Wall clock time and date at job start Mon Mar 30 2020 01:43:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08998 * 109.47663 * 2 1 4 4 C 1.53001 * 109.47081 * 119.99780 * 2 1 3 5 5 C 1.50696 * 109.47283 * 183.33662 * 4 2 1 6 6 H 1.07996 * 120.00256 * 5.06598 * 5 4 2 7 7 C 1.37880 * 120.00280 * 185.06534 * 5 4 2 8 8 N 1.31512 * 120.00495 * 180.02562 * 7 5 4 9 9 Si 1.86807 * 119.99808 * 359.97438 * 7 5 4 10 10 H 1.48501 * 109.47117 * 90.00082 * 9 7 5 11 11 H 1.48503 * 109.46995 * 210.00330 * 9 7 5 12 12 H 1.48503 * 109.47102 * 330.00072 * 9 7 5 13 13 N 1.46905 * 109.47301 * 239.99328 * 2 1 3 14 14 C 1.46901 * 110.99714 * 73.13504 * 13 2 1 15 15 C 1.46900 * 111.00143 * 309.18087 * 13 2 1 16 16 C 1.53002 * 109.47117 * 189.99977 * 15 13 2 17 17 O 1.42902 * 109.47070 * 64.99860 * 16 15 13 18 18 C 1.42895 * 113.99614 * 180.02562 * 17 16 15 19 19 C 1.50700 * 109.46910 * 179.97438 * 18 17 16 20 20 C 1.38231 * 120.00416 * 269.72528 * 19 18 17 21 21 C 1.38234 * 120.00341 * 179.76777 * 20 19 18 22 22 C 1.38241 * 119.99692 * 0.50748 * 21 20 19 23 23 C 1.38231 * 119.99985 * 359.74479 * 22 21 20 24 24 C 1.38237 * 120.00181 * 0.02562 * 23 22 21 25 25 H 1.09004 * 109.47147 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47466 * 300.00685 * 1 2 3 27 27 H 1.09007 * 109.47125 * 60.00795 * 1 2 3 28 28 H 1.09008 * 109.47261 * 303.33495 * 4 2 1 29 29 H 1.09000 * 109.47113 * 63.33300 * 4 2 1 30 30 H 0.96995 * 120.00297 * 180.02562 * 8 7 5 31 31 H 1.08991 * 109.47504 * 53.86968 * 14 13 2 32 32 H 1.08996 * 109.47057 * 173.87808 * 14 13 2 33 33 H 1.09000 * 109.46578 * 293.87308 * 14 13 2 34 34 H 1.09007 * 109.46805 * 309.99608 * 15 13 2 35 35 H 1.08991 * 109.47094 * 69.99338 * 15 13 2 36 36 H 1.08998 * 109.46842 * 184.99536 * 16 15 13 37 37 H 1.08994 * 109.46766 * 304.99795 * 16 15 13 38 38 H 1.09004 * 109.47393 * 299.99593 * 18 17 16 39 39 H 1.08998 * 109.47514 * 59.99831 * 18 17 16 40 40 H 1.07997 * 119.99865 * 359.97438 * 20 19 18 41 41 H 1.08000 * 120.00332 * 180.23046 * 21 20 19 42 42 H 1.07999 * 119.99726 * 179.72753 * 22 21 20 43 43 H 1.07997 * 119.99906 * 179.97438 * 23 22 21 44 44 H 1.08000 * 119.99941 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 3.5446 -0.6500 1.2914 6 1 4.0788 -0.0726 0.5514 7 6 4.2394 -1.3221 2.2745 8 7 5.5525 -1.2596 2.3116 9 14 3.3154 -2.3204 3.5549 10 1 3.1465 -3.7135 3.0691 11 1 4.0843 -2.3289 4.8254 12 1 1.9808 -1.7122 3.7882 13 7 2.0197 -0.6927 -1.1994 14 6 1.8200 0.1294 -2.4004 15 6 1.3783 -2.0059 -1.3477 16 6 2.0841 -2.7964 -2.4513 17 8 3.4279 -3.0748 -2.0529 18 6 4.1792 -3.8130 -3.0185 19 6 5.5735 -4.0481 -2.4972 20 6 6.5751 -3.1341 -2.7655 21 6 7.8530 -3.3474 -2.2833 22 6 8.1316 -4.4801 -1.5414 23 6 7.1312 -5.3968 -1.2775 24 6 5.8522 -5.1811 -1.7557 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3634 0.5137 -0.8901 28 1 1.6286 -0.2430 2.1383 29 1 1.7262 -1.7647 1.2199 30 1 6.0413 -1.7327 3.0031 31 1 2.2715 1.1098 -2.2489 32 1 2.2877 -0.3578 -3.2559 33 1 0.7525 0.2460 -2.5874 34 1 1.4485 -2.5528 -0.4073 35 1 0.3296 -1.8703 -1.6117 36 1 1.5544 -3.7335 -2.6224 37 1 2.0915 -2.2102 -3.3701 38 1 3.6932 -4.7713 -3.2019 39 1 4.2302 -3.2475 -3.9489 40 1 6.3586 -2.2516 -3.3492 41 1 8.6347 -2.6314 -2.4898 42 1 9.1309 -4.6490 -1.1684 43 1 7.3490 -6.2819 -0.6983 44 1 5.0708 -5.8975 -1.5498 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000298042653.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:40 Heat of formation + Delta-G solvation = -11.163174 kcal Electronic energy + Delta-G solvation = -22175.036999 eV Core-core repulsion = 19092.767680 eV Total energy + Delta-G solvation = -3082.269319 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.03711 -38.24146 -36.73072 -32.84889 -31.85062 -30.91581 -30.55941 -28.84469 -27.62601 -25.63207 -24.93656 -22.75359 -22.25730 -21.34237 -20.96972 -18.65220 -16.66122 -16.43545 -16.20960 -15.87276 -15.33733 -14.91112 -14.65924 -14.21434 -13.92995 -13.60953 -13.34599 -13.07128 -12.91170 -12.38683 -12.36304 -12.14938 -11.95914 -11.87224 -11.67983 -11.47695 -11.21281 -10.97989 -10.72322 -10.66572 -10.63076 -10.31728 -9.98398 -9.63854 -9.43247 -9.13840 -8.88258 -8.54862 -8.46925 -8.25742 -7.38782 -5.74788 -3.66661 1.62771 1.77014 3.45252 3.51607 3.53533 3.90508 4.48442 4.59537 4.67564 5.09544 5.11920 5.31056 5.38898 5.45417 5.50101 5.54338 5.58600 5.61456 5.63441 5.70386 5.77110 5.81032 5.85670 5.88703 5.95580 5.96554 6.05445 6.29772 6.33722 6.34278 6.36729 6.47535 6.60728 6.76803 6.83169 6.86892 6.93537 7.23199 7.33021 7.41104 7.65330 7.90494 7.94387 8.10101 8.87285 9.38011 9.88614 11.39699 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.012324 B = 0.006945 C = 0.005110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2271.471520 B = 4030.638046 C = 5478.203550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.095 3.905 3 H 0.074 0.926 4 C -0.004 4.004 5 C -0.480 4.480 6 H 0.077 0.923 7 C 0.065 3.935 8 N -0.906 5.906 9 Si 0.868 3.132 10 H -0.280 1.280 11 H -0.292 1.292 12 H -0.271 1.271 13 N -0.501 5.501 14 C 0.024 3.976 15 C 0.057 3.943 16 C 0.068 3.932 17 O -0.343 6.343 18 C 0.102 3.898 19 C -0.082 4.082 20 C -0.090 4.090 21 C -0.120 4.120 22 C -0.115 4.115 23 C -0.125 4.125 24 C -0.098 4.098 25 H 0.051 0.949 26 H 0.056 0.944 27 H 0.042 0.958 28 H 0.013 0.987 29 H 0.011 0.989 30 H 0.256 0.744 31 H 0.063 0.937 32 H 0.058 0.942 33 H 0.012 0.988 34 H 0.089 0.911 35 H 0.038 0.962 36 H 0.041 0.959 37 H 0.043 0.957 38 H 0.047 0.953 39 H 0.049 0.951 40 H 0.120 0.880 41 H 0.120 0.880 42 H 0.118 0.882 43 H 0.118 0.882 44 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.681 -5.576 -12.504 14.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C -0.013 4.013 3 H 0.092 0.908 4 C -0.041 4.041 5 C -0.518 4.518 6 H 0.095 0.905 7 C -0.134 4.134 8 N -0.546 5.546 9 Si 0.696 3.304 10 H -0.207 1.207 11 H -0.218 1.218 12 H -0.196 1.196 13 N -0.224 5.224 14 C -0.124 4.124 15 C -0.072 4.072 16 C -0.010 4.010 17 O -0.261 6.261 18 C 0.025 3.975 19 C -0.082 4.082 20 C -0.108 4.108 21 C -0.138 4.138 22 C -0.133 4.133 23 C -0.143 4.143 24 C -0.117 4.117 25 H 0.070 0.930 26 H 0.075 0.925 27 H 0.061 0.939 28 H 0.031 0.969 29 H 0.029 0.971 30 H 0.066 0.934 31 H 0.082 0.918 32 H 0.077 0.923 33 H 0.030 0.970 34 H 0.107 0.893 35 H 0.056 0.944 36 H 0.059 0.941 37 H 0.061 0.939 38 H 0.065 0.935 39 H 0.067 0.933 40 H 0.138 0.862 41 H 0.138 0.862 42 H 0.136 0.864 43 H 0.136 0.864 44 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -2.942 -5.649 -12.166 13.733 hybrid contribution -1.398 -0.550 0.502 1.583 sum -4.339 -6.199 -11.664 13.903 Atomic orbital electron populations 1.22574 0.99849 1.01234 1.00915 1.21722 0.89675 0.98380 0.91537 0.90770 1.19652 0.98259 0.94789 0.91417 1.20941 0.88899 1.29838 1.12119 0.90518 1.24935 0.94555 0.96457 0.97447 1.69905 1.05993 1.44222 1.34502 0.86979 0.80282 0.81336 0.81753 1.20652 1.21840 1.19552 1.61986 1.57148 1.01651 1.01568 1.22408 0.97738 0.98296 0.94008 1.22126 0.93582 0.91663 0.99788 1.22540 0.83975 0.97120 0.97323 1.88354 1.22698 1.74124 1.40925 1.21232 0.89386 0.95207 0.91694 1.19530 0.94065 0.95172 0.99456 1.20989 0.92736 0.97713 0.99400 1.21081 0.96840 0.97389 0.98483 1.21105 0.99158 0.94698 0.98387 1.21050 0.93323 0.99723 1.00184 1.20970 0.96536 0.97416 0.96733 0.92967 0.92533 0.93855 0.96864 0.97072 0.93366 0.91845 0.92308 0.96952 0.89266 0.94417 0.94123 0.93936 0.93484 0.93277 0.86180 0.86189 0.86399 0.86371 0.86420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.05 8.40 37.15 0.31 -2.74 16 2 C 0.09 1.92 2.26 -67.71 -0.15 1.77 16 3 H 0.07 1.55 7.92 -51.93 -0.41 1.13 16 4 C 0.00 -0.09 3.48 -27.88 -0.10 -0.19 16 5 C -0.48 -14.15 9.35 -34.44 -0.32 -14.48 16 6 H 0.08 2.50 7.99 -52.49 -0.42 2.08 16 7 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 8 N -0.91 -29.28 13.96 55.43 0.77 -28.51 16 9 Si 0.87 22.85 27.37 -169.99 -4.65 18.19 16 10 H -0.28 -7.34 7.11 56.52 0.40 -6.94 16 11 H -0.29 -7.64 7.11 56.52 0.40 -7.24 16 12 H -0.27 -6.80 6.69 56.52 0.38 -6.42 16 13 N -0.50 -9.77 4.31 -234.89 -1.01 -10.78 16 14 C 0.02 0.38 9.01 60.07 0.54 0.92 16 15 C 0.06 0.99 4.19 -3.82 -0.02 0.97 16 16 C 0.07 1.07 5.99 37.16 0.22 1.29 16 17 O -0.34 -6.66 10.27 -35.23 -0.36 -7.02 16 18 C 0.10 1.57 6.06 36.01 0.22 1.79 16 19 C -0.08 -1.39 5.51 -104.62 -0.58 -1.97 16 20 C -0.09 -1.50 9.70 -39.59 -0.38 -1.89 16 21 C -0.12 -1.88 10.05 -39.58 -0.40 -2.28 16 22 C -0.12 -1.75 10.05 -39.58 -0.40 -2.15 16 23 C -0.12 -1.92 10.05 -39.58 -0.40 -2.31 16 24 C -0.10 -1.60 9.70 -39.58 -0.38 -1.99 16 25 H 0.05 0.83 6.54 -51.93 -0.34 0.49 16 26 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 27 H 0.04 0.63 6.95 -51.92 -0.36 0.27 16 28 H 0.01 0.33 7.55 -51.92 -0.39 -0.07 16 29 H 0.01 0.28 5.51 -51.93 -0.29 -0.01 16 30 H 0.26 7.86 8.31 -40.82 -0.34 7.52 16 31 H 0.06 1.00 7.98 -51.93 -0.41 0.59 16 32 H 0.06 0.87 6.47 -51.93 -0.34 0.53 16 33 H 0.01 0.17 6.98 -51.93 -0.36 -0.19 16 34 H 0.09 1.79 6.19 -51.92 -0.32 1.47 16 35 H 0.04 0.57 6.82 -51.93 -0.35 0.21 16 36 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.04 0.60 6.38 -51.93 -0.33 0.27 16 38 H 0.05 0.62 8.09 -51.93 -0.42 0.20 16 39 H 0.05 0.66 8.08 -51.93 -0.42 0.24 16 40 H 0.12 1.83 8.06 -52.49 -0.42 1.41 16 41 H 0.12 1.60 8.06 -52.49 -0.42 1.18 16 42 H 0.12 1.48 8.06 -52.49 -0.42 1.06 16 43 H 0.12 1.51 8.06 -52.49 -0.42 1.09 16 44 H 0.12 1.70 8.06 -52.49 -0.42 1.28 16 LS Contribution 350.40 15.07 5.28 5.28 Total: -1.00 -34.27 350.40 -9.19 -43.46 By element: Atomic # 1 Polarization: 8.01 SS G_CDS: -7.29 Total: 0.72 kcal Atomic # 6 Polarization: -19.41 SS G_CDS: -1.93 Total: -21.34 kcal Atomic # 7 Polarization: -39.05 SS G_CDS: -0.24 Total: -39.29 kcal Atomic # 8 Polarization: -6.66 SS G_CDS: -0.36 Total: -7.02 kcal Atomic # 14 Polarization: 22.85 SS G_CDS: -4.65 Total: 18.19 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -34.27 -9.19 -43.46 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000298042653.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.298 kcal (2) G-P(sol) polarization free energy of solvation -34.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.461 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds