Wall clock time and date at job start Mon Mar 30 2020 01:55:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46904 * 109.47531 * 2 1 4 4 C 1.46894 * 111.00338 * 200.23310 * 3 2 1 5 5 C 1.50702 * 109.46895 * 72.27632 * 4 3 2 6 6 C 1.38271 * 119.94181 * 263.94368 * 5 4 3 7 7 C 1.38149 * 120.05238 * 179.72533 * 6 5 4 8 8 C 1.38738 * 119.94105 * 0.56873 * 7 6 5 9 9 O 1.35908 * 120.05181 * 179.68010 * 8 7 6 10 10 C 1.42893 * 117.00023 * 0.02943 * 9 8 7 11 11 C 1.38727 * 119.89106 * 359.70584 * 8 7 6 12 12 C 1.38141 * 119.94290 * 359.97438 * 11 8 7 13 13 C 1.46899 * 110.99540 * 76.27845 * 3 2 1 14 14 H 1.08996 * 109.47795 * 315.25156 * 13 3 2 15 15 C 1.53008 * 109.47068 * 75.25264 * 13 3 2 16 16 C 1.53000 * 109.47160 * 195.25000 * 13 3 2 17 17 C 1.50705 * 109.46917 * 62.88380 * 16 13 3 18 18 H 1.07993 * 119.99968 * 5.02135 * 17 16 13 19 19 C 1.37874 * 119.99904 * 185.01818 * 17 16 13 20 20 N 1.31519 * 120.00062 * 0.02562 * 19 17 16 21 21 Si 1.86796 * 120.00106 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47422 * 89.99568 * 21 19 17 23 23 H 1.48496 * 109.47214 * 210.00046 * 21 19 17 24 24 H 1.48510 * 109.46906 * 329.99723 * 21 19 17 25 25 H 1.08996 * 109.47361 * 300.49930 * 1 2 3 26 26 H 1.09002 * 109.46885 * 60.49242 * 1 2 3 27 27 H 1.08996 * 109.47416 * 180.49141 * 1 2 3 28 28 H 1.09000 * 109.47290 * 239.99780 * 2 1 3 29 29 H 1.09001 * 109.46973 * 120.00242 * 2 1 3 30 30 H 1.08994 * 109.47437 * 192.27270 * 4 3 2 31 31 H 1.08999 * 109.47117 * 312.27883 * 4 3 2 32 32 H 1.07994 * 119.97688 * 359.97438 * 6 5 4 33 33 H 1.08000 * 120.03243 * 180.25309 * 7 6 5 34 34 H 1.08990 * 109.47847 * 59.99398 * 10 9 8 35 35 H 1.09003 * 109.47222 * 180.02562 * 10 9 8 36 36 H 1.09008 * 109.46796 * 299.98989 * 10 9 8 37 37 H 1.08003 * 120.02894 * 179.97438 * 11 8 7 38 38 H 1.08001 * 119.97154 * 179.97438 * 12 11 8 39 39 H 1.09003 * 109.46741 * 299.99597 * 15 13 3 40 40 H 1.08999 * 109.46984 * 179.97438 * 15 13 3 41 41 H 1.08997 * 109.46579 * 59.99785 * 15 13 3 42 42 H 1.08999 * 109.47585 * 182.88609 * 16 13 3 43 43 H 1.09007 * 109.47041 * 302.88853 * 16 13 3 44 44 H 0.96998 * 120.00122 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4084 1.4524 -0.4743 5 6 3.4444 1.2023 -1.9599 6 6 3.7115 -0.0667 -2.4399 7 6 3.7395 -0.2997 -3.8013 8 6 3.5111 0.7432 -4.6872 9 8 3.5445 0.5178 -6.0270 10 6 3.8202 -0.8178 -6.4535 11 6 3.2490 2.0166 -4.2032 12 6 3.2155 2.2431 -2.8408 13 6 1.8885 1.9897 1.3323 14 1 0.9079 1.7519 1.7444 15 6 2.9769 1.4349 2.2536 16 6 2.0402 3.5080 1.2205 17 6 0.9263 4.0628 0.3704 18 1 0.1395 3.4117 0.0191 19 6 0.9116 5.4016 0.0412 20 7 1.8700 6.1944 0.4686 21 14 -0.4694 6.0894 -1.0119 22 1 -1.5783 6.5473 -0.1368 23 1 0.0388 7.2355 -1.8077 24 1 -0.9665 5.0320 -1.9286 25 1 -0.3634 0.5215 0.8854 26 1 -0.3633 0.5062 -0.8944 27 1 -0.3634 -1.0276 0.0088 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5139 0.8900 30 1 3.8173 2.4402 -0.2622 31 1 4.0038 0.6954 0.0362 32 1 3.8944 -0.8771 -1.7500 33 1 3.9441 -1.2919 -4.1758 34 1 3.0558 -1.4892 -6.0626 35 1 3.8181 -0.8592 -7.5427 36 1 4.7977 -1.1238 -6.0806 37 1 3.0712 2.8303 -4.8908 38 1 3.0119 3.2343 -2.4635 39 1 2.8688 0.3532 2.3333 40 1 2.8798 1.8840 3.2421 41 1 3.9576 1.6728 1.8416 42 1 1.9940 3.9521 2.2148 43 1 3.0000 3.7444 0.7611 44 1 1.8595 7.1364 0.2374 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000297841726.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:49 Heat of formation + Delta-G solvation = -32.450225 kcal Electronic energy + Delta-G solvation = -22240.427133 eV Core-core repulsion = 19157.234738 eV Total energy + Delta-G solvation = -3083.192394 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.11091 -39.76291 -38.05391 -35.06555 -33.11215 -32.55903 -31.93358 -29.81382 -29.02576 -28.12664 -25.82926 -25.16583 -23.61816 -22.94385 -22.17279 -19.98829 -19.00655 -18.32396 -17.29964 -16.99140 -16.68999 -16.56364 -16.00803 -15.77592 -15.37143 -14.96974 -14.57497 -14.47003 -14.35336 -14.08558 -13.65346 -13.53637 -13.47031 -13.16155 -12.90950 -12.76793 -12.60349 -12.43893 -12.38173 -12.26666 -12.19115 -11.98503 -11.78759 -11.62718 -11.34439 -11.05091 -10.94909 -10.43465 -9.87483 -9.02369 -8.77516 -8.05963 -6.08440 0.45981 0.50058 1.40181 1.41866 1.52627 2.42796 2.48983 2.77772 3.25896 3.42427 3.88563 3.98514 4.05896 4.16888 4.27344 4.38478 4.42510 4.43865 4.46987 4.51847 4.55254 4.63433 4.66994 4.76268 4.79952 4.83234 4.86391 4.98547 5.12279 5.16564 5.17873 5.25771 5.29769 5.35789 5.43290 5.50448 5.56391 5.75685 5.84095 5.89935 5.94446 6.38643 6.51262 6.55488 6.63794 7.04651 7.56280 9.06013 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.014053 B = 0.005904 C = 0.004779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1991.925489 B = 4741.315672 C = 5857.365683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.047 3.953 3 N -0.526 5.526 4 C 0.106 3.894 5 C -0.111 4.111 6 C -0.073 4.073 7 C -0.203 4.203 8 C 0.115 3.885 9 O -0.340 6.340 10 C 0.018 3.982 11 C -0.170 4.170 12 C -0.069 4.069 13 C 0.094 3.906 14 H 0.065 0.935 15 C -0.174 4.174 16 C 0.038 3.962 17 C -0.486 4.486 18 H 0.054 0.946 19 C 0.000 4.000 20 N -0.939 5.939 21 Si 0.944 3.056 22 H -0.276 1.276 23 H -0.288 1.288 24 H -0.271 1.271 25 H 0.042 0.958 26 H 0.039 0.961 27 H 0.076 0.924 28 H 0.078 0.922 29 H 0.043 0.957 30 H 0.057 0.943 31 H 0.054 0.946 32 H 0.146 0.854 33 H 0.157 0.843 34 H 0.064 0.936 35 H 0.117 0.883 36 H 0.067 0.933 37 H 0.124 0.876 38 H 0.104 0.896 39 H 0.067 0.933 40 H 0.055 0.945 41 H 0.052 0.948 42 H -0.012 1.012 43 H -0.002 1.002 44 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.544 -18.455 -7.987 20.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.080 4.080 3 N -0.249 5.249 4 C -0.021 4.021 5 C -0.112 4.112 6 C -0.091 4.091 7 C -0.222 4.222 8 C 0.069 3.931 9 O -0.254 6.254 10 C -0.076 4.076 11 C -0.189 4.189 12 C -0.088 4.088 13 C -0.014 4.014 14 H 0.084 0.916 15 C -0.233 4.233 16 C 0.000 4.000 17 C -0.525 4.525 18 H 0.072 0.928 19 C -0.196 4.196 20 N -0.582 5.582 21 Si 0.771 3.229 22 H -0.202 1.202 23 H -0.214 1.214 24 H -0.196 1.196 25 H 0.061 0.939 26 H 0.058 0.942 27 H 0.094 0.906 28 H 0.096 0.904 29 H 0.061 0.939 30 H 0.075 0.925 31 H 0.072 0.928 32 H 0.164 0.836 33 H 0.174 0.826 34 H 0.083 0.917 35 H 0.135 0.865 36 H 0.085 0.915 37 H 0.142 0.858 38 H 0.122 0.878 39 H 0.086 0.914 40 H 0.074 0.926 41 H 0.071 0.929 42 H 0.006 0.994 43 H 0.016 0.984 44 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 4.261 -17.894 -8.480 20.255 hybrid contribution -0.177 0.701 0.207 0.752 sum 4.084 -17.193 -8.273 19.512 Atomic orbital electron populations 1.21695 0.95448 1.01333 1.01149 1.22174 0.96066 0.88857 1.00934 1.61971 1.19771 1.17779 1.25419 1.20839 0.89866 1.00660 0.90777 1.19804 1.02223 0.93881 0.95258 1.21038 0.97140 0.95762 0.95190 1.21407 1.08014 0.99326 0.93416 1.19054 0.96964 0.94042 0.83005 1.86037 1.86497 1.33267 1.19591 1.23340 1.01440 0.80468 1.02329 1.20480 1.07164 0.95914 0.95293 1.20858 0.96282 0.99322 0.92337 1.21634 0.97560 0.95121 0.87080 0.91640 1.22401 0.99569 1.01048 1.00250 1.19036 0.95788 0.90790 0.94338 1.21402 1.08594 0.92885 1.29579 0.92785 1.25701 0.98045 0.97914 0.97895 1.70081 1.34687 1.05032 1.48361 0.85755 0.80094 0.77830 0.79215 1.20220 1.21413 1.19569 0.93905 0.94183 0.90559 0.90364 0.93888 0.92487 0.92830 0.83589 0.82582 0.91691 0.86464 0.91485 0.85819 0.87768 0.91407 0.92582 0.92927 0.99386 0.98412 0.93478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.04 10.04 71.98 0.72 -3.32 16 2 C 0.05 1.37 5.44 86.30 0.47 1.84 16 3 N -0.53 -19.39 3.94 -875.53 -3.45 -22.85 16 4 C 0.11 3.66 3.67 85.56 0.31 3.97 16 5 C -0.11 -3.63 4.97 -19.85 -0.10 -3.73 16 6 C -0.07 -1.86 8.21 22.26 0.18 -1.67 16 7 C -0.20 -4.79 9.04 22.37 0.20 -4.59 16 8 C 0.11 3.24 6.69 22.51 0.15 3.39 16 9 O -0.34 -8.59 10.50 -92.51 -0.97 -9.56 16 10 C 0.02 0.26 9.81 113.37 1.11 1.38 16 11 C -0.17 -5.64 9.99 22.36 0.22 -5.42 16 12 C -0.07 -2.56 9.72 22.25 0.22 -2.34 16 13 C 0.09 3.76 2.15 44.92 0.10 3.86 16 14 H 0.07 2.67 6.57 -2.39 -0.02 2.65 16 15 C -0.17 -5.64 8.42 71.98 0.61 -5.03 16 16 C 0.04 1.95 4.44 29.85 0.13 2.09 16 17 C -0.49 -27.64 8.78 25.60 0.22 -27.42 16 18 H 0.05 3.07 7.75 -2.91 -0.02 3.05 16 19 C 0.00 0.01 5.46 84.65 0.46 0.47 16 20 N -0.94 -57.99 13.29 21.45 0.28 -57.70 16 21 Si 0.94 46.44 29.54 68.60 2.03 48.47 16 22 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 23 H -0.29 -14.01 7.11 99.48 0.71 -13.30 16 24 H -0.27 -13.09 7.11 99.48 0.71 -12.38 16 25 H 0.04 1.34 6.77 -2.39 -0.02 1.33 16 26 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 27 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 28 H 0.08 2.07 5.76 -2.39 -0.01 2.06 16 29 H 0.04 1.11 6.50 -2.39 -0.02 1.10 16 30 H 0.06 2.35 6.09 -2.39 -0.01 2.34 16 31 H 0.05 1.57 7.08 -2.39 -0.02 1.55 16 32 H 0.15 2.85 7.85 -2.91 -0.02 2.83 16 33 H 0.16 2.53 6.30 -2.91 -0.02 2.51 16 34 H 0.06 0.80 7.66 -2.39 -0.02 0.78 16 35 H 0.12 1.16 8.14 -2.39 -0.02 1.15 16 36 H 0.07 0.79 7.66 -2.38 -0.02 0.77 16 37 H 0.12 3.98 8.06 -2.91 -0.02 3.96 16 38 H 0.10 4.49 8.06 -2.91 -0.02 4.46 16 39 H 0.07 1.82 6.72 -2.39 -0.02 1.81 16 40 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 41 H 0.05 1.70 6.60 -2.39 -0.02 1.69 16 42 H -0.01 -0.68 8.14 -2.39 -0.02 -0.70 16 43 H 0.00 -0.14 6.43 -2.38 -0.02 -0.15 16 44 H 0.26 15.12 8.31 -92.71 -0.77 14.35 16 Total: -1.00 -67.85 346.29 3.87 -63.98 By element: Atomic # 1 Polarization: 13.21 SS G_CDS: 0.97 Total: 14.18 kcal Atomic # 6 Polarization: -41.53 SS G_CDS: 5.02 Total: -36.52 kcal Atomic # 7 Polarization: -77.38 SS G_CDS: -3.17 Total: -80.55 kcal Atomic # 8 Polarization: -8.59 SS G_CDS: -0.97 Total: -9.56 kcal Atomic # 14 Polarization: 46.44 SS G_CDS: 2.03 Total: 48.47 kcal Total: -67.85 3.87 -63.98 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000297841726.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.531 kcal (2) G-P(sol) polarization free energy of solvation -67.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.981 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds