Wall clock time and date at job start Mon Mar 30 2020 02:05:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46900 * 109.47162 * 2 1 4 4 C 1.46897 * 111.00064 * 297.72791 * 3 2 1 5 5 C 1.50694 * 109.47244 * 287.93248 * 4 3 2 6 6 H 1.07996 * 120.00449 * 4.03491 * 5 4 3 7 7 C 1.37879 * 119.99879 * 184.03464 * 5 4 3 8 8 N 1.31514 * 120.00061 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 120.00043 * 180.02562 * 7 5 4 10 10 H 1.48494 * 109.47113 * 359.97438 * 9 7 5 11 11 H 1.48494 * 109.47377 * 119.99922 * 9 7 5 12 12 H 1.48509 * 109.46668 * 239.99809 * 9 7 5 13 13 C 1.46897 * 110.99695 * 61.68414 * 3 2 1 14 14 C 1.53000 * 109.47097 * 76.86102 * 13 3 2 15 15 H 1.09003 * 109.47675 * 53.13116 * 14 13 3 16 16 C 1.53007 * 109.47290 * 173.13139 * 14 13 3 17 17 C 1.50702 * 109.47272 * 185.00022 * 16 14 13 18 18 C 1.38237 * 119.99495 * 269.72693 * 17 16 14 19 19 C 1.38242 * 119.99337 * 179.76684 * 18 17 16 20 20 C 1.38230 * 120.00102 * 0.50791 * 19 18 17 21 21 C 1.38237 * 120.00121 * 359.74478 * 20 19 18 22 22 C 1.38230 * 120.00082 * 90.00169 * 17 16 14 23 23 O 1.42901 * 109.47198 * 293.13055 * 14 13 3 24 24 C 1.42901 * 113.99784 * 150.00036 * 23 14 13 25 25 H 1.09000 * 109.46327 * 302.97292 * 1 2 3 26 26 H 1.08993 * 109.46966 * 62.97542 * 1 2 3 27 27 H 1.09004 * 109.46613 * 182.97591 * 1 2 3 28 28 H 1.09006 * 109.46973 * 240.00377 * 2 1 3 29 29 H 1.09001 * 109.47581 * 120.00388 * 2 1 3 30 30 H 1.08999 * 109.47282 * 47.93609 * 4 3 2 31 31 H 1.09000 * 109.46806 * 167.93128 * 4 3 2 32 32 H 0.97004 * 119.99831 * 180.02562 * 8 7 5 33 33 H 1.08993 * 109.47509 * 316.86254 * 13 3 2 34 34 H 1.09003 * 109.47012 * 196.85792 * 13 3 2 35 35 H 1.09000 * 109.47059 * 304.99844 * 16 14 13 36 36 H 1.09000 * 109.46806 * 64.99786 * 16 14 13 37 37 H 1.07997 * 120.00347 * 359.97438 * 18 17 16 38 38 H 1.08005 * 119.99814 * 180.23256 * 19 18 17 39 39 H 1.07995 * 119.99971 * 179.72676 * 20 19 18 40 40 H 1.07998 * 119.99889 * 179.97438 * 21 20 19 41 41 H 1.08000 * 119.99790 * 359.97438 * 22 17 16 42 42 H 1.09005 * 109.46697 * 180.02562 * 24 23 14 43 43 H 1.09002 * 109.47291 * 300.00037 * 24 23 14 44 44 H 1.08994 * 109.47167 * 60.00455 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.5936 2.0940 -1.2139 5 6 2.3711 1.5769 -2.3967 6 1 3.0606 0.7552 -2.2723 7 6 2.2020 2.1530 -3.6380 8 7 1.3619 3.1534 -3.7897 9 14 3.1652 1.5116 -5.1043 10 1 4.0359 0.3890 -4.6720 11 1 2.2210 1.0334 -6.1460 12 1 4.0048 2.6029 -5.6606 13 6 1.5818 2.0981 1.2073 14 6 2.4412 1.6634 2.3962 15 1 3.4952 1.7852 2.1466 16 6 2.1022 2.5266 3.6132 17 6 3.0323 2.1824 4.7480 18 6 2.6861 1.1933 5.6495 19 6 3.5414 0.8743 6.6877 20 6 4.7380 1.5515 6.8303 21 6 5.0817 2.5442 5.9317 22 6 4.2288 2.8597 4.8906 23 8 2.1786 0.2914 2.6974 24 6 3.2938 -0.4044 3.2580 25 1 -0.3632 0.5593 0.8622 26 1 -0.3633 0.4669 -0.9154 27 1 -0.3633 -1.0263 0.0534 28 1 1.8933 -0.5138 -0.8901 29 1 1.8934 -0.5139 0.8899 30 1 0.5290 1.9268 -1.3776 31 1 1.7796 3.1615 -1.0953 32 1 1.2427 3.5584 -4.6631 33 1 0.5369 1.8631 1.4093 34 1 1.6899 3.1719 1.0543 35 1 2.2177 3.5794 3.3554 36 1 1.0726 2.3377 3.9172 37 1 1.7490 0.6676 5.5409 38 1 3.2727 0.0989 7.3899 39 1 5.4042 1.3053 7.6438 40 1 6.0164 3.0736 6.0434 41 1 4.4974 3.6352 4.1885 42 1 3.0136 -1.4387 3.4577 43 1 4.1262 -0.3831 2.5546 44 1 3.5922 0.0778 4.1888 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000294908618.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:41 Heat of formation + Delta-G solvation = -16.407469 kcal Electronic energy + Delta-G solvation = -22055.253259 eV Core-core repulsion = 18972.756531 eV Total energy + Delta-G solvation = -3082.496728 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.84261 -38.11846 -36.29287 -33.26922 -32.51854 -31.04182 -30.40540 -28.98616 -26.89749 -26.07213 -24.64700 -23.05224 -22.65776 -21.80667 -20.68900 -19.20597 -16.84783 -16.57298 -16.13588 -15.64697 -15.26916 -15.01210 -14.69466 -14.44303 -14.41449 -13.82687 -13.50301 -13.11725 -12.94227 -12.75820 -12.65637 -12.33246 -11.84981 -11.65548 -11.42067 -11.39098 -11.16169 -11.01857 -10.93129 -10.72216 -10.60961 -10.53760 -10.23254 -10.02978 -9.83388 -9.31565 -9.12442 -8.96684 -8.37732 -8.36209 -7.05675 -5.96907 -3.96765 1.26143 1.30481 3.33982 3.41273 3.46675 3.68046 4.10651 4.46875 4.67179 4.78951 4.89027 5.01291 5.08337 5.32363 5.38093 5.40571 5.44565 5.55280 5.58103 5.67737 5.71823 5.78357 5.91642 5.95779 5.97452 5.99301 6.07428 6.14936 6.27133 6.35328 6.37256 6.39918 6.41653 6.58928 6.75259 6.81967 6.91923 7.11623 7.37723 7.51468 7.54381 7.89431 8.19463 8.35669 8.65125 9.11308 9.66715 11.13851 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.027440 B = 0.003796 C = 0.003654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1020.150745 B = 7374.395402 C = 7660.763903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.055 3.945 3 N -0.532 5.532 4 C 0.186 3.814 5 C -0.498 4.498 6 H 0.062 0.938 7 C 0.053 3.947 8 N -0.901 5.901 9 Si 0.895 3.105 10 H -0.273 1.273 11 H -0.286 1.286 12 H -0.285 1.285 13 C 0.051 3.949 14 C 0.105 3.895 15 H 0.068 0.932 16 C -0.108 4.108 17 C -0.074 4.074 18 C -0.107 4.107 19 C -0.126 4.126 20 C -0.129 4.129 21 C -0.121 4.121 22 C -0.119 4.119 23 O -0.372 6.372 24 C 0.017 3.983 25 H 0.047 0.953 26 H 0.059 0.941 27 H 0.043 0.957 28 H 0.068 0.932 29 H 0.077 0.923 30 H -0.003 1.003 31 H 0.027 0.973 32 H 0.259 0.741 33 H 0.041 0.959 34 H 0.076 0.924 35 H 0.082 0.918 36 H 0.079 0.921 37 H 0.123 0.877 38 H 0.119 0.881 39 H 0.118 0.882 40 H 0.119 0.881 41 H 0.123 0.877 42 H 0.074 0.926 43 H 0.038 0.962 44 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.548 -3.137 20.239 20.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.073 4.073 3 N -0.255 5.255 4 C 0.061 3.939 5 C -0.537 4.537 6 H 0.080 0.920 7 C -0.148 4.148 8 N -0.541 5.541 9 Si 0.723 3.277 10 H -0.197 1.197 11 H -0.212 1.212 12 H -0.211 1.211 13 C -0.078 4.078 14 C 0.046 3.954 15 H 0.086 0.914 16 C -0.146 4.146 17 C -0.074 4.074 18 C -0.125 4.125 19 C -0.144 4.144 20 C -0.147 4.147 21 C -0.139 4.139 22 C -0.137 4.137 23 O -0.290 6.290 24 C -0.080 4.080 25 H 0.066 0.934 26 H 0.078 0.922 27 H 0.062 0.938 28 H 0.087 0.913 29 H 0.095 0.905 30 H 0.015 0.985 31 H 0.045 0.955 32 H 0.069 0.931 33 H 0.059 0.941 34 H 0.095 0.905 35 H 0.100 0.900 36 H 0.097 0.903 37 H 0.141 0.859 38 H 0.137 0.863 39 H 0.136 0.864 40 H 0.137 0.863 41 H 0.141 0.859 42 H 0.093 0.907 43 H 0.057 0.943 44 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 3.823 -3.112 20.047 20.644 hybrid contribution -0.137 -0.104 -0.831 0.848 sum 3.686 -3.216 19.216 19.829 Atomic orbital electron populations 1.22336 0.99903 1.00500 1.01550 1.22163 0.91852 0.91312 1.01997 1.62274 1.59098 1.02132 1.02006 1.19827 0.94547 0.93716 0.85773 1.21205 1.23443 1.16900 0.92172 0.92011 1.24978 0.95674 0.95187 0.98922 1.69969 1.36410 1.24152 1.23597 0.86482 0.79830 0.78802 0.82548 1.19714 1.21205 1.21119 1.22231 0.96791 0.98317 0.90488 1.22198 1.00165 0.81102 0.91900 0.91418 1.21241 0.98822 1.00805 0.93725 1.19939 0.95443 0.95848 0.96205 1.21067 0.99922 0.97171 0.94306 1.21133 0.94756 1.00108 0.98371 1.21106 0.97092 0.96953 0.99521 1.21127 0.99517 0.97967 0.95259 1.21129 0.94105 1.00198 0.98251 1.87907 1.36279 1.22739 1.82107 1.23055 0.90062 0.96805 0.98051 0.93400 0.92157 0.93775 0.91323 0.90457 0.98489 0.95513 0.93125 0.94141 0.90545 0.89957 0.90280 0.85863 0.86296 0.86444 0.86258 0.85949 0.90748 0.94348 0.92924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.49 9.31 37.16 0.35 -3.14 16 2 C 0.05 1.11 5.70 -3.82 -0.02 1.09 16 3 N -0.53 -11.56 4.58 -236.08 -1.08 -12.64 16 4 C 0.19 4.86 4.59 -4.98 -0.02 4.84 16 5 C -0.50 -14.16 8.63 -34.44 -0.30 -14.46 16 6 H 0.06 1.76 7.38 -52.49 -0.39 1.37 16 7 C 0.05 1.52 5.46 -17.82 -0.10 1.42 16 8 N -0.90 -26.97 13.29 55.43 0.74 -26.23 16 9 Si 0.90 21.94 29.54 -169.99 -5.02 16.92 16 10 H -0.27 -6.58 7.11 56.52 0.40 -6.17 16 11 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 12 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 13 C 0.05 0.91 4.70 -3.83 -0.02 0.89 16 14 C 0.10 1.58 2.53 -26.73 -0.07 1.51 16 15 H 0.07 1.10 7.79 -51.93 -0.40 0.69 16 16 C -0.11 -1.33 5.06 -27.88 -0.14 -1.47 16 17 C -0.07 -0.86 3.87 -104.62 -0.41 -1.27 16 18 C -0.11 -1.15 6.83 -39.58 -0.27 -1.42 16 19 C -0.13 -1.21 9.94 -39.58 -0.39 -1.60 16 20 C -0.13 -1.20 10.05 -39.58 -0.40 -1.60 16 21 C -0.12 -1.19 10.05 -39.58 -0.40 -1.59 16 22 C -0.12 -1.31 9.70 -39.59 -0.38 -1.69 16 23 O -0.37 -5.66 7.43 -35.23 -0.26 -5.92 16 24 C 0.02 0.22 10.21 101.05 1.03 1.25 16 25 H 0.05 0.86 6.00 -51.93 -0.31 0.55 16 26 H 0.06 1.28 6.36 -51.93 -0.33 0.95 16 27 H 0.04 0.74 8.14 -51.93 -0.42 0.31 16 28 H 0.07 1.51 7.16 -51.93 -0.37 1.14 16 29 H 0.08 1.46 5.44 -51.93 -0.28 1.17 16 30 H 0.00 -0.07 5.90 -51.93 -0.31 -0.38 16 31 H 0.03 0.75 7.67 -51.93 -0.40 0.35 16 32 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 33 H 0.04 0.73 5.64 -51.93 -0.29 0.43 16 34 H 0.08 1.36 7.62 -51.93 -0.40 0.96 16 35 H 0.08 0.94 8.09 -51.93 -0.42 0.52 16 36 H 0.08 0.95 8.08 -51.93 -0.42 0.53 16 37 H 0.12 1.29 8.06 -52.49 -0.42 0.87 16 38 H 0.12 0.90 8.06 -52.48 -0.42 0.48 16 39 H 0.12 0.84 8.06 -52.49 -0.42 0.42 16 40 H 0.12 0.95 8.06 -52.49 -0.42 0.52 16 41 H 0.12 1.25 8.06 -52.49 -0.42 0.82 16 42 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 43 H 0.04 0.53 8.08 -51.93 -0.42 0.11 16 44 H 0.05 0.64 3.85 -51.93 -0.20 0.44 16 LS Contribution 342.73 15.07 5.16 5.16 Total: -1.00 -30.44 342.73 -9.03 -39.47 By element: Atomic # 1 Polarization: 7.52 SS G_CDS: -7.04 Total: 0.48 kcal Atomic # 6 Polarization: -15.71 SS G_CDS: -1.54 Total: -17.24 kcal Atomic # 7 Polarization: -38.53 SS G_CDS: -0.34 Total: -38.88 kcal Atomic # 8 Polarization: -5.66 SS G_CDS: -0.26 Total: -5.92 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -30.44 -9.03 -39.47 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000294908618.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.065 kcal (2) G-P(sol) polarization free energy of solvation -30.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.472 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds