Wall clock time and date at job start Mon Mar 30 2020 01:55:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46904 * 109.47531 * 2 1 4 4 C 1.46894 * 111.00338 * 200.23310 * 3 2 1 5 5 C 1.50702 * 109.46895 * 72.27632 * 4 3 2 6 6 C 1.38271 * 119.94181 * 263.94368 * 5 4 3 7 7 C 1.38149 * 120.05238 * 179.72533 * 6 5 4 8 8 C 1.38738 * 119.94105 * 0.56873 * 7 6 5 9 9 O 1.35908 * 120.05181 * 179.68010 * 8 7 6 10 10 C 1.42893 * 117.00023 * 0.02943 * 9 8 7 11 11 C 1.38727 * 119.89106 * 359.70584 * 8 7 6 12 12 C 1.38141 * 119.94290 * 359.97438 * 11 8 7 13 13 C 1.46899 * 110.99540 * 76.27845 * 3 2 1 14 14 H 1.08996 * 109.47795 * 315.25156 * 13 3 2 15 15 C 1.53008 * 109.47068 * 75.25264 * 13 3 2 16 16 C 1.53000 * 109.47160 * 195.25000 * 13 3 2 17 17 C 1.50705 * 109.46917 * 62.88380 * 16 13 3 18 18 H 1.07993 * 119.99968 * 5.02135 * 17 16 13 19 19 C 1.37874 * 119.99904 * 185.01818 * 17 16 13 20 20 N 1.31519 * 120.00062 * 0.02562 * 19 17 16 21 21 Si 1.86796 * 120.00106 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47422 * 89.99568 * 21 19 17 23 23 H 1.48496 * 109.47214 * 210.00046 * 21 19 17 24 24 H 1.48510 * 109.46906 * 329.99723 * 21 19 17 25 25 H 1.08996 * 109.47361 * 300.49930 * 1 2 3 26 26 H 1.09002 * 109.46885 * 60.49242 * 1 2 3 27 27 H 1.08996 * 109.47416 * 180.49141 * 1 2 3 28 28 H 1.09000 * 109.47290 * 239.99780 * 2 1 3 29 29 H 1.09001 * 109.46973 * 120.00242 * 2 1 3 30 30 H 1.08994 * 109.47437 * 192.27270 * 4 3 2 31 31 H 1.08999 * 109.47117 * 312.27883 * 4 3 2 32 32 H 1.07994 * 119.97688 * 359.97438 * 6 5 4 33 33 H 1.08000 * 120.03243 * 180.25309 * 7 6 5 34 34 H 1.08990 * 109.47847 * 59.99398 * 10 9 8 35 35 H 1.09003 * 109.47222 * 180.02562 * 10 9 8 36 36 H 1.09008 * 109.46796 * 299.98989 * 10 9 8 37 37 H 1.08003 * 120.02894 * 179.97438 * 11 8 7 38 38 H 1.08001 * 119.97154 * 179.97438 * 12 11 8 39 39 H 1.09003 * 109.46741 * 299.99597 * 15 13 3 40 40 H 1.08999 * 109.46984 * 179.97438 * 15 13 3 41 41 H 1.08997 * 109.46579 * 59.99785 * 15 13 3 42 42 H 1.08999 * 109.47585 * 182.88609 * 16 13 3 43 43 H 1.09007 * 109.47041 * 302.88853 * 16 13 3 44 44 H 0.96998 * 120.00122 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4084 1.4524 -0.4743 5 6 3.4444 1.2023 -1.9599 6 6 3.7115 -0.0667 -2.4399 7 6 3.7395 -0.2997 -3.8013 8 6 3.5111 0.7432 -4.6872 9 8 3.5445 0.5178 -6.0270 10 6 3.8202 -0.8178 -6.4535 11 6 3.2490 2.0166 -4.2032 12 6 3.2155 2.2431 -2.8408 13 6 1.8885 1.9897 1.3323 14 1 0.9079 1.7519 1.7444 15 6 2.9769 1.4349 2.2536 16 6 2.0402 3.5080 1.2205 17 6 0.9263 4.0628 0.3704 18 1 0.1395 3.4117 0.0191 19 6 0.9116 5.4016 0.0412 20 7 1.8700 6.1944 0.4686 21 14 -0.4694 6.0894 -1.0119 22 1 -1.5783 6.5473 -0.1368 23 1 0.0388 7.2355 -1.8077 24 1 -0.9665 5.0320 -1.9286 25 1 -0.3634 0.5215 0.8854 26 1 -0.3633 0.5062 -0.8944 27 1 -0.3634 -1.0276 0.0088 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5139 0.8900 30 1 3.8173 2.4402 -0.2622 31 1 4.0038 0.6954 0.0362 32 1 3.8944 -0.8771 -1.7500 33 1 3.9441 -1.2919 -4.1758 34 1 3.0558 -1.4892 -6.0626 35 1 3.8181 -0.8592 -7.5427 36 1 4.7977 -1.1238 -6.0806 37 1 3.0712 2.8303 -4.8908 38 1 3.0119 3.2343 -2.4635 39 1 2.8688 0.3532 2.3333 40 1 2.8798 1.8840 3.2421 41 1 3.9576 1.6728 1.8416 42 1 1.9940 3.9521 2.2148 43 1 3.0000 3.7444 0.7611 44 1 1.8595 7.1364 0.2374 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000297841726.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:50 Heat of formation + Delta-G solvation = -15.193199 kcal Electronic energy + Delta-G solvation = -22239.678812 eV Core-core repulsion = 19157.234738 eV Total energy + Delta-G solvation = -3082.444074 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.98712 -38.44209 -36.83301 -33.07892 -31.44320 -31.34025 -30.75387 -28.46038 -27.33683 -27.13769 -24.53446 -23.32856 -22.35323 -21.52183 -20.90082 -18.50090 -17.94857 -16.23578 -16.04323 -15.76210 -15.68277 -14.94011 -14.50590 -14.23496 -14.13010 -13.65477 -13.49644 -13.23295 -12.80456 -12.59363 -12.47919 -12.03522 -11.89431 -11.71653 -11.67870 -11.31812 -11.08726 -11.00856 -10.87877 -10.76884 -10.59252 -10.51541 -10.42851 -10.26191 -9.79831 -9.15624 -8.92863 -8.67690 -8.22357 -7.84143 -7.39338 -5.84760 -3.81583 1.64608 1.70228 3.35851 3.41522 3.48317 3.53885 4.00665 4.60096 4.74285 4.89240 5.05644 5.06872 5.11727 5.30963 5.35817 5.49751 5.52499 5.56454 5.69025 5.75373 5.78544 5.90288 5.93419 5.99065 6.05904 6.10801 6.14601 6.26007 6.38448 6.46584 6.52705 6.59466 6.61698 6.69119 6.70588 7.06164 7.06297 7.12368 7.55059 7.58967 7.72054 7.96002 8.08655 8.16900 8.62977 9.23907 9.79630 11.27173 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.014053 B = 0.005904 C = 0.004779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1991.925489 B = 4741.315672 C = 5857.365683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.045 3.955 3 N -0.502 5.502 4 C 0.098 3.902 5 C -0.097 4.097 6 C -0.082 4.082 7 C -0.214 4.214 8 C 0.114 3.886 9 O -0.322 6.322 10 C 0.030 3.970 11 C -0.153 4.153 12 C -0.047 4.047 13 C 0.085 3.915 14 H 0.070 0.930 15 C -0.184 4.184 16 C 0.031 3.969 17 C -0.483 4.483 18 H 0.059 0.941 19 C 0.052 3.948 20 N -0.904 5.904 21 Si 0.884 3.116 22 H -0.285 1.285 23 H -0.290 1.290 24 H -0.274 1.274 25 H 0.055 0.945 26 H 0.061 0.939 27 H 0.044 0.956 28 H 0.064 0.936 29 H 0.024 0.976 30 H 0.092 0.908 31 H 0.030 0.970 32 H 0.116 0.884 33 H 0.120 0.880 34 H 0.052 0.948 35 H 0.095 0.905 36 H 0.052 0.948 37 H 0.127 0.873 38 H 0.141 0.859 39 H 0.039 0.961 40 H 0.055 0.945 41 H 0.053 0.947 42 H 0.014 0.986 43 H 0.021 0.979 44 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.590 -14.980 -7.019 17.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.083 4.083 3 N -0.226 5.226 4 C -0.030 4.030 5 C -0.097 4.097 6 C -0.101 4.101 7 C -0.233 4.233 8 C 0.069 3.931 9 O -0.236 6.236 10 C -0.065 4.065 11 C -0.171 4.171 12 C -0.065 4.065 13 C -0.023 4.023 14 H 0.088 0.912 15 C -0.243 4.243 16 C -0.006 4.006 17 C -0.522 4.522 18 H 0.077 0.923 19 C -0.147 4.147 20 N -0.546 5.546 21 Si 0.712 3.288 22 H -0.211 1.211 23 H -0.216 1.216 24 H -0.199 1.199 25 H 0.074 0.926 26 H 0.080 0.920 27 H 0.063 0.937 28 H 0.083 0.917 29 H 0.042 0.958 30 H 0.110 0.890 31 H 0.048 0.952 32 H 0.134 0.866 33 H 0.138 0.862 34 H 0.071 0.929 35 H 0.113 0.887 36 H 0.070 0.930 37 H 0.145 0.855 38 H 0.159 0.841 39 H 0.058 0.942 40 H 0.074 0.926 41 H 0.072 0.928 42 H 0.032 0.968 43 H 0.040 0.960 44 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 4.314 -14.400 -7.506 16.802 hybrid contribution -0.215 -0.319 -0.003 0.385 sum 4.099 -14.719 -7.509 17.024 Atomic orbital electron populations 1.21709 0.95459 0.99831 1.02921 1.22115 0.96112 0.90598 0.99497 1.62108 1.18660 1.15522 1.26271 1.20980 0.90322 1.01886 0.89785 1.19832 1.00875 0.92915 0.96116 1.20790 0.98666 0.96401 0.94230 1.21044 1.09950 0.98224 0.94052 1.19005 0.97774 0.94401 0.81884 1.86050 1.86670 1.30328 1.20546 1.22967 1.00304 0.82510 1.00750 1.20475 1.06118 0.94617 0.95911 1.21090 0.93957 1.00278 0.91174 1.21970 0.96607 0.98437 0.85289 0.91156 1.22538 1.00977 0.99516 1.01250 1.19183 0.97840 0.86867 0.96712 1.21125 1.08303 0.92835 1.29903 0.92252 1.24958 0.95839 0.97356 0.96564 1.69960 1.32895 1.04838 1.46873 0.86717 0.82697 0.78607 0.80730 1.21125 1.21598 1.19856 0.92566 0.92019 0.93717 0.91715 0.95754 0.88971 0.95230 0.86585 0.86210 0.92905 0.88688 0.92965 0.85549 0.84132 0.94241 0.92594 0.92843 0.96815 0.96036 0.93409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.20 10.04 37.16 0.37 -1.83 16 2 C 0.04 0.71 5.44 -3.82 -0.02 0.69 16 3 N -0.50 -9.35 3.94 -228.09 -0.90 -10.25 16 4 C 0.10 1.69 3.67 -4.98 -0.02 1.67 16 5 C -0.10 -1.60 4.97 -104.60 -0.52 -2.12 16 6 C -0.08 -1.17 8.21 -39.60 -0.33 -1.50 16 7 C -0.21 -2.90 9.04 -39.43 -0.36 -3.25 16 8 C 0.11 1.71 6.69 -39.22 -0.26 1.44 16 9 O -0.32 -4.41 10.50 -19.45 -0.20 -4.62 16 10 C 0.03 0.27 9.81 101.05 0.99 1.26 16 11 C -0.15 -2.47 9.99 -39.44 -0.39 -2.87 16 12 C -0.05 -0.82 9.72 -39.61 -0.38 -1.20 16 13 C 0.08 1.68 2.15 -67.71 -0.15 1.54 16 14 H 0.07 1.43 6.57 -51.93 -0.34 1.09 16 15 C -0.18 -3.09 8.42 37.16 0.31 -2.78 16 16 C 0.03 0.77 4.44 -27.88 -0.12 0.64 16 17 C -0.48 -13.22 8.78 -34.44 -0.30 -13.53 16 18 H 0.06 1.64 7.75 -52.49 -0.41 1.23 16 19 C 0.05 1.47 5.46 -17.82 -0.10 1.37 16 20 N -0.90 -26.85 13.29 55.43 0.74 -26.11 16 21 Si 0.88 21.99 29.54 -169.99 -5.02 16.97 16 22 H -0.28 -7.04 7.11 56.52 0.40 -6.63 16 23 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 24 H -0.27 -6.76 7.11 56.52 0.40 -6.36 16 25 H 0.06 0.92 6.77 -51.93 -0.35 0.56 16 26 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 27 H 0.04 0.58 8.14 -51.93 -0.42 0.15 16 28 H 0.06 0.98 5.76 -51.93 -0.30 0.68 16 29 H 0.02 0.36 6.50 -51.93 -0.34 0.03 16 30 H 0.09 1.79 6.09 -51.93 -0.32 1.48 16 31 H 0.03 0.46 7.08 -51.93 -0.37 0.10 16 32 H 0.12 1.43 7.85 -52.49 -0.41 1.02 16 33 H 0.12 1.30 6.30 -52.49 -0.33 0.97 16 34 H 0.05 0.44 7.66 -51.93 -0.40 0.04 16 35 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.05 0.42 7.66 -51.92 -0.40 0.02 16 37 H 0.13 1.91 8.06 -52.48 -0.42 1.49 16 38 H 0.14 2.71 8.06 -52.49 -0.42 2.29 16 39 H 0.04 0.59 6.72 -51.93 -0.35 0.24 16 40 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 41 H 0.05 0.89 6.60 -51.93 -0.34 0.54 16 42 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 43 H 0.02 0.56 6.43 -51.93 -0.33 0.23 16 44 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 LS Contribution 346.29 15.07 5.22 5.22 Total: -1.00 -30.12 346.29 -8.52 -38.64 By element: Atomic # 1 Polarization: 7.68 SS G_CDS: -7.08 Total: 0.60 kcal Atomic # 6 Polarization: -19.17 SS G_CDS: -1.27 Total: -20.45 kcal Atomic # 7 Polarization: -36.20 SS G_CDS: -0.16 Total: -36.36 kcal Atomic # 8 Polarization: -4.41 SS G_CDS: -0.20 Total: -4.62 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -30.12 -8.52 -38.64 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000297841726.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.451 kcal (2) G-P(sol) polarization free energy of solvation -30.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.645 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds