Wall clock time and date at job start Mon Mar 30 2020 01:43:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09005 * 109.47229 * 2 1 4 4 C 1.53005 * 109.47027 * 240.00697 * 2 1 3 5 5 C 1.50698 * 109.47333 * 174.99703 * 4 2 1 6 6 H 1.08002 * 119.99560 * 0.02562 * 5 4 2 7 7 C 1.37873 * 120.00147 * 179.97438 * 5 4 2 8 8 N 1.31515 * 119.99800 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 120.00263 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.46852 * 359.97438 * 9 7 5 11 11 H 1.48493 * 109.47307 * 119.99821 * 9 7 5 12 12 H 1.48502 * 109.47254 * 240.00087 * 9 7 5 13 13 N 1.46894 * 109.47444 * 120.00466 * 2 1 3 14 14 C 1.46900 * 111.00020 * 58.95495 * 13 2 1 15 15 C 1.46900 * 111.00272 * 294.99759 * 13 2 1 16 16 C 1.52995 * 109.47381 * 189.99988 * 15 13 2 17 17 H 1.09007 * 109.47148 * 305.00176 * 16 15 13 18 18 O 1.42904 * 109.47095 * 64.99880 * 16 15 13 19 19 C 1.52995 * 109.47207 * 185.00172 * 16 15 13 20 20 C 1.50707 * 109.47301 * 174.99824 * 19 16 15 21 21 C 1.38238 * 119.99792 * 90.00016 * 20 19 16 22 22 C 1.38235 * 119.99712 * 179.97438 * 21 20 19 23 23 C 1.38234 * 120.00220 * 359.97124 * 22 21 20 24 24 C 1.38233 * 120.00037 * 0.28719 * 23 22 21 25 25 C 1.38234 * 120.00179 * 269.97953 * 20 19 16 26 26 H 1.09000 * 109.47401 * 59.99025 * 1 2 3 27 27 H 1.08996 * 109.46956 * 179.97438 * 1 2 3 28 28 H 1.09010 * 109.46543 * 299.99265 * 1 2 3 29 29 H 1.08993 * 109.46673 * 295.00221 * 4 2 1 30 30 H 1.09002 * 109.47098 * 54.99366 * 4 2 1 31 31 H 0.96997 * 119.99947 * 179.97438 * 8 7 5 32 32 H 1.09004 * 109.46994 * 296.04409 * 14 13 2 33 33 H 1.09000 * 109.47263 * 56.04065 * 14 13 2 34 34 H 1.09004 * 109.47322 * 176.04686 * 14 13 2 35 35 H 1.09002 * 109.46867 * 70.00086 * 15 13 2 36 36 H 1.09002 * 109.47055 * 309.99836 * 15 13 2 37 37 H 0.96697 * 113.99898 * 60.00393 * 18 16 15 38 38 H 1.09005 * 109.47610 * 55.00128 * 19 16 15 39 39 H 1.09000 * 109.47256 * 294.99469 * 19 16 15 40 40 H 1.08005 * 120.00068 * 359.97438 * 21 20 19 41 41 H 1.07999 * 119.99770 * 179.97438 * 22 21 20 42 42 H 1.08002 * 119.99744 * 180.02562 * 23 22 21 43 43 H 1.07998 * 120.00395 * 179.72811 * 24 23 22 44 44 H 1.07999 * 119.99968 * 359.97438 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2494 5 6 3.5419 -0.6148 -1.3130 6 1 4.0789 -0.0861 -0.5393 7 6 4.2303 -1.1932 -2.3581 8 7 3.5763 -1.8374 -3.2998 9 14 6.0921 -1.0620 -2.4365 10 1 6.5837 -0.2916 -1.2661 11 1 6.6854 -2.4231 -2.4185 12 1 6.4870 -0.3664 -3.6877 13 7 2.0197 -0.6925 1.1993 14 6 1.5284 -2.0762 1.2457 15 6 1.6489 0.0390 2.4180 16 6 2.3791 -0.5665 3.6184 17 1 2.1678 -1.6346 3.6713 18 8 3.7863 -0.3661 3.4706 19 6 1.8993 0.1125 4.9028 20 6 2.5259 -0.5657 6.0939 21 6 3.7383 -0.1189 6.5850 22 6 4.3128 -0.7407 7.6779 23 6 3.6745 -1.8089 8.2799 24 6 2.4647 -2.2591 7.7855 25 6 1.8880 -1.6344 6.6955 26 1 -0.3634 0.5140 -0.8899 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8902 29 1 1.7516 -1.7713 -1.2058 30 1 1.6053 -0.2616 -2.1370 31 1 4.0606 -2.2441 -4.0353 32 1 0.4420 -2.0732 1.3346 33 1 1.8167 -2.5950 0.3315 34 1 1.9619 -2.5870 2.1056 35 1 0.5724 -0.0347 2.5726 36 1 1.9300 1.0868 2.3125 37 1 4.0476 0.5634 3.4168 38 1 0.8141 0.0363 4.9706 39 1 2.1896 1.1630 4.8887 40 1 4.2368 0.7160 6.1149 41 1 5.2602 -0.3919 8.0613 42 1 4.1232 -2.2943 9.1340 43 1 1.9681 -3.0964 8.2531 44 1 0.9404 -1.9830 6.3122 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000298392033.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:32 Heat of formation + Delta-G solvation = -30.101115 kcal Electronic energy + Delta-G solvation = -21689.828459 eV Core-core repulsion = 18606.737930 eV Total energy + Delta-G solvation = -3083.090529 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.57152 -38.30455 -36.43131 -32.93919 -32.71947 -30.98823 -30.89200 -28.87443 -27.40729 -26.42324 -24.51495 -22.96417 -22.63568 -21.33344 -20.86831 -18.70367 -16.96695 -16.18504 -16.05021 -15.91191 -15.42441 -15.09070 -14.84280 -14.48080 -14.06757 -13.63295 -13.44477 -13.33060 -13.05812 -12.76665 -12.42727 -12.20044 -11.96809 -11.68245 -11.49611 -11.30168 -11.19308 -11.03095 -10.93296 -10.86868 -10.58255 -10.45998 -10.35631 -9.98321 -9.74977 -9.12428 -8.97933 -8.92549 -8.66106 -8.21615 -7.39893 -5.84641 -3.81924 1.28970 1.34334 3.42500 3.49888 3.56683 3.69988 4.36674 4.61442 4.67326 4.72171 4.84950 4.92057 5.01622 5.14604 5.24443 5.37648 5.43137 5.49166 5.53142 5.60066 5.67233 5.73824 5.83222 5.92238 5.96526 5.96977 6.00938 6.06224 6.17539 6.27375 6.38745 6.43479 6.47868 6.58031 6.66465 6.79367 6.94050 6.99451 7.55834 7.71196 7.91314 8.03241 8.05513 8.17314 8.62473 9.24853 9.80048 11.27486 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.020136 B = 0.003996 C = 0.003564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1390.222017 B = 7004.657869 C = 7854.428595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.086 3.914 3 H 0.068 0.932 4 C 0.028 3.972 5 C -0.487 4.487 6 H 0.062 0.938 7 C 0.049 3.951 8 N -0.906 5.906 9 Si 0.889 3.111 10 H -0.272 1.272 11 H -0.287 1.287 12 H -0.289 1.289 13 N -0.503 5.503 14 C 0.023 3.977 15 C 0.022 3.978 16 C 0.119 3.881 17 H 0.096 0.904 18 O -0.539 6.539 19 C -0.116 4.116 20 C -0.069 4.069 21 C -0.104 4.104 22 C -0.120 4.120 23 C -0.129 4.129 24 C -0.121 4.121 25 C -0.121 4.121 26 H 0.055 0.945 27 H 0.052 0.948 28 H 0.038 0.962 29 H 0.020 0.980 30 H 0.017 0.983 31 H 0.256 0.744 32 H 0.013 0.987 33 H 0.084 0.916 34 H 0.054 0.946 35 H 0.032 0.968 36 H 0.070 0.930 37 H 0.367 0.633 38 H 0.078 0.922 39 H 0.075 0.925 40 H 0.120 0.880 41 H 0.119 0.881 42 H 0.117 0.883 43 H 0.119 0.881 44 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.962 3.225 20.919 21.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C -0.022 4.022 3 H 0.086 0.914 4 C -0.009 4.009 5 C -0.525 4.525 6 H 0.080 0.920 7 C -0.150 4.150 8 N -0.547 5.547 9 Si 0.718 3.282 10 H -0.197 1.197 11 H -0.214 1.214 12 H -0.215 1.215 13 N -0.225 5.225 14 C -0.125 4.125 15 C -0.107 4.107 16 C 0.059 3.941 17 H 0.114 0.886 18 O -0.343 6.343 19 C -0.154 4.154 20 C -0.069 4.069 21 C -0.122 4.122 22 C -0.138 4.138 23 C -0.147 4.147 24 C -0.139 4.139 25 C -0.139 4.139 26 H 0.074 0.926 27 H 0.071 0.929 28 H 0.057 0.943 29 H 0.038 0.962 30 H 0.036 0.964 31 H 0.066 0.934 32 H 0.031 0.969 33 H 0.103 0.897 34 H 0.073 0.927 35 H 0.050 0.950 36 H 0.088 0.912 37 H 0.213 0.787 38 H 0.097 0.903 39 H 0.094 0.906 40 H 0.138 0.862 41 H 0.137 0.863 42 H 0.136 0.864 43 H 0.137 0.863 44 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -4.405 2.463 20.745 21.350 hybrid contribution 0.021 0.562 -0.111 0.573 sum -4.384 3.025 20.634 21.311 Atomic orbital electron populations 1.22533 0.99990 1.01281 1.00551 1.21944 0.89839 0.98372 0.92044 0.91418 1.19240 0.96501 0.95404 0.89769 1.21225 0.91723 1.32758 1.06841 0.91951 1.25006 0.98049 0.95903 0.96017 1.69977 1.35116 1.37184 1.12426 0.86564 0.86459 0.77589 0.77558 1.19693 1.21358 1.21520 1.62027 1.58785 1.01467 1.00244 1.22440 0.95873 0.90985 1.03176 1.22844 0.97093 0.98679 0.92129 1.21898 0.81913 1.00171 0.90155 0.88583 1.86671 1.21463 1.30264 1.95860 1.21407 1.00754 0.99817 0.93464 1.19754 0.95103 0.96087 0.95930 1.21016 0.94936 1.00221 0.96022 1.21135 0.99739 0.96499 0.96453 1.21104 0.95858 0.97431 1.00341 1.21096 0.96049 0.99810 0.96955 1.21044 1.00186 0.96180 0.96476 0.92591 0.92893 0.94292 0.96157 0.96444 0.93443 0.96911 0.89746 0.92711 0.95037 0.91152 0.78717 0.90318 0.90638 0.86168 0.86293 0.86446 0.86338 0.86313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.15 8.50 37.16 0.32 -2.83 16 2 C 0.09 1.74 2.29 -67.71 -0.16 1.59 16 3 H 0.07 1.40 8.03 -51.93 -0.42 0.98 16 4 C 0.03 0.71 4.27 -27.88 -0.12 0.59 16 5 C -0.49 -13.81 8.84 -34.44 -0.30 -14.12 16 6 H 0.06 1.78 7.74 -52.49 -0.41 1.38 16 7 C 0.05 1.44 5.46 -17.82 -0.10 1.34 16 8 N -0.91 -27.63 13.29 55.43 0.74 -26.90 16 9 Si 0.89 22.52 29.54 -169.99 -5.02 17.50 16 10 H -0.27 -6.81 7.11 56.52 0.40 -6.40 16 11 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 12 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 13 N -0.50 -9.47 4.41 -234.88 -1.04 -10.51 16 14 C 0.02 0.42 8.53 60.06 0.51 0.94 16 15 C 0.02 0.31 4.03 -3.83 -0.02 0.30 16 16 C 0.12 1.57 2.91 -26.74 -0.08 1.50 16 17 H 0.10 1.41 6.34 -51.92 -0.33 1.08 16 18 O -0.54 -8.21 12.78 -35.23 -0.45 -8.66 16 19 C -0.12 -1.21 5.03 -27.88 -0.14 -1.35 16 20 C -0.07 -0.77 4.97 -104.62 -0.52 -1.29 16 21 C -0.10 -1.15 9.40 -39.58 -0.37 -1.52 16 22 C -0.12 -1.24 10.05 -39.58 -0.40 -1.64 16 23 C -0.13 -1.29 10.05 -39.58 -0.40 -1.68 16 24 C -0.12 -1.22 10.05 -39.58 -0.40 -1.62 16 25 C -0.12 -1.31 9.70 -39.58 -0.38 -1.69 16 26 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 27 H 0.05 0.91 6.48 -51.93 -0.34 0.57 16 28 H 0.04 0.58 6.75 -51.92 -0.35 0.23 16 29 H 0.02 0.55 6.09 -51.93 -0.32 0.23 16 30 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 32 H 0.01 0.21 6.51 -51.93 -0.34 -0.13 16 33 H 0.08 1.79 6.03 -51.93 -0.31 1.48 16 34 H 0.05 0.93 6.37 -51.93 -0.33 0.60 16 35 H 0.03 0.43 6.94 -51.93 -0.36 0.07 16 36 H 0.07 0.98 8.00 -51.93 -0.42 0.56 16 37 H 0.37 4.42 9.05 45.56 0.41 4.83 16 38 H 0.08 0.73 8.09 -51.93 -0.42 0.31 16 39 H 0.07 0.69 8.09 -51.93 -0.42 0.27 16 40 H 0.12 1.17 8.06 -52.48 -0.42 0.75 16 41 H 0.12 0.99 8.06 -52.49 -0.42 0.57 16 42 H 0.12 0.91 8.06 -52.49 -0.42 0.49 16 43 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 44 H 0.12 1.11 8.06 -52.49 -0.42 0.68 16 LS Contribution 350.78 15.07 5.29 5.29 Total: -1.00 -32.28 350.78 -9.47 -41.76 By element: Atomic # 1 Polarization: 9.46 SS G_CDS: -6.44 Total: 3.02 kcal Atomic # 6 Polarization: -18.94 SS G_CDS: -2.55 Total: -21.49 kcal Atomic # 7 Polarization: -37.11 SS G_CDS: -0.30 Total: -37.41 kcal Atomic # 8 Polarization: -8.21 SS G_CDS: -0.45 Total: -8.66 kcal Atomic # 14 Polarization: 22.52 SS G_CDS: -5.02 Total: 17.50 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -32.28 -9.47 -41.76 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000298392033.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.655 kcal (2) G-P(sol) polarization free energy of solvation -32.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.756 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds