Wall clock time and date at job start Mon Mar 30 2020 02:13:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46898 * 111.00371 * 2 1 4 4 C 1.53002 * 109.47031 * 66.04973 * 3 2 1 5 5 C 1.52997 * 109.47109 * 180.02562 * 4 3 2 6 6 C 1.50703 * 109.47367 * 179.97438 * 5 4 3 7 7 H 1.08001 * 119.99608 * 359.97438 * 6 5 4 8 8 C 1.37871 * 120.00046 * 179.97438 * 6 5 4 9 9 N 1.31513 * 119.99998 * 0.02562 * 8 6 5 10 10 Si 1.86798 * 119.99740 * 179.97438 * 8 6 5 11 11 H 1.48509 * 109.46848 * 90.00396 * 10 8 6 12 12 H 1.48499 * 109.47467 * 209.99970 * 10 8 6 13 13 H 1.48499 * 109.47282 * 330.00327 * 10 8 6 14 14 C 1.46905 * 110.99741 * 236.04343 * 2 1 3 15 15 C 1.52992 * 109.47439 * 293.95867 * 14 2 1 16 16 H 1.09002 * 109.47443 * 59.99417 * 15 14 2 17 17 O 1.42905 * 109.47242 * 300.00080 * 15 14 2 18 18 C 1.52995 * 109.47245 * 179.97438 * 15 14 2 19 19 C 1.50707 * 109.47301 * 184.99829 * 18 15 14 20 20 C 1.38238 * 119.99792 * 90.00016 * 19 18 15 21 21 C 1.38235 * 119.99712 * 179.97438 * 20 19 18 22 22 C 1.38234 * 120.00220 * 359.97124 * 21 20 19 23 23 C 1.38233 * 120.00037 * 0.28719 * 22 21 20 24 24 C 1.38234 * 120.00179 * 269.97953 * 19 18 15 25 25 H 1.08991 * 109.47378 * 183.95323 * 1 2 3 26 26 H 1.09001 * 109.47103 * 303.95472 * 1 2 3 27 27 H 1.09005 * 109.46984 * 63.94823 * 1 2 3 28 28 H 1.09002 * 109.47274 * 186.04454 * 3 2 1 29 29 H 1.09001 * 109.47093 * 306.04531 * 3 2 1 30 30 H 1.09002 * 109.46667 * 299.99852 * 4 3 2 31 31 H 1.08998 * 109.47082 * 60.00025 * 4 3 2 32 32 H 1.09008 * 109.47104 * 299.99932 * 5 4 3 33 33 H 1.09001 * 109.47065 * 59.99527 * 5 4 3 34 34 H 0.97002 * 119.99361 * 180.02562 * 9 8 6 35 35 H 1.08997 * 109.46848 * 173.95335 * 14 2 1 36 36 H 1.09000 * 109.47005 * 53.96268 * 14 2 1 37 37 H 0.96701 * 113.99180 * 299.99890 * 17 15 14 38 38 H 1.09005 * 109.47610 * 65.00133 * 18 15 14 39 39 H 1.09000 * 109.47256 * 304.99474 * 18 15 14 40 40 H 1.08005 * 120.00068 * 359.97438 * 20 19 18 41 41 H 1.07999 * 119.99770 * 179.97438 * 21 20 19 42 42 H 1.08002 * 119.99744 * 180.02562 * 22 21 20 43 43 H 1.07998 * 120.00395 * 179.72811 * 23 22 21 44 44 H 1.07999 * 119.99968 * 359.97438 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6316 2.0574 1.3183 5 6 2.1794 3.4859 1.3181 6 6 1.8205 4.1618 2.6163 7 1 1.2575 3.6262 3.3663 8 6 2.2108 5.4640 2.8465 9 7 2.8959 6.1164 1.9329 10 14 1.7652 6.3020 4.4554 11 1 2.8413 6.0655 5.4512 12 1 1.6134 7.7616 4.2279 13 1 0.4869 5.7450 4.9662 14 6 1.9954 -0.7661 -1.1376 15 6 1.6313 -2.2426 -0.9704 16 1 0.5470 -2.3475 -0.9323 17 8 2.2007 -2.7393 0.2426 18 6 2.1790 -3.0403 -2.1555 19 6 1.7168 -4.4712 -2.0546 20 6 0.5266 -4.8561 -2.6430 21 6 0.1029 -6.1687 -2.5508 22 6 0.8696 -7.0965 -1.8709 23 6 2.0571 -6.7103 -1.2780 24 6 2.4831 -5.3987 -1.3741 25 1 -0.3633 -1.0251 0.0708 26 1 -0.3633 0.5740 0.8524 27 1 -0.3633 0.4514 -0.9233 28 1 3.0798 1.3443 -0.1082 29 1 1.5612 1.9273 -0.8309 30 1 0.5473 2.0844 1.4265 31 1 2.0660 1.5014 2.1492 32 1 3.2638 3.4592 1.2096 33 1 1.7447 4.0416 0.4872 34 1 3.1707 7.0324 2.0951 35 1 3.0796 -0.6612 -1.1756 36 1 1.5611 -0.3872 -2.0628 37 1 3.1650 -2.6773 0.2785 38 1 3.2685 -3.0087 -2.1424 39 1 1.8140 -2.6054 -3.0860 40 1 -0.0723 -4.1314 -3.1746 41 1 -0.8272 -6.4694 -3.0102 42 1 0.5387 -8.1220 -1.7993 43 1 2.6540 -7.4341 -0.7430 44 1 3.4134 -5.0981 -0.9150 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000293504101.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:43 Heat of formation + Delta-G solvation = -41.759615 kcal Electronic energy + Delta-G solvation = -20725.795542 eV Core-core repulsion = 17642.199462 eV Total energy + Delta-G solvation = -3083.596080 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.72174 -38.29666 -36.33369 -33.58946 -33.01654 -31.43272 -31.08359 -29.47652 -27.11362 -26.66728 -24.44131 -22.78260 -22.34296 -21.17314 -20.90602 -19.82098 -17.13470 -16.38497 -16.27894 -16.11236 -15.29296 -15.24813 -15.12636 -14.67921 -14.48843 -14.12493 -13.61984 -13.47378 -13.29946 -13.03401 -12.64579 -12.29476 -12.09653 -11.72842 -11.63195 -11.47630 -11.39398 -11.23702 -11.17552 -10.82713 -10.74688 -10.54284 -10.50091 -10.06439 -9.57164 -9.29532 -9.11392 -9.03334 -8.81562 -8.31359 -8.00080 -5.96870 -3.98589 1.14981 1.20952 3.34542 3.40352 3.44353 3.55271 4.02487 4.44565 4.49373 4.50797 4.65850 4.78305 4.84135 4.92852 5.01632 5.14070 5.21175 5.30979 5.38925 5.41697 5.47933 5.51438 5.61233 5.67841 5.81130 5.84231 5.87073 5.94177 6.04462 6.20593 6.25416 6.30771 6.35344 6.42766 6.74391 6.79806 6.81611 7.15540 7.36241 7.42281 7.72035 7.72826 7.87059 8.03941 8.47718 9.08673 9.65247 11.14632 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.046789 B = 0.002419 C = 0.002406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 598.284459 B =11570.234240 C =11634.010738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.531 5.531 3 C 0.056 3.944 4 C -0.104 4.104 5 C 0.022 3.978 6 C -0.517 4.517 7 H 0.055 0.945 8 C 0.055 3.945 9 N -0.897 5.897 10 Si 0.892 3.108 11 H -0.280 1.280 12 H -0.287 1.287 13 H -0.274 1.274 14 C 0.021 3.979 15 C 0.119 3.881 16 H 0.096 0.904 17 O -0.541 6.541 18 C -0.116 4.116 19 C -0.071 4.071 20 C -0.121 4.121 21 C -0.121 4.121 22 C -0.128 4.128 23 C -0.120 4.120 24 C -0.104 4.104 25 H 0.062 0.938 26 H 0.076 0.924 27 H 0.019 0.981 28 H 0.067 0.933 29 H 0.026 0.974 30 H 0.047 0.953 31 H 0.056 0.944 32 H 0.015 0.985 33 H 0.013 0.987 34 H 0.260 0.740 35 H 0.075 0.925 36 H 0.037 0.963 37 H 0.369 0.631 38 H 0.077 0.923 39 H 0.080 0.920 40 H 0.119 0.881 41 H 0.119 0.881 42 H 0.118 0.882 43 H 0.120 0.880 44 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.302 -24.359 -11.486 27.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.255 5.255 3 C -0.071 4.071 4 C -0.142 4.142 5 C -0.016 4.016 6 C -0.555 4.555 7 H 0.073 0.927 8 C -0.146 4.146 9 N -0.537 5.537 10 Si 0.720 3.280 11 H -0.207 1.207 12 H -0.213 1.213 13 H -0.199 1.199 14 C -0.108 4.108 15 C 0.059 3.941 16 H 0.114 0.886 17 O -0.345 6.345 18 C -0.154 4.154 19 C -0.071 4.071 20 C -0.139 4.139 21 C -0.139 4.139 22 C -0.146 4.146 23 C -0.138 4.138 24 C -0.122 4.122 25 H 0.081 0.919 26 H 0.094 0.906 27 H 0.037 0.963 28 H 0.086 0.914 29 H 0.045 0.955 30 H 0.066 0.934 31 H 0.075 0.925 32 H 0.033 0.967 33 H 0.031 0.969 34 H 0.069 0.931 35 H 0.094 0.906 36 H 0.055 0.945 37 H 0.216 0.784 38 H 0.096 0.904 39 H 0.099 0.901 40 H 0.137 0.863 41 H 0.137 0.863 42 H 0.136 0.864 43 H 0.138 0.862 44 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -2.697 -24.518 -10.949 26.987 hybrid contribution 0.072 1.117 -0.148 1.129 sum -2.625 -23.401 -11.097 26.032 Atomic orbital electron populations 1.22447 0.87929 1.01476 1.00791 1.61976 1.07656 1.14728 1.41123 1.22320 0.99379 0.86265 0.99140 1.21647 1.00067 0.98073 0.94433 1.19077 0.96185 0.89386 0.96945 1.21260 1.34616 0.97567 1.02074 0.92668 1.25033 0.95294 0.97521 0.96750 1.69971 1.38497 1.11297 1.33934 0.86593 0.78875 0.78577 0.83954 1.20652 1.21289 1.19883 1.22858 1.00744 0.94423 0.92760 1.21873 0.98562 0.90176 0.83490 0.88609 1.86635 1.25009 1.84965 1.37911 1.21381 1.01688 0.92289 1.00074 1.19729 0.94924 0.95086 0.97393 1.21049 0.96214 0.96251 1.00345 1.21109 0.99698 0.93484 0.99582 1.21124 0.95357 0.99468 0.98644 1.21146 0.96726 0.96273 0.99648 1.21012 0.99898 0.92937 0.98324 0.91929 0.90554 0.96261 0.91431 0.95536 0.93447 0.92544 0.96670 0.96906 0.93084 0.90612 0.94484 0.78428 0.90443 0.90128 0.86290 0.86280 0.86374 0.86229 0.86158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.31 9.13 60.06 0.55 0.86 16 2 N -0.53 -8.07 4.63 -242.92 -1.12 -9.19 16 3 C 0.06 0.99 4.96 -3.82 -0.02 0.97 16 4 C -0.10 -2.23 5.08 -26.73 -0.14 -2.36 16 5 C 0.02 0.57 4.97 -27.88 -0.14 0.43 16 6 C -0.52 -14.97 9.11 -34.44 -0.31 -15.28 16 7 H 0.06 1.56 7.74 -52.49 -0.41 1.16 16 8 C 0.05 1.60 5.46 -17.82 -0.10 1.50 16 9 N -0.90 -27.36 13.29 55.43 0.74 -26.62 16 10 Si 0.89 22.03 29.54 -169.99 -5.02 17.01 16 11 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 12 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 13 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 14 C 0.02 0.25 4.62 -3.83 -0.02 0.23 16 15 C 0.12 1.24 2.82 -26.74 -0.08 1.16 16 16 H 0.10 1.09 6.55 -51.93 -0.34 0.75 16 17 O -0.54 -6.41 12.70 -35.23 -0.45 -6.86 16 18 C -0.12 -0.96 5.03 -27.88 -0.14 -1.10 16 19 C -0.07 -0.67 4.97 -104.62 -0.52 -1.19 16 20 C -0.12 -1.09 9.70 -39.58 -0.38 -1.48 16 21 C -0.12 -1.03 10.05 -39.58 -0.40 -1.43 16 22 C -0.13 -1.07 10.05 -39.58 -0.40 -1.47 16 23 C -0.12 -1.04 10.05 -39.58 -0.40 -1.44 16 24 C -0.10 -0.95 9.40 -39.58 -0.37 -1.33 16 25 H 0.06 0.81 6.47 -51.93 -0.34 0.47 16 26 H 0.08 1.18 6.30 -51.93 -0.33 0.85 16 27 H 0.02 0.26 8.14 -51.93 -0.42 -0.17 16 28 H 0.07 1.18 7.93 -51.93 -0.41 0.77 16 29 H 0.03 0.47 8.12 -51.93 -0.42 0.05 16 30 H 0.05 1.00 6.47 -51.93 -0.34 0.67 16 31 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 32 H 0.01 0.42 8.14 -51.92 -0.42 -0.01 16 33 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 35 H 0.08 0.84 7.93 -51.93 -0.41 0.43 16 36 H 0.04 0.42 8.12 -51.93 -0.42 0.00 16 37 H 0.37 3.28 9.05 45.56 0.41 3.69 16 38 H 0.08 0.56 8.09 -51.93 -0.42 0.14 16 39 H 0.08 0.60 8.09 -51.93 -0.42 0.18 16 40 H 0.12 0.90 8.06 -52.48 -0.42 0.48 16 41 H 0.12 0.78 8.06 -52.49 -0.42 0.36 16 42 H 0.12 0.75 8.06 -52.49 -0.42 0.33 16 43 H 0.12 0.81 8.06 -52.49 -0.42 0.39 16 44 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 LS Contribution 358.90 15.07 5.41 5.41 Total: -1.00 -32.43 358.90 -10.09 -42.52 By element: Atomic # 1 Polarization: 6.45 SS G_CDS: -6.78 Total: -0.33 kcal Atomic # 6 Polarization: -19.07 SS G_CDS: -2.86 Total: -21.93 kcal Atomic # 7 Polarization: -35.43 SS G_CDS: -0.39 Total: -35.81 kcal Atomic # 8 Polarization: -6.41 SS G_CDS: -0.45 Total: -6.86 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -32.43 -10.09 -42.52 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293504101.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.756 kcal (2) G-P(sol) polarization free energy of solvation -32.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.515 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds