Wall clock time and date at job start Mon Mar 30 2020 01:43:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09005 * 109.47229 * 2 1 4 4 C 1.53005 * 109.47027 * 240.00697 * 2 1 3 5 5 C 1.50698 * 109.47333 * 174.99703 * 4 2 1 6 6 H 1.08002 * 119.99560 * 0.02562 * 5 4 2 7 7 C 1.37873 * 120.00147 * 179.97438 * 5 4 2 8 8 N 1.31515 * 119.99800 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 120.00263 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.46852 * 359.97438 * 9 7 5 11 11 H 1.48493 * 109.47307 * 119.99821 * 9 7 5 12 12 H 1.48502 * 109.47254 * 240.00087 * 9 7 5 13 13 N 1.46894 * 109.47444 * 120.00466 * 2 1 3 14 14 C 1.46900 * 111.00020 * 58.95495 * 13 2 1 15 15 C 1.46900 * 111.00272 * 294.99759 * 13 2 1 16 16 C 1.52995 * 109.47381 * 189.99988 * 15 13 2 17 17 H 1.09007 * 109.47148 * 305.00176 * 16 15 13 18 18 O 1.42904 * 109.47095 * 64.99880 * 16 15 13 19 19 C 1.52995 * 109.47207 * 185.00172 * 16 15 13 20 20 C 1.50707 * 109.47301 * 174.99824 * 19 16 15 21 21 C 1.38238 * 119.99792 * 90.00016 * 20 19 16 22 22 C 1.38235 * 119.99712 * 179.97438 * 21 20 19 23 23 C 1.38234 * 120.00220 * 359.97124 * 22 21 20 24 24 C 1.38233 * 120.00037 * 0.28719 * 23 22 21 25 25 C 1.38234 * 120.00179 * 269.97953 * 20 19 16 26 26 H 1.09000 * 109.47401 * 59.99025 * 1 2 3 27 27 H 1.08996 * 109.46956 * 179.97438 * 1 2 3 28 28 H 1.09010 * 109.46543 * 299.99265 * 1 2 3 29 29 H 1.08993 * 109.46673 * 295.00221 * 4 2 1 30 30 H 1.09002 * 109.47098 * 54.99366 * 4 2 1 31 31 H 0.96997 * 119.99947 * 179.97438 * 8 7 5 32 32 H 1.09004 * 109.46994 * 296.04409 * 14 13 2 33 33 H 1.09000 * 109.47263 * 56.04065 * 14 13 2 34 34 H 1.09004 * 109.47322 * 176.04686 * 14 13 2 35 35 H 1.09002 * 109.46867 * 70.00086 * 15 13 2 36 36 H 1.09002 * 109.47055 * 309.99836 * 15 13 2 37 37 H 0.96697 * 113.99898 * 60.00393 * 18 16 15 38 38 H 1.09005 * 109.47610 * 55.00128 * 19 16 15 39 39 H 1.09000 * 109.47256 * 294.99469 * 19 16 15 40 40 H 1.08005 * 120.00068 * 359.97438 * 21 20 19 41 41 H 1.07999 * 119.99770 * 179.97438 * 22 21 20 42 42 H 1.08002 * 119.99744 * 180.02562 * 23 22 21 43 43 H 1.07998 * 120.00395 * 179.72811 * 24 23 22 44 44 H 1.07999 * 119.99968 * 359.97438 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2494 5 6 3.5419 -0.6148 -1.3130 6 1 4.0789 -0.0861 -0.5393 7 6 4.2303 -1.1932 -2.3581 8 7 3.5763 -1.8374 -3.2998 9 14 6.0921 -1.0620 -2.4365 10 1 6.5837 -0.2916 -1.2661 11 1 6.6854 -2.4231 -2.4185 12 1 6.4870 -0.3664 -3.6877 13 7 2.0197 -0.6925 1.1993 14 6 1.5284 -2.0762 1.2457 15 6 1.6489 0.0390 2.4180 16 6 2.3791 -0.5665 3.6184 17 1 2.1678 -1.6346 3.6713 18 8 3.7863 -0.3661 3.4706 19 6 1.8993 0.1125 4.9028 20 6 2.5259 -0.5657 6.0939 21 6 3.7383 -0.1189 6.5850 22 6 4.3128 -0.7407 7.6779 23 6 3.6745 -1.8089 8.2799 24 6 2.4647 -2.2591 7.7855 25 6 1.8880 -1.6344 6.6955 26 1 -0.3634 0.5140 -0.8899 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8902 29 1 1.7516 -1.7713 -1.2058 30 1 1.6053 -0.2616 -2.1370 31 1 4.0606 -2.2441 -4.0353 32 1 0.4420 -2.0732 1.3346 33 1 1.8167 -2.5950 0.3315 34 1 1.9619 -2.5870 2.1056 35 1 0.5724 -0.0347 2.5726 36 1 1.9300 1.0868 2.3125 37 1 4.0476 0.5634 3.4168 38 1 0.8141 0.0363 4.9706 39 1 2.1896 1.1630 4.8887 40 1 4.2368 0.7160 6.1149 41 1 5.2602 -0.3919 8.0613 42 1 4.1232 -2.2943 9.1340 43 1 1.9681 -3.0964 8.2531 44 1 0.9404 -1.9830 6.3122 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000298392033.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:31 Heat of formation + Delta-G solvation = -51.068816 kcal Electronic energy + Delta-G solvation = -21690.737687 eV Core-core repulsion = 18606.737930 eV Total energy + Delta-G solvation = -3083.999757 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.45078 -39.53843 -37.66807 -34.90820 -33.72864 -32.49503 -31.69507 -30.00055 -29.26079 -27.66687 -25.84520 -24.79385 -23.39554 -22.44692 -21.81707 -20.29851 -18.35050 -17.81883 -17.14622 -17.03839 -16.69886 -16.45688 -15.87249 -15.76111 -15.37232 -14.97554 -14.62020 -14.42041 -14.19618 -13.97463 -13.78979 -13.53743 -13.30494 -13.17554 -12.95697 -12.70103 -12.59167 -12.37262 -12.29269 -12.15860 -12.02686 -11.87834 -11.76874 -11.54668 -11.10507 -11.06262 -10.74298 -10.46558 -9.74643 -9.47884 -8.80997 -8.08916 -6.12868 0.51615 0.57636 1.40942 1.42853 1.56038 2.48757 2.88882 3.14898 3.28592 3.71286 3.81527 4.03197 4.11745 4.22206 4.23772 4.30228 4.34158 4.35196 4.46754 4.48093 4.58894 4.60698 4.71157 4.75343 4.80186 4.83926 4.92123 4.99981 5.11346 5.21143 5.23097 5.24528 5.28619 5.31696 5.51244 5.63460 5.68363 5.73711 5.79517 5.92282 6.20142 6.34827 6.46260 6.57865 7.01727 7.05073 7.53047 9.03381 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.020136 B = 0.003996 C = 0.003564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1390.222017 B = 7004.657869 C = 7854.428595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.095 3.905 3 H 0.065 0.935 4 C 0.033 3.967 5 C -0.494 4.494 6 H 0.058 0.942 7 C -0.007 4.007 8 N -0.942 5.942 9 Si 0.955 3.045 10 H -0.266 1.266 11 H -0.286 1.286 12 H -0.281 1.281 13 N -0.527 5.527 14 C 0.032 3.968 15 C 0.025 3.975 16 C 0.126 3.874 17 H 0.080 0.920 18 O -0.564 6.564 19 C -0.104 4.104 20 C -0.084 4.084 21 C -0.120 4.120 22 C -0.133 4.133 23 C -0.138 4.138 24 C -0.131 4.131 25 C -0.135 4.135 26 H 0.055 0.945 27 H 0.049 0.951 28 H 0.069 0.931 29 H -0.002 1.002 30 H -0.010 1.010 31 H 0.258 0.742 32 H 0.033 0.967 33 H 0.044 0.956 34 H 0.065 0.935 35 H 0.051 0.949 36 H 0.080 0.920 37 H 0.379 0.621 38 H 0.093 0.907 39 H 0.089 0.911 40 H 0.127 0.873 41 H 0.135 0.865 42 H 0.137 0.863 43 H 0.137 0.863 44 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.032 4.054 22.916 23.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.014 4.014 3 H 0.083 0.917 4 C -0.005 4.005 5 C -0.533 4.533 6 H 0.076 0.924 7 C -0.202 4.202 8 N -0.584 5.584 9 Si 0.781 3.219 10 H -0.190 1.190 11 H -0.212 1.212 12 H -0.207 1.207 13 N -0.250 5.250 14 C -0.116 4.116 15 C -0.103 4.103 16 C 0.066 3.934 17 H 0.098 0.902 18 O -0.370 6.370 19 C -0.142 4.142 20 C -0.084 4.084 21 C -0.138 4.138 22 C -0.151 4.151 23 C -0.155 4.155 24 C -0.149 4.149 25 C -0.153 4.153 26 H 0.074 0.926 27 H 0.068 0.932 28 H 0.088 0.912 29 H 0.016 0.984 30 H 0.009 0.991 31 H 0.066 0.934 32 H 0.051 0.949 33 H 0.063 0.937 34 H 0.083 0.917 35 H 0.069 0.931 36 H 0.098 0.902 37 H 0.227 0.773 38 H 0.112 0.888 39 H 0.108 0.892 40 H 0.145 0.855 41 H 0.152 0.848 42 H 0.155 0.845 43 H 0.155 0.845 44 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -4.480 3.311 22.760 23.431 hybrid contribution 0.046 0.283 -0.687 0.744 sum -4.434 3.593 22.073 22.799 Atomic orbital electron populations 1.22393 0.97274 1.01563 1.02084 1.21626 0.91959 0.97217 0.90556 0.91709 1.19108 0.95205 0.94485 0.91658 1.21530 0.93305 1.32050 1.06393 0.92417 1.25838 1.02758 0.95767 0.95845 1.70098 1.36929 1.38277 1.13140 0.85538 0.80883 0.77567 0.77882 1.18986 1.21202 1.20679 1.61894 1.59885 1.01870 1.01339 1.22289 0.97168 0.90709 1.01480 1.22908 0.98379 0.98614 0.90380 1.21815 0.81034 0.99512 0.91034 0.90181 1.86627 1.22729 1.31625 1.96037 1.21279 1.01455 1.00092 0.91361 1.19921 0.95464 0.96593 0.96457 1.21252 0.95211 1.00784 0.96521 1.21436 1.00508 0.96695 0.96440 1.21434 0.95897 0.97338 1.00878 1.21417 0.96288 1.00314 0.96898 1.21314 1.00854 0.96277 0.96858 0.92625 0.93205 0.91165 0.98419 0.99132 0.93358 0.94862 0.93737 0.91676 0.93113 0.90208 0.77345 0.88845 0.89229 0.85455 0.84756 0.84484 0.84509 0.85210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.65 8.50 71.98 0.61 -5.03 16 2 C 0.09 3.79 2.29 44.92 0.10 3.90 16 3 H 0.06 2.62 8.03 -2.38 -0.02 2.60 16 4 C 0.03 1.71 4.27 29.85 0.13 1.84 16 5 C -0.49 -28.53 8.84 25.60 0.23 -28.31 16 6 H 0.06 3.32 7.74 -2.91 -0.02 3.30 16 7 C -0.01 -0.38 5.46 84.65 0.46 0.08 16 8 N -0.94 -58.77 13.29 21.45 0.28 -58.49 16 9 Si 0.95 46.67 29.54 68.60 2.03 48.69 16 10 H -0.27 -12.57 7.11 99.48 0.71 -11.86 16 11 H -0.29 -13.82 7.11 99.48 0.71 -13.12 16 12 H -0.28 -13.29 7.11 99.48 0.71 -12.58 16 13 N -0.53 -19.36 4.41 -897.04 -3.96 -23.32 16 14 C 0.03 1.14 8.53 127.69 1.09 2.23 16 15 C 0.03 0.67 4.03 86.30 0.35 1.02 16 16 C 0.13 3.10 2.91 30.59 0.09 3.19 16 17 H 0.08 2.23 6.34 -2.38 -0.02 2.22 16 18 O -0.56 -16.49 12.78 -148.98 -1.90 -18.39 16 19 C -0.10 -1.89 5.03 29.85 0.15 -1.74 16 20 C -0.08 -1.75 4.97 -19.86 -0.10 -1.85 16 21 C -0.12 -2.47 9.40 22.27 0.21 -2.26 16 22 C -0.13 -2.55 10.05 22.27 0.22 -2.32 16 23 C -0.14 -2.50 10.05 22.27 0.22 -2.27 16 24 C -0.13 -2.43 10.05 22.27 0.22 -2.20 16 25 C -0.14 -2.69 9.70 22.27 0.22 -2.48 16 26 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 27 H 0.05 1.63 6.48 -2.39 -0.02 1.62 16 28 H 0.07 1.84 6.75 -2.38 -0.02 1.83 16 29 H 0.00 -0.14 6.09 -2.39 -0.01 -0.15 16 30 H -0.01 -0.55 8.14 -2.39 -0.02 -0.56 16 31 H 0.26 15.22 8.31 -92.71 -0.77 14.45 16 32 H 0.03 1.04 6.51 -2.38 -0.02 1.03 16 33 H 0.04 1.95 6.03 -2.39 -0.01 1.93 16 34 H 0.06 2.18 6.37 -2.39 -0.02 2.16 16 35 H 0.05 1.18 6.94 -2.39 -0.02 1.16 16 36 H 0.08 1.98 8.00 -2.39 -0.02 1.96 16 37 H 0.38 8.58 9.05 -74.06 -0.67 7.91 16 38 H 0.09 1.43 8.09 -2.38 -0.02 1.41 16 39 H 0.09 1.38 8.09 -2.39 -0.02 1.36 16 40 H 0.13 2.31 8.06 -2.91 -0.02 2.28 16 41 H 0.13 2.02 8.06 -2.91 -0.02 2.00 16 42 H 0.14 1.83 8.06 -2.91 -0.02 1.81 16 43 H 0.14 1.90 8.06 -2.91 -0.02 1.88 16 44 H 0.13 2.17 8.06 -2.91 -0.02 2.15 16 Total: -1.00 -70.15 350.78 0.95 -69.20 By element: Atomic # 1 Polarization: 18.23 SS G_CDS: 0.30 Total: 18.53 kcal Atomic # 6 Polarization: -40.42 SS G_CDS: 4.20 Total: -36.22 kcal Atomic # 7 Polarization: -78.14 SS G_CDS: -3.67 Total: -81.81 kcal Atomic # 8 Polarization: -16.49 SS G_CDS: -1.90 Total: -18.39 kcal Atomic # 14 Polarization: 46.67 SS G_CDS: 2.03 Total: 48.69 kcal Total: -70.15 0.95 -69.20 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000298392033.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.129 kcal (2) G-P(sol) polarization free energy of solvation -70.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.198 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds