.107 4.107 19 C -0.085 4.085 20 C -0.118 4.118 21 C -0.132 4.132 22 C -0.137 4.137 23 C -0.131 4.131 24 C -0.135 4.135 25 H 0.028 0.972 26 H 0.060 0.940 27 H 0.077 0.923 28 H 0.024 0.976 29 H 0.069 0.931 30 H 0.048 0.952 31 H 0.048 0.952 32 H -0.010 1.010 33 H -0.008 1.008 34 H 0.264 0.736 35 H 0.048 0.952 36 H 0.084 0.916 37 H 0.381 0.619 38 H 0.091 0.909 39 H 0.089 0.911 40 H 0.129 0.871 41 H 0.135 0.865 42 H 0.136 0.864 43 H 0.136 0.864 44 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.999 -25.333 11.554 28.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.267 5.267 3 C -0.059 4.059 4 C -0.128 4.128 5 C -0.011 4.011 6 C -0.582 4.582 7 H 0.075 0.925 8 C -0.199 4.199 9 N -0.573 5.573 10 Si 0.790 3.210 11 H -0.192 1.192 12 H -0.207 1.207 13 H -0.192 1.192 14 C -0.106 4.106 15 C 0.069 3.931 16 H 0.104 0.896 17 O -0.368 6.368 18 C -0.145 4.145 19 C -0.085 4.085 20 C -0.136 4.136 21 C -0.150 4.150 22 C -0.155 4.155 23 C -0.149 4.149 24 C -0.153 4.153 25 H 0.047 0.953 26 H 0.078 0.922 27 H 0.096 0.904 28 H 0.043 0.957 29 H 0.087 0.913 30 H 0.067 0.933 31 H 0.066 0.934 32 H 0.009 0.991 33 H 0.011 0.989 34 H 0.073 0.927 35 H 0.066 0.934 36 H 0.102 0.898 37 H 0.229 0.771 38 H 0.109 0.891 39 H 0.108 0.892 40 H 0.147 0.853 41 H 0.153 0.847 42 H 0.154 0.846 43 H 0.154 0.846 44 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -3.372 -25.509 10.975 27.974 hybrid contribution 0.183 1.379 0.242 1.412 sum -3.190 -24.129 11.217 26.800 Atomic orbital electron populations 1.22455 0.87405 1.02216 1.00547 1.61912 1.08270 1.13120 1.43370 1.22028 0.99546 0.87669 0.96676 1.21396 0.99629 0.95272 0.96455 1.18966 0.94688 0.92124 0.95314 1.21658 1.35029 0.98408 1.03099 0.92470 1.25992 0.94942 0.98266 1.00699 1.70085 1.39241 1.11786 1.36198 0.85498 0.78902 0.77320 0.79321 1.19209 1.20656 1.19207 1.22961 1.01207 0.94688 0.91753 1.21778 0.97275 0.89190 0.84896 0.89575 1.86602 1.24264 1.84038 1.41938 1.21287 1.02787 0.91583 0.98799 1.19901 0.94852 0.95559 0.98218 1.21247 1.00408 0.93194 0.98752 1.21438 0.96970 0.96702 0.99917 1.21437 0.94732 1.00402 0.98936 1.21411 1.00465 0.93364 0.99675 1.21306 0.96121 0.97026 1.00801 0.95346 0.92169 0.90426 0.95749 0.91284 0.93294 0.93360 0.99143 0.98917 0.92735 0.93422 0.89780 0.77053 0.89091 0.89212 0.85293 0.84749 0.84589 0.84627 0.85263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.59 9.13 127.69 1.17 1.76 16 2 N -0.54 -15.92 4.71 -922.43 -4.35 -20.26 16 3 C 0.07 2.40 4.96 86.31 0.43 2.83 16 4 C -0.09 -3.87 5.08 30.60 0.16 -3.72 16 5 C 0.03 1.45 4.97 29.85 0.15 1.60 16 6 C -0.54 -31.91 9.11 25.60 0.23 -31.67 16 7 H 0.06 3.24 7.74 -2.91 -0.02 3.22 16 8 C 0.00 -0.08 5.46 84.66 0.46 0.38 16 9 N -0.93 -57.58 13.29 21.45 0.28 -57.30 16 10 Si 0.97 45.08 29.54 68.60 2.03 47.11 16 11 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 12 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 13 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 14 C 0.02 0.48 4.59 86.31 0.40 0.87 16 15 C 0.13 2.46 2.91 30.60 0.09 2.55 16 16 H 0.09 1.85 6.34 -2.39 -0.02 1.84 16 17 O -0.56 -12.50 12.78 -148.98 -1.90 -14.40 16 18 C -0.11 -1.56 5.03 29.85 0.15 -1.41 16 19 C -0.09 -1.48 4.97 -19.86 -0.10 -1.58 16 20 C -0.12 -2.02 9.40 22.27 0.21 -1.81 16 21 C -0.13 -2.13 10.05 22.27 0.22 -1.91 16 22 C -0.14 -2.11 10.05 22.27 0.22 -1.89 16 23 C -0.13 -2.07 10.05 22.27 0.22 -1.84 16 24 C -0.13 -2.27 9.70 22.27 0.22 -2.05 16 25 H 0.03 0.72 8.14 -2.39 -0.02 0.70 16 26 H 0.06 1.82 6.30 -2.38 -0.02 1.81 16 27 H 0.08 1.87 6.37 -2.39 -0.02 1.86 16 28 H 0.02 0.86 8.12 -2.39 -0.02 0.84 16 29 H 0.07 2.39 7.93 -2.39 -0.02 2.37 16 30 H 0.05 2.17 8.14 -2.39 -0.02 2.15 16 31 H 0.05 2.06 6.47 -2.39 -0.02 2.04 16 32 H -0.01 -0.57 8.14 -2.39 -0.02 -0.59 16 33 H -0.01 -0.44 8.14 -2.39 -0.02 -0.46 16 34 H 0.26 15.28 8.31 -92.70 -0.77 14.50 16 35 H 0.05 0.96 8.12 -2.38 -0.02 0.94 16 36 H 0.08 1.70 7.93 -2.38 -0.02 1.68 16 37 H 0.38 6.06 9.04 -74.06 -0.67 5.39 16 38 H 0.09 1.14 8.09 -2.39 -0.02 1.13 16 39 H 0.09 1.08 8.08 -2.39 -0.02 1.07 16 40 H 0.13 1.85 8.06 -2.91 -0.02 1.82 16 41 H 0.13 1.63 8.06 -2.91 -0.02 1.60 16 42 H 0.14 1.49 8.06 -2.91 -0.02 1.46 16 43 H 0.14 1.56 8.06 -2.91 -0.02 1.53 16 44 H 0.13 1.79 8.06 -2.91 -0.02 1.76 16 Total: -1.00 -69.28 358.80 0.58 -68.70 By element: Atomic # 1 Polarization: 13.75 SS G_CDS: 0.29 Total: 14.04 kcal Atomic # 6 Polarization: -42.11 SS G_CDS: 4.23 Total: -37.89 kcal Atomic # 7 Polarization: -73.50 SS G_CDS: -4.06 Total: -77.56 kcal Atomic # 8 Polarization: -12.50 SS G_CDS: -1.90 Total: -14.40 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 2.03 Total: 47.11 kcal Total: -69.28 0.58 -68.70 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293504098.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.441 kcal (2) G-P(sol) polarization free energy of solvation -69.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.703 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds