Wall clock time and date at job start Mon Mar 30 2020 02:05:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46900 * 109.47162 * 2 1 4 4 C 1.46897 * 111.00064 * 297.72791 * 3 2 1 5 5 C 1.50694 * 109.47244 * 287.93248 * 4 3 2 6 6 H 1.07996 * 120.00449 * 4.03491 * 5 4 3 7 7 C 1.37879 * 119.99879 * 184.03464 * 5 4 3 8 8 N 1.31514 * 120.00061 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 120.00043 * 180.02562 * 7 5 4 10 10 H 1.48494 * 109.47113 * 359.97438 * 9 7 5 11 11 H 1.48494 * 109.47377 * 119.99922 * 9 7 5 12 12 H 1.48509 * 109.46668 * 239.99809 * 9 7 5 13 13 C 1.46897 * 110.99695 * 61.68414 * 3 2 1 14 14 C 1.53000 * 109.47097 * 76.86102 * 13 3 2 15 15 H 1.09003 * 109.47675 * 53.13116 * 14 13 3 16 16 C 1.53007 * 109.47290 * 173.13139 * 14 13 3 17 17 C 1.50702 * 109.47272 * 185.00022 * 16 14 13 18 18 C 1.38237 * 119.99495 * 269.72693 * 17 16 14 19 19 C 1.38242 * 119.99337 * 179.76684 * 18 17 16 20 20 C 1.38230 * 120.00102 * 0.50791 * 19 18 17 21 21 C 1.38237 * 120.00121 * 359.74478 * 20 19 18 22 22 C 1.38230 * 120.00082 * 90.00169 * 17 16 14 23 23 O 1.42901 * 109.47198 * 293.13055 * 14 13 3 24 24 C 1.42901 * 113.99784 * 150.00036 * 23 14 13 25 25 H 1.09000 * 109.46327 * 302.97292 * 1 2 3 26 26 H 1.08993 * 109.46966 * 62.97542 * 1 2 3 27 27 H 1.09004 * 109.46613 * 182.97591 * 1 2 3 28 28 H 1.09006 * 109.46973 * 240.00377 * 2 1 3 29 29 H 1.09001 * 109.47581 * 120.00388 * 2 1 3 30 30 H 1.08999 * 109.47282 * 47.93609 * 4 3 2 31 31 H 1.09000 * 109.46806 * 167.93128 * 4 3 2 32 32 H 0.97004 * 119.99831 * 180.02562 * 8 7 5 33 33 H 1.08993 * 109.47509 * 316.86254 * 13 3 2 34 34 H 1.09003 * 109.47012 * 196.85792 * 13 3 2 35 35 H 1.09000 * 109.47059 * 304.99844 * 16 14 13 36 36 H 1.09000 * 109.46806 * 64.99786 * 16 14 13 37 37 H 1.07997 * 120.00347 * 359.97438 * 18 17 16 38 38 H 1.08005 * 119.99814 * 180.23256 * 19 18 17 39 39 H 1.07995 * 119.99971 * 179.72676 * 20 19 18 40 40 H 1.07998 * 119.99889 * 179.97438 * 21 20 19 41 41 H 1.08000 * 119.99790 * 359.97438 * 22 17 16 42 42 H 1.09005 * 109.46697 * 180.02562 * 24 23 14 43 43 H 1.09002 * 109.47291 * 300.00037 * 24 23 14 44 44 H 1.08994 * 109.47167 * 60.00455 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.5936 2.0940 -1.2139 5 6 2.3711 1.5769 -2.3967 6 1 3.0606 0.7552 -2.2723 7 6 2.2020 2.1530 -3.6380 8 7 1.3619 3.1534 -3.7897 9 14 3.1652 1.5116 -5.1043 10 1 4.0359 0.3890 -4.6720 11 1 2.2210 1.0334 -6.1460 12 1 4.0048 2.6029 -5.6606 13 6 1.5818 2.0981 1.2073 14 6 2.4412 1.6634 2.3962 15 1 3.4952 1.7852 2.1466 16 6 2.1022 2.5266 3.6132 17 6 3.0323 2.1824 4.7480 18 6 2.6861 1.1933 5.6495 19 6 3.5414 0.8743 6.6877 20 6 4.7380 1.5515 6.8303 21 6 5.0817 2.5442 5.9317 22 6 4.2288 2.8597 4.8906 23 8 2.1786 0.2914 2.6974 24 6 3.2938 -0.4044 3.2580 25 1 -0.3632 0.5593 0.8622 26 1 -0.3633 0.4669 -0.9154 27 1 -0.3633 -1.0263 0.0534 28 1 1.8933 -0.5138 -0.8901 29 1 1.8934 -0.5139 0.8899 30 1 0.5290 1.9268 -1.3776 31 1 1.7796 3.1615 -1.0953 32 1 1.2427 3.5584 -4.6631 33 1 0.5369 1.8631 1.4093 34 1 1.6899 3.1719 1.0543 35 1 2.2177 3.5794 3.3554 36 1 1.0726 2.3377 3.9172 37 1 1.7490 0.6676 5.5409 38 1 3.2727 0.0989 7.3899 39 1 5.4042 1.3053 7.6438 40 1 6.0164 3.0736 6.0434 41 1 4.4974 3.6352 4.1885 42 1 3.0136 -1.4387 3.4577 43 1 4.1262 -0.3831 2.5546 44 1 3.5922 0.0778 4.1888 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000294908618.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:41 Heat of formation + Delta-G solvation = -33.859449 kcal Electronic energy + Delta-G solvation = -22056.010034 eV Core-core repulsion = 18972.756531 eV Total energy + Delta-G solvation = -3083.253503 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.79086 -39.36635 -37.78589 -34.74787 -34.19045 -31.84793 -31.59175 -30.71095 -28.57834 -27.10534 -26.13421 -24.93618 -23.42056 -23.07679 -21.69392 -20.88258 -18.34307 -17.80023 -17.63297 -16.98177 -16.51576 -16.23018 -16.13778 -15.75547 -15.52579 -15.42282 -14.65161 -14.46985 -14.23527 -13.95044 -13.66553 -13.53175 -13.38320 -13.16785 -13.03049 -12.74740 -12.61305 -12.52837 -12.47597 -12.26198 -11.89027 -11.87417 -11.73681 -11.52498 -11.51813 -11.23674 -10.58246 -10.47771 -9.73981 -9.32065 -8.83577 -8.17032 -6.25828 0.47593 0.53965 1.40386 1.40790 1.54528 2.41687 2.86507 2.96323 3.14455 3.39188 3.82757 4.01321 4.18734 4.21869 4.28440 4.31249 4.37321 4.42941 4.49292 4.55266 4.62948 4.67821 4.70206 4.74516 4.79682 4.81762 4.85993 4.96300 5.01236 5.04867 5.17653 5.22013 5.26504 5.32659 5.39761 5.55939 5.62761 5.67324 5.71896 5.77407 6.12522 6.16588 6.35912 6.49956 6.72391 6.90558 7.42992 8.93471 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.027440 B = 0.003796 C = 0.003654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1020.150745 B = 7374.395402 C = 7660.763903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.058 3.942 3 N -0.540 5.540 4 C 0.202 3.798 5 C -0.516 4.516 6 H 0.056 0.944 7 C 0.001 3.999 8 N -0.935 5.935 9 Si 0.966 3.034 10 H -0.266 1.266 11 H -0.279 1.279 12 H -0.278 1.278 13 C 0.050 3.950 14 C 0.117 3.883 15 H 0.054 0.946 16 C -0.099 4.099 17 C -0.089 4.089 18 C -0.115 4.115 19 C -0.127 4.127 20 C -0.129 4.129 21 C -0.127 4.127 22 C -0.133 4.133 23 O -0.384 6.384 24 C 0.017 3.983 25 H 0.057 0.943 26 H 0.029 0.971 27 H 0.068 0.932 28 H 0.046 0.954 29 H 0.097 0.903 30 H -0.024 1.024 31 H 0.001 0.999 32 H 0.263 0.737 33 H 0.043 0.957 34 H 0.072 0.928 35 H 0.086 0.914 36 H 0.082 0.918 37 H 0.125 0.875 38 H 0.141 0.859 39 H 0.142 0.858 40 H 0.137 0.863 41 H 0.123 0.877 42 H 0.092 0.908 43 H 0.027 0.973 44 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.518 -4.296 21.792 22.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.070 4.070 3 N -0.263 5.263 4 C 0.076 3.924 5 C -0.554 4.554 6 H 0.075 0.925 7 C -0.197 4.197 8 N -0.576 5.576 9 Si 0.791 3.209 10 H -0.190 1.190 11 H -0.205 1.205 12 H -0.204 1.204 13 C -0.079 4.079 14 C 0.059 3.941 15 H 0.072 0.928 16 C -0.137 4.137 17 C -0.089 4.089 18 C -0.133 4.133 19 C -0.145 4.145 20 C -0.147 4.147 21 C -0.145 4.145 22 C -0.151 4.151 23 O -0.303 6.303 24 C -0.079 4.079 25 H 0.076 0.924 26 H 0.048 0.952 27 H 0.087 0.913 28 H 0.064 0.936 29 H 0.115 0.885 30 H -0.007 1.007 31 H 0.019 0.981 32 H 0.072 0.928 33 H 0.061 0.939 34 H 0.090 0.910 35 H 0.105 0.895 36 H 0.101 0.899 37 H 0.143 0.857 38 H 0.159 0.841 39 H 0.160 0.840 40 H 0.155 0.845 41 H 0.141 0.859 42 H 0.110 0.890 43 H 0.046 0.954 44 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 4.796 -4.279 21.623 22.558 hybrid contribution -0.428 0.243 -1.217 1.313 sum 4.368 -4.036 20.406 21.255 Atomic orbital electron populations 1.22216 0.98773 1.01902 1.00340 1.22155 0.92760 0.90277 1.01765 1.62204 1.59532 1.02817 1.01750 1.19477 0.92994 0.92510 0.87441 1.21482 1.23622 1.16915 0.93408 0.92544 1.25861 0.96591 0.95297 1.01920 1.70087 1.37716 1.25258 1.24529 0.85389 0.78461 0.78408 0.78687 1.18995 1.20456 1.20357 1.22312 0.97607 0.97900 0.90036 1.21941 0.98439 0.81889 0.91850 0.92765 1.21096 0.99334 1.00381 0.92853 1.19882 0.95689 0.96912 0.96445 1.21161 1.00360 0.97086 0.94669 1.21425 0.94531 1.00403 0.98170 1.21453 0.97275 0.96201 0.99762 1.21404 0.99998 0.98228 0.94868 1.21280 0.94354 1.00529 0.98973 1.87847 1.37325 1.22694 1.82445 1.23165 0.89085 0.97618 0.98049 0.92419 0.95189 0.91267 0.93583 0.88474 1.00660 0.98130 0.92815 0.93875 0.90980 0.89506 0.89946 0.85723 0.84142 0.84039 0.84513 0.85903 0.88953 0.95449 0.91847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -6.55 9.31 71.98 0.67 -5.88 16 2 C 0.06 2.37 5.70 86.30 0.49 2.86 16 3 N -0.54 -24.01 4.58 -900.82 -4.12 -28.13 16 4 C 0.20 10.96 4.59 85.56 0.39 11.35 16 5 C -0.52 -30.03 8.63 25.60 0.22 -29.81 16 6 H 0.06 3.28 7.38 -2.91 -0.02 3.25 16 7 C 0.00 0.05 5.46 84.66 0.46 0.51 16 8 N -0.93 -57.06 13.29 21.45 0.28 -56.78 16 9 Si 0.97 45.32 29.54 68.60 2.03 47.35 16 10 H -0.27 -12.07 7.11 99.48 0.71 -11.37 16 11 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 12 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 13 C 0.05 1.82 4.70 86.30 0.41 2.22 16 14 C 0.12 3.50 2.53 30.60 0.08 3.58 16 15 H 0.05 1.77 7.79 -2.39 -0.02 1.75 16 16 C -0.10 -2.37 5.06 29.85 0.15 -2.22 16 17 C -0.09 -1.96 3.87 -19.87 -0.08 -2.04 16 18 C -0.11 -2.26 6.83 22.27 0.15 -2.11 16 19 C -0.13 -2.10 9.94 22.27 0.22 -1.88 16 20 C -0.13 -2.04 10.05 22.27 0.22 -1.81 16 21 C -0.13 -2.24 10.05 22.27 0.22 -2.02 16 22 C -0.13 -2.79 9.70 22.27 0.22 -2.57 16 23 O -0.38 -11.23 7.43 -148.98 -1.11 -12.34 16 24 C 0.02 0.41 10.21 113.37 1.16 1.56 16 25 H 0.06 2.04 6.00 -2.39 -0.01 2.03 16 26 H 0.03 1.29 6.36 -2.39 -0.02 1.28 16 27 H 0.07 2.23 8.14 -2.38 -0.02 2.21 16 28 H 0.05 2.06 7.16 -2.38 -0.02 2.04 16 29 H 0.10 3.57 5.44 -2.39 -0.01 3.56 16 30 H -0.02 -1.40 5.90 -2.39 -0.01 -1.41 16 31 H 0.00 0.03 7.67 -2.39 -0.02 0.02 16 32 H 0.26 15.06 8.31 -92.71 -0.77 14.29 16 33 H 0.04 1.55 5.64 -2.39 -0.01 1.54 16 34 H 0.07 2.66 7.62 -2.39 -0.02 2.64 16 35 H 0.09 1.96 8.09 -2.39 -0.02 1.95 16 36 H 0.08 1.91 8.08 -2.39 -0.02 1.89 16 37 H 0.12 2.37 8.06 -2.91 -0.02 2.35 16 38 H 0.14 1.66 8.06 -2.91 -0.02 1.63 16 39 H 0.14 1.52 8.06 -2.91 -0.02 1.49 16 40 H 0.14 1.85 8.06 -2.91 -0.02 1.83 16 41 H 0.12 2.45 8.06 -2.91 -0.02 2.43 16 42 H 0.09 1.90 8.14 -2.38 -0.02 1.89 16 43 H 0.03 0.72 8.08 -2.39 -0.02 0.70 16 44 H 0.06 1.42 3.85 -2.39 -0.01 1.41 16 Total: -1.00 -65.79 342.73 3.03 -62.76 By element: Atomic # 1 Polarization: 14.44 SS G_CDS: 0.96 Total: 15.41 kcal Atomic # 6 Polarization: -33.25 SS G_CDS: 4.99 Total: -28.26 kcal Atomic # 7 Polarization: -81.08 SS G_CDS: -3.84 Total: -84.91 kcal Atomic # 8 Polarization: -11.23 SS G_CDS: -1.11 Total: -12.34 kcal Atomic # 14 Polarization: 45.32 SS G_CDS: 2.03 Total: 47.35 kcal Total: -65.79 3.03 -62.76 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000294908618.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.896 kcal (2) G-P(sol) polarization free energy of solvation -65.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.755 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds