Wall clock time and date at job start Mon Mar 30 2020 01:47:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42895 * 113.99971 * 2 1 4 4 H 1.08999 * 109.47352 * 32.44650 * 3 2 1 5 5 C 1.52998 * 109.47376 * 152.44672 * 3 2 1 6 6 C 1.50698 * 109.47219 * 295.00111 * 5 3 2 7 7 C 1.38236 * 119.99725 * 269.72540 * 6 5 3 8 8 C 1.38234 * 119.99769 * 179.76558 * 7 6 5 9 9 C 1.38246 * 119.99905 * 0.50787 * 8 7 6 10 10 C 1.38238 * 119.99698 * 359.74359 * 9 8 7 11 11 C 1.38232 * 120.00373 * 0.02562 * 10 9 8 12 12 C 1.53005 * 109.47161 * 272.44971 * 3 2 1 13 13 N 1.46901 * 109.47149 * 174.61792 * 12 3 2 14 14 C 1.46898 * 111.00013 * 288.48544 * 13 12 3 15 15 C 1.46902 * 110.99729 * 164.53864 * 13 12 3 16 16 H 1.08993 * 109.47736 * 59.99685 * 15 13 12 17 17 C 1.53009 * 109.46898 * 299.99502 * 15 13 12 18 18 C 1.50698 * 109.46882 * 180.02562 * 15 13 12 19 19 H 1.08000 * 120.00425 * 359.97438 * 18 15 13 20 20 C 1.37875 * 119.99882 * 179.97438 * 18 15 13 21 21 N 1.31512 * 120.00263 * 359.97438 * 20 18 15 22 22 Si 1.86808 * 119.99786 * 179.97438 * 20 18 15 23 23 H 1.48490 * 109.47242 * 359.97438 * 22 20 18 24 24 H 1.48494 * 109.46907 * 120.00134 * 22 20 18 25 25 H 1.48505 * 109.46844 * 239.99816 * 22 20 18 26 26 H 1.09007 * 109.47180 * 304.41827 * 1 2 3 27 27 H 1.09000 * 109.47626 * 64.42407 * 1 2 3 28 28 H 1.09000 * 109.47137 * 184.42292 * 1 2 3 29 29 H 1.09003 * 109.46662 * 55.00133 * 5 3 2 30 30 H 1.09007 * 109.47314 * 174.99531 * 5 3 2 31 31 H 1.07992 * 120.00013 * 359.97438 * 7 6 5 32 32 H 1.07996 * 120.00286 * 180.22858 * 8 7 6 33 33 H 1.07998 * 119.99620 * 179.72442 * 9 8 7 34 34 H 1.07999 * 119.99793 * 179.97438 * 10 9 8 35 35 H 1.07999 * 120.00166 * 179.97438 * 11 10 9 36 36 H 1.09003 * 109.46694 * 294.61615 * 12 3 2 37 37 H 1.08999 * 109.47270 * 54.61668 * 12 3 2 38 38 H 1.09007 * 109.46701 * 61.82323 * 14 13 12 39 39 H 1.08996 * 109.47549 * 181.82090 * 14 13 12 40 40 H 1.09000 * 109.47613 * 301.82860 * 14 13 12 41 41 H 1.08996 * 109.47108 * 60.00173 * 17 15 13 42 42 H 1.08995 * 109.46741 * 180.02562 * 17 15 13 43 43 H 1.09000 * 109.46893 * 300.00281 * 17 15 13 44 44 H 0.97001 * 119.99933 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3657 1.9901 0.5513 5 6 3.3859 1.2512 0.6672 6 6 3.2254 0.8863 2.1205 7 6 3.0667 1.8794 3.0690 8 6 2.9146 1.5445 4.4015 9 6 2.9316 0.2169 4.7868 10 6 3.0955 -0.7758 3.8389 11 6 3.2428 -0.4412 2.5058 12 6 2.1613 1.7964 -1.4412 13 7 2.6378 3.1860 -1.4377 14 6 1.5826 4.1032 -0.9869 15 6 3.1412 3.5732 -2.7623 16 1 2.3413 3.4799 -3.4967 17 6 4.3026 2.6573 -3.1542 18 6 3.6207 5.0012 -2.7197 19 1 3.5574 5.5650 -1.8007 20 6 4.1403 5.5881 -3.8540 21 7 4.2179 4.9016 -4.9730 22 14 4.7340 7.3586 -3.8013 23 1 4.5384 7.9058 -2.4348 24 1 6.1758 7.4078 -4.1531 25 1 3.9590 8.1696 -4.7744 26 1 -0.3634 0.5809 0.8478 27 1 -0.3634 0.4436 -0.9269 28 1 -0.3633 -1.0246 0.0793 29 1 4.0014 0.5014 0.1702 30 1 3.8667 2.2263 0.5884 31 1 3.0582 2.9166 2.7685 32 1 2.7869 2.3201 5.1421 33 1 2.8172 -0.0445 5.8284 34 1 3.1092 -1.8129 4.1400 35 1 3.3713 -1.2168 1.7654 36 1 2.8802 1.1671 -1.9659 37 1 1.1965 1.7444 -1.9458 38 1 1.2995 3.8564 0.0364 39 1 1.9515 5.1282 -1.0246 40 1 0.7138 4.0056 -1.6378 41 1 3.9563 1.6243 -3.1849 42 1 4.6764 2.9449 -4.1368 43 1 5.1027 2.7507 -2.4198 44 1 4.5838 5.3144 -5.7709 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000296712646.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:47:58 Heat of formation + Delta-G solvation = -33.572563 kcal Electronic energy + Delta-G solvation = -22070.925906 eV Core-core repulsion = 18987.684843 eV Total energy + Delta-G solvation = -3083.241063 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.49188 -39.37004 -38.04979 -34.98908 -33.99031 -31.66625 -31.42971 -30.46821 -28.17748 -27.14687 -26.54990 -25.32633 -23.33280 -22.77437 -21.81167 -20.89428 -18.40504 -17.87181 -17.61082 -16.81777 -16.44372 -16.32665 -15.82314 -15.69324 -15.56973 -15.04757 -14.86736 -14.43605 -14.17098 -14.00014 -13.90672 -13.54074 -13.20503 -12.97050 -12.94139 -12.79114 -12.68786 -12.57087 -12.30170 -12.09110 -11.94804 -11.90539 -11.74387 -11.68548 -11.48014 -10.89600 -10.52425 -10.49643 -9.71386 -9.49615 -8.94327 -8.10572 -6.22151 0.55357 0.60886 1.42118 1.44404 1.55686 2.42324 2.76481 2.99639 3.18508 3.48691 3.76216 4.05146 4.10170 4.25078 4.30431 4.32750 4.41335 4.47946 4.50111 4.57084 4.63501 4.70440 4.73435 4.76535 4.82248 4.87236 4.94693 4.98777 5.05245 5.08260 5.18956 5.27039 5.29205 5.37498 5.51068 5.68387 5.71040 5.72988 5.77664 5.87614 6.22935 6.25224 6.29147 6.37057 6.71240 6.92672 7.47091 8.95908 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.022467 B = 0.004237 C = 0.003895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1245.959197 B = 6607.069060 C = 7187.636771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.393 6.393 3 C 0.118 3.882 4 H 0.061 0.939 5 C -0.065 4.065 6 C -0.084 4.084 7 C -0.133 4.133 8 C -0.127 4.127 9 C -0.132 4.132 10 C -0.128 4.128 11 C -0.116 4.116 12 C 0.031 3.969 13 N -0.529 5.529 14 C 0.036 3.964 15 C 0.217 3.783 16 H -0.041 1.041 17 C -0.121 4.121 18 C -0.515 4.515 19 H 0.064 0.936 20 C 0.010 3.990 21 N -0.922 5.922 22 Si 0.960 3.040 23 H -0.265 1.265 24 H -0.282 1.282 25 H -0.283 1.283 26 H 0.045 0.955 27 H 0.035 0.965 28 H 0.102 0.898 29 H 0.068 0.932 30 H 0.088 0.912 31 H 0.121 0.879 32 H 0.138 0.862 33 H 0.143 0.857 34 H 0.139 0.861 35 H 0.120 0.880 36 H 0.071 0.929 37 H 0.018 0.982 38 H 0.073 0.927 39 H 0.065 0.935 40 H 0.005 0.995 41 H 0.027 0.973 42 H 0.059 0.941 43 H 0.034 0.966 44 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.390 -9.485 16.694 19.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.312 6.312 3 C 0.060 3.940 4 H 0.079 0.921 5 C -0.102 4.102 6 C -0.084 4.084 7 C -0.151 4.151 8 C -0.145 4.145 9 C -0.150 4.150 10 C -0.145 4.145 11 C -0.134 4.134 12 C -0.097 4.097 13 N -0.255 5.255 14 C -0.112 4.112 15 C 0.110 3.890 16 H -0.023 1.023 17 C -0.179 4.179 18 C -0.554 4.554 19 H 0.082 0.918 20 C -0.188 4.188 21 N -0.562 5.562 22 Si 0.786 3.214 23 H -0.189 1.189 24 H -0.208 1.208 25 H -0.209 1.209 26 H 0.064 0.936 27 H 0.053 0.947 28 H 0.120 0.880 29 H 0.087 0.913 30 H 0.107 0.893 31 H 0.139 0.861 32 H 0.156 0.844 33 H 0.161 0.839 34 H 0.157 0.843 35 H 0.138 0.862 36 H 0.089 0.911 37 H 0.036 0.964 38 H 0.091 0.909 39 H 0.084 0.916 40 H 0.023 0.977 41 H 0.046 0.954 42 H 0.078 0.922 43 H 0.053 0.947 44 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -4.841 -9.611 16.847 19.991 hybrid contribution -0.573 1.106 -1.383 1.861 sum -5.415 -8.506 15.464 18.461 Atomic orbital electron populations 1.22895 0.80359 1.03641 0.99930 1.87861 1.20644 1.27732 1.94923 1.21852 0.94681 0.83877 0.93558 0.92117 1.20547 0.95520 1.03052 0.91126 1.19940 0.99478 0.93994 0.95029 1.21264 1.00936 0.99287 0.93622 1.21393 1.00017 0.97328 0.95770 1.21436 1.00334 0.92763 1.00455 1.21413 0.99919 1.00463 0.92740 1.21185 0.99967 0.95635 0.96654 1.22632 0.98132 0.91404 0.97557 1.62007 1.34024 1.00802 1.28659 1.22289 0.91938 0.98128 0.98837 1.19045 0.91734 0.94571 0.83676 1.02336 1.21675 0.98821 0.95800 1.01607 1.21456 1.40497 0.97142 0.96282 0.91810 1.25716 0.96045 1.01930 0.95109 1.70035 1.46918 1.37949 1.01303 0.85475 0.77773 0.79967 0.78221 1.18916 1.20753 1.20916 0.93602 0.94651 0.87976 0.91338 0.89315 0.86091 0.84386 0.83941 0.84297 0.86185 0.91081 0.96410 0.90869 0.91632 0.97654 0.95410 0.92235 0.94687 0.93016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.64 10.84 113.37 1.23 1.87 16 2 O -0.39 -11.41 9.85 -148.98 -1.47 -12.88 16 3 C 0.12 3.63 2.18 30.60 0.07 3.70 16 4 H 0.06 1.82 6.20 -2.39 -0.01 1.80 16 5 C -0.07 -1.97 5.00 29.85 0.15 -1.82 16 6 C -0.08 -2.28 4.97 -19.87 -0.10 -2.37 16 7 C -0.13 -3.31 9.70 22.27 0.22 -3.10 16 8 C -0.13 -2.63 10.05 22.27 0.22 -2.41 16 9 C -0.13 -2.49 10.05 22.27 0.22 -2.27 16 10 C -0.13 -2.59 10.05 22.27 0.22 -2.37 16 11 C -0.12 -2.86 9.40 22.27 0.21 -2.65 16 12 C 0.03 1.16 4.52 86.30 0.39 1.55 16 13 N -0.53 -22.17 3.97 -901.45 -3.58 -25.75 16 14 C 0.04 1.38 9.12 127.69 1.16 2.55 16 15 C 0.22 11.04 2.06 44.17 0.09 11.13 16 16 H -0.04 -2.35 8.14 -2.39 -0.02 -2.37 16 17 C -0.12 -5.99 8.79 71.99 0.63 -5.35 16 18 C -0.52 -28.01 7.86 25.60 0.20 -27.81 16 19 H 0.06 3.41 6.42 -2.91 -0.02 3.39 16 20 C 0.01 0.57 5.30 84.65 0.45 1.02 16 21 N -0.92 -53.21 11.32 21.45 0.24 -52.97 16 22 Si 0.96 43.41 29.54 68.60 2.03 45.44 16 23 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 24 H -0.28 -12.56 7.11 99.48 0.71 -11.86 16 25 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 26 H 0.05 0.96 7.98 -2.38 -0.02 0.95 16 27 H 0.03 0.82 7.67 -2.39 -0.02 0.81 16 28 H 0.10 1.86 8.14 -2.39 -0.02 1.84 16 29 H 0.07 2.11 8.09 -2.39 -0.02 2.09 16 30 H 0.09 2.95 7.58 -2.38 -0.02 2.93 16 31 H 0.12 2.94 8.06 -2.91 -0.02 2.92 16 32 H 0.14 2.19 8.06 -2.91 -0.02 2.17 16 33 H 0.14 1.87 8.06 -2.91 -0.02 1.84 16 34 H 0.14 2.11 8.06 -2.91 -0.02 2.09 16 35 H 0.12 2.89 8.06 -2.91 -0.02 2.87 16 36 H 0.07 2.78 5.64 -2.39 -0.01 2.76 16 37 H 0.02 0.67 7.52 -2.39 -0.02 0.65 16 38 H 0.07 2.30 6.65 -2.38 -0.02 2.29 16 39 H 0.06 2.68 6.05 -2.39 -0.01 2.67 16 40 H 0.00 0.19 8.08 -2.39 -0.02 0.17 16 41 H 0.03 1.23 6.10 -2.39 -0.01 1.21 16 42 H 0.06 3.26 6.07 -2.39 -0.01 3.24 16 43 H 0.03 1.68 8.14 -2.39 -0.02 1.66 16 44 H 0.26 14.29 8.31 -92.71 -0.77 13.52 16 Total: -1.00 -61.15 348.95 3.55 -57.60 By element: Atomic # 1 Polarization: 15.93 SS G_CDS: 0.96 Total: 16.89 kcal Atomic # 6 Polarization: -33.71 SS G_CDS: 5.37 Total: -28.34 kcal Atomic # 7 Polarization: -75.38 SS G_CDS: -3.34 Total: -78.72 kcal Atomic # 8 Polarization: -11.41 SS G_CDS: -1.47 Total: -12.88 kcal Atomic # 14 Polarization: 43.41 SS G_CDS: 2.03 Total: 45.44 kcal Total: -61.15 3.55 -57.60 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000296712646.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.031 kcal (2) G-P(sol) polarization free energy of solvation -61.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.603 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds