Wall clock time and date at job start Mon Mar 30 2020 01:47:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42902 * 113.99611 * 2 1 4 4 H 1.08997 * 109.47189 * 30.00294 * 3 2 1 5 5 C 1.52998 * 109.47189 * 269.99938 * 3 2 1 6 6 C 1.50695 * 109.47362 * 65.00205 * 5 3 2 7 7 C 1.38235 * 120.00034 * 269.73065 * 6 5 3 8 8 C 1.38244 * 119.99960 * 179.76276 * 7 6 5 9 9 C 1.38233 * 119.99686 * 0.50346 * 8 7 6 10 10 C 1.38237 * 120.00151 * 359.74928 * 9 8 7 11 11 C 1.38231 * 120.00079 * 0.02562 * 10 9 8 12 12 C 1.53004 * 109.46966 * 150.00170 * 3 2 1 13 13 N 1.46900 * 109.46955 * 295.59644 * 12 3 2 14 14 C 1.46904 * 110.99791 * 77.52026 * 13 12 3 15 15 C 1.46896 * 111.00054 * 201.47394 * 13 12 3 16 16 H 1.09005 * 109.47306 * 300.00289 * 15 13 12 17 17 C 1.52996 * 109.47198 * 60.00286 * 15 13 12 18 18 C 1.50697 * 109.47381 * 180.02562 * 15 13 12 19 19 H 1.08000 * 119.99850 * 359.97438 * 18 15 13 20 20 C 1.37880 * 120.00527 * 179.97438 * 18 15 13 21 21 N 1.31514 * 119.99475 * 0.02562 * 20 18 15 22 22 Si 1.86795 * 120.00207 * 179.97438 * 20 18 15 23 23 H 1.48496 * 109.47278 * 0.02562 * 22 20 18 24 24 H 1.48499 * 109.46805 * 120.00447 * 22 20 18 25 25 H 1.48496 * 109.47053 * 240.00219 * 22 20 18 26 26 H 1.09004 * 109.47698 * 60.00251 * 1 2 3 27 27 H 1.09002 * 109.47402 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47415 * 299.99577 * 1 2 3 29 29 H 1.09002 * 109.46958 * 305.00021 * 5 3 2 30 30 H 1.09000 * 109.47350 * 185.00444 * 5 3 2 31 31 H 1.07997 * 119.99874 * 359.97438 * 7 6 5 32 32 H 1.07998 * 120.00051 * 180.22903 * 8 7 6 33 33 H 1.08001 * 119.99585 * 179.72296 * 9 8 7 34 34 H 1.07999 * 119.99633 * 179.97438 * 10 9 8 35 35 H 1.07995 * 120.00077 * 179.97438 * 11 10 9 36 36 H 1.08999 * 109.47194 * 55.59456 * 12 3 2 37 37 H 1.08997 * 109.47346 * 175.59700 * 12 3 2 38 38 H 1.09003 * 109.46915 * 52.90374 * 14 13 12 39 39 H 1.09006 * 109.46972 * 172.89692 * 14 13 12 40 40 H 1.08991 * 109.47348 * 292.90145 * 14 13 12 41 41 H 1.09003 * 109.46734 * 299.99975 * 17 15 13 42 42 H 1.08994 * 109.47340 * 59.99575 * 17 15 13 43 43 H 1.09003 * 109.47516 * 180.02562 * 17 15 13 44 44 H 0.97006 * 120.00097 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 1 1.3448 1.9994 0.5139 5 6 2.2175 1.7714 -1.4425 6 6 0.8791 1.9310 -2.1163 7 6 0.3139 0.8655 -2.7917 8 6 -0.9162 1.0104 -3.4057 9 6 -1.5762 2.2238 -3.3529 10 6 -1.0086 3.2908 -2.6819 11 6 0.2192 3.1446 -2.0641 12 6 3.3588 1.2634 0.7212 13 7 3.1483 0.9182 2.1335 14 6 2.9004 -0.5210 2.2924 15 6 4.2858 1.3504 2.9563 16 1 5.1940 0.8585 2.6079 17 6 4.4512 2.8671 2.8415 18 6 4.0346 0.9797 4.3952 19 1 3.1211 0.4739 4.6709 20 6 4.9711 1.2861 5.3598 21 7 6.0832 1.9024 5.0240 22 14 4.6593 0.8271 7.1434 23 1 3.3442 0.1470 7.2569 24 1 5.7310 -0.0869 7.6138 25 1 4.6553 2.0558 7.9773 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 2.8099 1.0320 -1.9815 30 1 2.7412 2.7274 -1.4438 31 1 0.8318 -0.0811 -2.8369 32 1 -1.3594 0.1769 -3.9302 33 1 -2.5352 2.3383 -3.8364 34 1 -1.5242 4.2389 -2.6411 35 1 0.6628 3.9783 -1.5402 36 1 3.9969 0.5126 0.2550 37 1 3.8378 2.2401 0.6535 38 1 3.6988 -1.0829 1.8075 39 1 2.8733 -0.7701 3.3532 40 1 1.9454 -0.7780 1.8343 41 1 4.6331 3.1349 1.8006 42 1 3.5431 3.3590 3.1898 43 1 5.2955 3.1878 3.4516 44 1 6.7420 2.1184 5.7026 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000296712644.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:47:56 Heat of formation + Delta-G solvation = -11.761683 kcal Electronic energy + Delta-G solvation = -22095.555865 eV Core-core repulsion = 19013.260593 eV Total energy + Delta-G solvation = -3082.295272 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.82161 -38.00376 -36.24150 -33.29724 -32.61819 -31.03055 -30.08783 -28.94669 -26.48596 -26.05486 -24.62089 -23.37146 -22.65528 -21.57868 -20.64962 -19.26858 -16.84770 -16.52388 -16.19618 -15.62064 -15.32068 -14.96968 -14.81803 -14.47502 -13.82854 -13.65537 -13.50048 -13.04218 -12.92712 -12.73023 -12.50866 -12.24375 -11.87972 -11.78720 -11.35287 -11.14293 -10.99416 -10.93013 -10.87466 -10.60037 -10.49796 -10.39640 -10.08779 -9.95310 -9.84762 -9.38135 -8.97014 -8.81902 -8.38873 -8.36467 -7.05558 -5.97799 -4.01308 1.26430 1.30708 3.31780 3.39482 3.44393 3.68336 4.13828 4.43663 4.67700 4.79237 4.89304 5.01920 5.09747 5.32932 5.34022 5.41233 5.45297 5.56358 5.62744 5.69771 5.73845 5.80824 5.93187 5.97056 5.98466 6.13392 6.18183 6.37046 6.41313 6.42071 6.55830 6.59987 6.65048 6.89097 6.92087 7.05852 7.08522 7.22598 7.56329 7.59356 7.79744 7.87719 8.28375 8.40391 8.68137 9.06324 9.63396 11.09261 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.034276 B = 0.003693 C = 0.003577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 816.710205 B = 7579.976840 C = 7825.186995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.372 6.372 3 C 0.106 3.894 4 H 0.067 0.933 5 C -0.108 4.108 6 C -0.074 4.074 7 C -0.107 4.107 8 C -0.125 4.125 9 C -0.129 4.129 10 C -0.121 4.121 11 C -0.119 4.119 12 C 0.051 3.949 13 N -0.534 5.534 14 C 0.036 3.964 15 C 0.209 3.791 16 H -0.004 1.004 17 C -0.133 4.133 18 C -0.499 4.499 19 H 0.064 0.936 20 C 0.057 3.943 21 N -0.895 5.895 22 Si 0.895 3.105 23 H -0.273 1.273 24 H -0.286 1.286 25 H -0.285 1.285 26 H 0.052 0.948 27 H 0.074 0.926 28 H 0.037 0.963 29 H 0.079 0.921 30 H 0.082 0.918 31 H 0.123 0.877 32 H 0.119 0.881 33 H 0.118 0.882 34 H 0.119 0.881 35 H 0.122 0.878 36 H 0.030 0.970 37 H 0.085 0.915 38 H 0.004 0.996 39 H 0.070 0.930 40 H 0.063 0.937 41 H 0.008 0.992 42 H 0.034 0.966 43 H 0.085 0.915 44 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.121 0.476 -16.061 20.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.291 6.291 3 C 0.047 3.953 4 H 0.085 0.915 5 C -0.146 4.146 6 C -0.074 4.074 7 C -0.125 4.125 8 C -0.143 4.143 9 C -0.147 4.147 10 C -0.139 4.139 11 C -0.137 4.137 12 C -0.078 4.078 13 N -0.258 5.258 14 C -0.113 4.113 15 C 0.103 3.897 16 H 0.014 0.986 17 C -0.191 4.191 18 C -0.538 4.538 19 H 0.082 0.918 20 C -0.144 4.144 21 N -0.534 5.534 22 Si 0.724 3.276 23 H -0.198 1.198 24 H -0.212 1.212 25 H -0.211 1.211 26 H 0.070 0.930 27 H 0.092 0.908 28 H 0.056 0.944 29 H 0.097 0.903 30 H 0.100 0.900 31 H 0.141 0.859 32 H 0.137 0.863 33 H 0.136 0.864 34 H 0.137 0.863 35 H 0.140 0.860 36 H 0.048 0.952 37 H 0.103 0.897 38 H 0.022 0.978 39 H 0.089 0.911 40 H 0.081 0.919 41 H 0.027 0.973 42 H 0.053 0.947 43 H 0.103 0.897 44 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -12.246 0.624 -15.787 19.990 hybrid contribution 0.413 -0.395 0.677 0.886 sum -11.834 0.230 -15.110 19.193 Atomic orbital electron populations 1.23043 0.82310 1.01939 1.00602 1.87927 1.18810 1.27749 1.94583 1.22192 0.96088 0.84941 0.92061 0.91537 1.21243 0.93718 1.02759 0.96908 1.19942 0.96744 0.93516 0.97211 1.21071 0.95682 0.98664 0.97041 1.21135 0.95476 0.97561 1.00177 1.21106 0.99956 0.93456 1.00163 1.21123 0.95771 0.98826 0.98158 1.21123 0.95432 0.97320 0.99834 1.22275 0.93511 1.01310 0.90698 1.62041 1.43586 1.15733 1.04487 1.22392 0.99190 0.87882 1.01796 1.19257 0.86201 0.92323 0.91935 0.98599 1.21877 1.02113 0.98146 0.96989 1.21210 1.04020 1.37118 0.91449 0.91789 1.24937 0.95120 0.95324 0.98981 1.69905 1.08665 1.41514 1.33335 0.86477 0.78151 0.78093 0.84910 1.19755 1.21197 1.21077 0.92992 0.90774 0.94396 0.90271 0.89987 0.85856 0.86285 0.86439 0.86261 0.85974 0.95196 0.89654 0.97767 0.91149 0.91878 0.97326 0.94731 0.89674 0.93124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 10.22 101.05 1.03 1.27 16 2 O -0.37 -5.89 7.47 -35.23 -0.26 -6.15 16 3 C 0.11 1.64 2.55 -26.73 -0.07 1.57 16 4 H 0.07 1.09 7.79 -51.93 -0.40 0.69 16 5 C -0.11 -1.36 5.06 -27.89 -0.14 -1.51 16 6 C -0.07 -0.87 3.87 -104.63 -0.41 -1.28 16 7 C -0.11 -1.17 6.83 -39.58 -0.27 -1.44 16 8 C -0.13 -1.22 9.94 -39.58 -0.39 -1.61 16 9 C -0.13 -1.21 10.05 -39.58 -0.40 -1.61 16 10 C -0.12 -1.20 10.05 -39.58 -0.40 -1.59 16 11 C -0.12 -1.32 9.70 -39.58 -0.38 -1.70 16 12 C 0.05 0.94 4.70 -3.82 -0.02 0.93 16 13 N -0.53 -11.84 4.54 -236.29 -1.07 -12.91 16 14 C 0.04 0.76 8.97 60.07 0.54 1.30 16 15 C 0.21 5.37 2.06 -68.87 -0.14 5.22 16 16 H 0.00 -0.10 8.14 -51.93 -0.42 -0.52 16 17 C -0.13 -3.26 8.82 37.16 0.33 -2.93 16 18 C -0.50 -13.88 7.78 -34.44 -0.27 -14.15 16 19 H 0.06 1.79 6.46 -52.49 -0.34 1.45 16 20 C 0.06 1.59 5.30 -17.82 -0.09 1.50 16 21 N -0.89 -25.73 11.32 55.43 0.63 -25.10 16 22 Si 0.90 21.56 29.54 -169.99 -5.02 16.54 16 23 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 24 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 25 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 26 H 0.05 0.64 3.85 -51.93 -0.20 0.44 16 27 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 28 H 0.04 0.53 8.08 -51.93 -0.42 0.11 16 29 H 0.08 0.98 8.08 -51.93 -0.42 0.56 16 30 H 0.08 0.95 8.09 -51.93 -0.42 0.53 16 31 H 0.12 1.32 8.06 -52.49 -0.42 0.90 16 32 H 0.12 0.92 8.06 -52.49 -0.42 0.50 16 33 H 0.12 0.85 8.06 -52.49 -0.42 0.43 16 34 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 35 H 0.12 1.24 8.06 -52.49 -0.42 0.82 16 36 H 0.03 0.57 7.82 -51.93 -0.41 0.16 16 37 H 0.09 1.56 5.51 -51.93 -0.29 1.27 16 38 H 0.00 0.08 7.92 -51.93 -0.41 -0.33 16 39 H 0.07 1.60 5.91 -51.93 -0.31 1.29 16 40 H 0.06 1.23 5.83 -51.93 -0.30 0.93 16 41 H 0.01 0.17 6.02 -51.93 -0.31 -0.14 16 42 H 0.03 0.83 8.14 -51.93 -0.42 0.41 16 43 H 0.08 2.28 6.07 -51.93 -0.32 1.96 16 44 H 0.26 7.08 8.31 -40.82 -0.34 6.75 16 LS Contribution 340.56 15.07 5.13 5.13 Total: -1.00 -29.56 340.56 -8.74 -38.30 By element: Atomic # 1 Polarization: 7.30 SS G_CDS: -7.06 Total: 0.24 kcal Atomic # 6 Polarization: -14.96 SS G_CDS: -1.08 Total: -16.04 kcal Atomic # 7 Polarization: -37.57 SS G_CDS: -0.45 Total: -38.01 kcal Atomic # 8 Polarization: -5.89 SS G_CDS: -0.26 Total: -6.15 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -29.56 -8.74 -38.30 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000296712644.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.537 kcal (2) G-P(sol) polarization free energy of solvation -29.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.299 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds