Wall clock time and date at job start Mon Mar 30 2020 01:48:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42905 * 113.99778 * 2 1 4 4 H 1.09001 * 109.46882 * 30.00382 * 3 2 1 5 5 C 1.53005 * 109.46802 * 150.00013 * 3 2 1 6 6 C 1.50693 * 109.47204 * 295.00352 * 5 3 2 7 7 C 1.38240 * 119.99927 * 269.72555 * 6 5 3 8 8 C 1.38231 * 120.00061 * 179.76628 * 7 6 5 9 9 C 1.38235 * 120.00092 * 0.51122 * 8 7 6 10 10 C 1.38239 * 119.99832 * 359.74080 * 9 8 7 11 11 C 1.38234 * 119.99992 * 0.02562 * 10 9 8 12 12 C 1.52998 * 109.47307 * 269.99994 * 3 2 1 13 13 N 1.46900 * 109.47022 * 65.00111 * 12 3 2 14 14 C 1.46903 * 111.00006 * 66.04498 * 13 12 3 15 15 C 1.46899 * 111.00308 * 189.99780 * 13 12 3 16 16 H 1.09000 * 109.47180 * 300.00720 * 15 13 12 17 17 C 1.53005 * 109.46729 * 60.00263 * 15 13 12 18 18 C 1.50699 * 109.47308 * 179.97438 * 15 13 12 19 19 H 1.07995 * 120.00040 * 0.02562 * 18 15 13 20 20 C 1.37876 * 119.99856 * 180.02562 * 18 15 13 21 21 N 1.31517 * 120.00105 * 359.97438 * 20 18 15 22 22 Si 1.86800 * 120.00013 * 180.02562 * 20 18 15 23 23 H 1.48507 * 109.46913 * 89.99464 * 22 20 18 24 24 H 1.48499 * 109.47272 * 209.99637 * 22 20 18 25 25 H 1.48499 * 109.47008 * 329.99599 * 22 20 18 26 26 H 1.08997 * 109.47442 * 59.99964 * 1 2 3 27 27 H 1.08999 * 109.46926 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47171 * 299.99768 * 1 2 3 29 29 H 1.09004 * 109.46988 * 55.00109 * 5 3 2 30 30 H 1.09000 * 109.46765 * 174.99897 * 5 3 2 31 31 H 1.08005 * 119.99841 * 0.02562 * 7 6 5 32 32 H 1.08003 * 119.99729 * 180.23085 * 8 7 6 33 33 H 1.07997 * 120.00361 * 179.72363 * 9 8 7 34 34 H 1.07997 * 119.99822 * 179.97438 * 10 9 8 35 35 H 1.07998 * 120.00045 * 179.97438 * 11 10 9 36 36 H 1.08999 * 109.47009 * 184.99894 * 12 3 2 37 37 H 1.08995 * 109.47158 * 305.00200 * 12 3 2 38 38 H 1.09001 * 109.47063 * 59.99964 * 14 13 12 39 39 H 1.08998 * 109.46814 * 180.02562 * 14 13 12 40 40 H 1.09004 * 109.46925 * 300.00163 * 14 13 12 41 41 H 1.08997 * 109.46953 * 180.02562 * 17 15 13 42 42 H 1.09006 * 109.46725 * 299.99728 * 17 15 13 43 43 H 1.08999 * 109.47366 * 60.00019 * 17 15 13 44 44 H 0.96998 * 119.99859 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 1.9994 0.5139 5 6 3.3589 1.2633 0.7213 6 6 3.1416 0.9235 2.1732 7 6 2.9464 1.9328 3.0976 8 6 2.7423 1.6209 4.4287 9 6 2.7439 0.3004 4.8373 10 6 2.9443 -0.7086 3.9139 11 6 3.1436 -0.3970 2.5819 12 6 2.2176 1.7715 -1.4425 13 7 0.9128 1.9270 -2.0992 14 6 0.1420 3.0175 -1.4871 15 6 1.0727 2.1417 -3.5436 16 1 1.6596 3.0442 -3.7141 17 6 1.7926 0.9410 -4.1610 18 6 -0.2838 2.2958 -4.1817 19 1 -1.1754 2.2404 -3.5750 20 6 -0.3865 2.5077 -5.5402 21 7 0.6994 2.5758 -6.2791 22 14 -2.0679 2.6996 -6.3312 23 1 -2.4551 4.1333 -6.3294 24 1 -2.0168 2.2024 -7.7295 25 1 -3.0684 1.9156 -5.5633 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 3.9931 0.5052 0.2617 30 1 3.8426 2.2370 0.6443 31 1 2.9492 2.9648 2.7790 32 1 2.5861 2.4093 5.1501 33 1 2.5889 0.0569 5.8780 34 1 2.9459 -1.7403 4.2332 35 1 3.3006 -1.1853 1.8606 36 1 2.7412 2.7275 -1.4437 37 1 2.8099 1.0321 -1.9815 38 1 0.6951 3.9518 -1.5830 39 1 -0.8195 3.1105 -1.9919 40 1 -0.0217 2.7988 -0.4318 41 1 1.9116 1.1005 -5.2327 42 1 2.7738 0.8291 -3.6995 43 1 1.2058 0.0384 -3.9906 44 1 0.6271 2.7252 -7.2348 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000296712650.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:48:03 Heat of formation + Delta-G solvation = -15.859032 kcal Electronic energy + Delta-G solvation = -22072.353731 eV Core-core repulsion = 18989.880785 eV Total energy + Delta-G solvation = -3082.472946 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.47721 -38.17491 -36.10503 -33.40351 -32.65753 -30.87433 -29.88216 -29.02373 -26.56093 -25.80647 -24.62627 -23.73856 -22.54161 -21.44987 -20.50193 -19.32223 -16.79841 -16.49722 -16.27524 -15.32216 -15.21783 -14.96295 -14.64112 -14.48162 -13.90914 -13.54783 -13.40502 -13.06938 -12.92872 -12.73797 -12.37131 -12.28796 -11.88305 -11.78683 -11.35275 -11.12359 -11.06460 -10.95387 -10.93536 -10.69469 -10.63345 -10.11507 -10.09932 -10.02530 -9.89344 -9.11214 -8.90525 -8.83611 -8.56945 -8.42094 -7.12447 -6.01249 -4.05829 1.36159 1.41986 3.29583 3.36557 3.40189 3.78036 4.25468 4.39680 4.72415 4.87449 4.94901 5.02469 5.12140 5.30429 5.38617 5.45857 5.52669 5.63066 5.64063 5.77299 5.83667 5.94978 6.04445 6.05834 6.08698 6.14804 6.21823 6.36704 6.45103 6.48502 6.51251 6.54983 6.69600 6.74375 6.89617 7.02237 7.09720 7.17317 7.53404 7.68836 7.76320 7.82367 8.21401 8.32420 8.59617 9.00325 9.59118 11.05545 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.036848 B = 0.003659 C = 0.003615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 759.698166 B = 7649.865059 C = 7743.348091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.375 6.375 3 C 0.103 3.897 4 H 0.056 0.944 5 C -0.082 4.082 6 C -0.070 4.070 7 C -0.122 4.122 8 C -0.123 4.123 9 C -0.130 4.130 10 C -0.123 4.123 11 C -0.099 4.099 12 C 0.027 3.973 13 N -0.531 5.531 14 C 0.030 3.970 15 C 0.213 3.787 16 H -0.003 1.003 17 C -0.131 4.131 18 C -0.503 4.503 19 H 0.063 0.937 20 C 0.059 3.941 21 N -0.893 5.893 22 Si 0.896 3.104 23 H -0.282 1.282 24 H -0.287 1.287 25 H -0.274 1.274 26 H 0.079 0.921 27 H 0.069 0.931 28 H 0.021 0.979 29 H 0.081 0.919 30 H 0.082 0.918 31 H 0.119 0.881 32 H 0.117 0.883 33 H 0.116 0.884 34 H 0.118 0.882 35 H 0.124 0.876 36 H 0.027 0.973 37 H 0.083 0.917 38 H 0.010 0.990 39 H 0.078 0.922 40 H 0.040 0.960 41 H 0.083 0.917 42 H 0.008 0.992 43 H 0.034 0.966 44 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.551 -2.807 18.009 18.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.294 6.294 3 C 0.045 3.955 4 H 0.074 0.926 5 C -0.120 4.120 6 C -0.070 4.070 7 C -0.140 4.140 8 C -0.142 4.142 9 C -0.149 4.149 10 C -0.141 4.141 11 C -0.117 4.117 12 C -0.101 4.101 13 N -0.256 5.256 14 C -0.118 4.118 15 C 0.107 3.893 16 H 0.014 0.986 17 C -0.189 4.189 18 C -0.542 4.542 19 H 0.081 0.919 20 C -0.142 4.142 21 N -0.532 5.532 22 Si 0.724 3.276 23 H -0.209 1.209 24 H -0.213 1.213 25 H -0.199 1.199 26 H 0.098 0.902 27 H 0.088 0.912 28 H 0.040 0.960 29 H 0.100 0.900 30 H 0.101 0.899 31 H 0.137 0.863 32 H 0.135 0.865 33 H 0.134 0.866 34 H 0.136 0.864 35 H 0.142 0.858 36 H 0.045 0.955 37 H 0.101 0.899 38 H 0.029 0.971 39 H 0.097 0.903 40 H 0.059 0.941 41 H 0.102 0.898 42 H 0.027 0.973 43 H 0.054 0.946 44 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 4.447 -3.383 17.855 18.708 hybrid contribution -0.653 1.134 -0.594 1.437 sum 3.795 -2.248 17.260 17.815 Atomic orbital electron populations 1.22874 0.81028 1.01666 1.01032 1.87767 1.19986 1.26605 1.95033 1.22049 0.93105 0.85651 0.94731 0.92579 1.20756 0.97376 1.02832 0.91021 1.19856 0.98496 0.93397 0.95220 1.21077 1.00760 0.98990 0.93171 1.21074 1.00753 0.96425 0.95901 1.21087 1.01338 0.93108 0.99320 1.21144 1.00392 0.99069 0.93504 1.21098 0.98859 0.96150 0.95606 1.22733 0.93368 0.99533 0.94507 1.62128 1.14485 1.42740 1.06229 1.22324 1.00048 0.91959 0.97473 1.19234 0.96145 0.93255 0.80657 0.98584 1.21831 0.95554 0.98347 1.03183 1.21143 0.92097 1.48442 0.92483 0.91929 1.24931 0.96635 0.95394 0.97277 1.69896 1.27316 1.50000 1.06011 0.86538 0.84346 0.78153 0.78602 1.20852 1.21271 1.19855 0.90240 0.91218 0.96043 0.90007 0.89942 0.86322 0.86452 0.86570 0.86382 0.85786 0.95540 0.89854 0.97098 0.90342 0.94087 0.89803 0.97294 0.94642 0.93008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.49 10.38 101.05 1.05 1.54 16 2 O -0.38 -6.33 9.84 -35.23 -0.35 -6.68 16 3 C 0.10 1.60 2.17 -26.73 -0.06 1.54 16 4 H 0.06 0.88 5.98 -51.93 -0.31 0.56 16 5 C -0.08 -1.06 5.06 -27.88 -0.14 -1.20 16 6 C -0.07 -0.88 4.97 -104.63 -0.52 -1.40 16 7 C -0.12 -1.41 9.70 -39.58 -0.38 -1.79 16 8 C -0.12 -1.30 10.05 -39.59 -0.40 -1.70 16 9 C -0.13 -1.34 10.05 -39.58 -0.40 -1.74 16 10 C -0.12 -1.34 10.05 -39.58 -0.40 -1.74 16 11 C -0.10 -1.22 9.40 -39.58 -0.37 -1.59 16 12 C 0.03 0.50 4.44 -3.82 -0.02 0.48 16 13 N -0.53 -11.16 2.86 -236.28 -0.67 -11.83 16 14 C 0.03 0.59 8.38 60.07 0.50 1.09 16 15 C 0.21 5.34 2.06 -68.86 -0.14 5.20 16 16 H 0.00 -0.09 8.14 -51.93 -0.42 -0.52 16 17 C -0.13 -3.23 8.76 37.16 0.33 -2.90 16 18 C -0.50 -13.60 7.88 -34.44 -0.27 -13.87 16 19 H 0.06 1.68 6.41 -52.49 -0.34 1.34 16 20 C 0.06 1.61 5.30 -17.82 -0.09 1.52 16 21 N -0.89 -25.42 11.32 55.43 0.63 -24.79 16 22 Si 0.90 21.20 29.54 -169.99 -5.02 16.18 16 23 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 24 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 25 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 26 H 0.08 1.45 5.67 -51.93 -0.29 1.15 16 27 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 28 H 0.02 0.31 8.08 -51.93 -0.42 -0.11 16 29 H 0.08 1.04 8.09 -51.93 -0.42 0.62 16 30 H 0.08 0.95 8.08 -51.93 -0.42 0.53 16 31 H 0.12 1.21 8.06 -52.48 -0.42 0.79 16 32 H 0.12 0.98 8.06 -52.48 -0.42 0.55 16 33 H 0.12 0.93 8.06 -52.49 -0.42 0.50 16 34 H 0.12 1.04 8.06 -52.49 -0.42 0.62 16 35 H 0.12 1.49 8.06 -52.49 -0.42 1.07 16 36 H 0.03 0.47 8.12 -51.93 -0.42 0.05 16 37 H 0.08 1.60 5.83 -51.93 -0.30 1.29 16 38 H 0.01 0.20 8.14 -51.93 -0.42 -0.22 16 39 H 0.08 1.62 6.10 -51.93 -0.32 1.30 16 40 H 0.04 0.68 6.04 -51.93 -0.31 0.37 16 41 H 0.08 2.26 6.07 -51.93 -0.32 1.94 16 42 H 0.01 0.18 6.20 -51.93 -0.32 -0.14 16 43 H 0.03 0.87 8.14 -51.93 -0.42 0.45 16 44 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 LS Contribution 345.35 15.07 5.20 5.20 Total: -1.00 -28.95 345.35 -8.66 -37.61 By element: Atomic # 1 Polarization: 8.00 SS G_CDS: -7.13 Total: 0.87 kcal Atomic # 6 Polarization: -15.25 SS G_CDS: -1.32 Total: -16.56 kcal Atomic # 7 Polarization: -36.58 SS G_CDS: -0.05 Total: -36.62 kcal Atomic # 8 Polarization: -6.33 SS G_CDS: -0.35 Total: -6.68 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -28.95 -8.66 -37.61 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000296712650.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.753 kcal (2) G-P(sol) polarization free energy of solvation -28.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.612 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds