Wall clock time and date at job start Mon Mar 30 2020 01:43:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08999 * 109.46912 * 2 1 4 4 C 1.53006 * 109.47050 * 240.00649 * 2 1 3 5 5 C 1.50694 * 109.47298 * 63.23259 * 4 2 1 6 6 H 1.08001 * 120.00004 * 356.60922 * 5 4 2 7 7 C 1.37877 * 120.00439 * 176.61066 * 5 4 2 8 8 N 1.31519 * 119.99269 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 120.00403 * 179.97438 * 7 5 4 10 10 H 1.48499 * 109.46758 * 60.00558 * 9 7 5 11 11 H 1.48503 * 109.47071 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.47263 * 300.00000 * 9 7 5 13 13 N 1.46896 * 109.47228 * 120.00357 * 2 1 3 14 14 C 1.46905 * 110.99916 * 174.77126 * 13 2 1 15 15 C 1.46899 * 111.00096 * 298.72009 * 13 2 1 16 16 C 1.52995 * 109.47161 * 169.99989 * 15 13 2 17 17 H 1.09004 * 109.47416 * 60.00250 * 16 15 13 18 18 O 1.42902 * 109.47291 * 300.00636 * 16 15 13 19 19 C 1.53002 * 109.47211 * 180.02562 * 16 15 13 20 20 C 1.50706 * 109.47316 * 185.00107 * 19 16 15 21 21 C 1.38240 * 119.99753 * 89.99398 * 20 19 16 22 22 C 1.38228 * 119.99708 * 180.02562 * 21 20 19 23 23 C 1.38244 * 120.00147 * 0.02562 * 22 21 20 24 24 C 1.38235 * 119.99903 * 0.25461 * 23 22 21 25 25 C 1.38232 * 119.99801 * 270.02208 * 20 19 16 26 26 H 1.09001 * 109.47078 * 299.99629 * 1 2 3 27 27 H 1.08995 * 109.46960 * 59.99649 * 1 2 3 28 28 H 1.09006 * 109.46584 * 179.97438 * 1 2 3 29 29 H 1.08993 * 109.46752 * 183.23379 * 4 2 1 30 30 H 1.08996 * 109.46844 * 303.23230 * 4 2 1 31 31 H 0.97001 * 119.99786 * 179.97438 * 8 7 5 32 32 H 1.08994 * 109.47083 * 176.93517 * 14 13 2 33 33 H 1.09004 * 109.46982 * 296.92873 * 14 13 2 34 34 H 1.08995 * 109.47096 * 56.92628 * 14 13 2 35 35 H 1.09005 * 109.47087 * 50.00530 * 15 13 2 36 36 H 1.09000 * 109.47365 * 290.00354 * 15 13 2 37 37 H 0.96700 * 113.99419 * 299.99343 * 18 16 15 38 38 H 1.08999 * 109.47350 * 65.00250 * 19 16 15 39 39 H 1.08997 * 109.46840 * 305.00131 * 19 16 15 40 40 H 1.08000 * 120.00319 * 0.02562 * 21 20 19 41 41 H 1.08002 * 120.00332 * 179.97438 * 22 21 20 42 42 H 1.07999 * 120.00009 * 179.97438 * 23 22 21 43 43 H 1.07995 * 119.99932 * 179.72635 * 24 23 22 44 44 H 1.07995 * 120.00237 * 0.02562 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2494 5 6 1.6042 0.0341 -2.4784 6 1 0.9759 0.9071 -2.3812 7 6 2.0075 -0.3894 -3.7270 8 7 2.7722 -1.4528 -3.8453 9 14 1.4667 0.5464 -5.2506 10 1 1.9560 1.9462 -5.1713 11 1 2.0299 -0.1076 -6.4591 12 1 -0.0160 0.5440 -5.3326 13 7 2.0197 -0.6925 1.1994 14 6 3.4829 -0.8213 1.1724 15 6 1.5739 -0.0091 2.4208 16 6 1.8848 -0.8837 3.6370 17 1 2.9588 -1.0617 3.6917 18 8 1.2009 -2.1324 3.5131 19 6 1.4198 -0.1721 4.9092 20 6 1.8353 -0.9756 6.1147 21 6 3.0612 -0.7444 6.7103 22 6 3.4425 -1.4817 7.8156 23 6 2.5981 -2.4506 8.3251 24 6 1.3748 -2.6857 7.7259 25 6 0.9908 -1.9440 6.6243 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 3.1284 -0.7716 -1.2208 30 1 1.6302 -1.7307 -1.2789 31 1 3.0557 -1.7511 -4.7238 32 1 3.8235 -1.2886 2.0963 33 1 3.7777 -1.4379 0.3232 34 1 3.9329 0.1669 1.0775 35 1 0.4998 0.1688 2.3663 36 1 2.0956 0.9433 2.5153 37 1 0.2389 -2.0502 3.4592 38 1 0.3344 -0.0739 4.8946 39 1 1.8736 0.8177 4.9583 40 1 3.7210 0.0122 6.3121 41 1 4.4004 -1.3015 8.2808 42 1 2.8962 -3.0269 9.1884 43 1 0.7171 -3.4456 8.1212 44 1 0.0335 -2.1252 6.1584 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000298392038.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:34 Heat of formation + Delta-G solvation = -53.292590 kcal Electronic energy + Delta-G solvation = -21386.661436 eV Core-core repulsion = 18302.565249 eV Total energy + Delta-G solvation = -3084.096187 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.44677 -39.47070 -37.60588 -35.09295 -33.73374 -32.74540 -31.69362 -30.41251 -29.27814 -27.24451 -25.73023 -24.83841 -23.39142 -22.43073 -21.83369 -20.60046 -18.69067 -17.76637 -17.20405 -16.94163 -16.54994 -16.20409 -15.91676 -15.86790 -15.50919 -15.28856 -14.68484 -14.26662 -14.19622 -14.14838 -13.72844 -13.48681 -13.30724 -13.13268 -13.03355 -12.71788 -12.60381 -12.54297 -12.37882 -12.11555 -11.97843 -11.77746 -11.76855 -11.52386 -11.26628 -11.03460 -10.75762 -10.51297 -9.74305 -9.48409 -9.06969 -8.17273 -6.27262 0.51635 0.58019 1.40116 1.43127 1.50761 2.41181 2.87288 3.09812 3.16270 3.68899 3.78544 4.02039 4.08500 4.20376 4.22045 4.25612 4.34675 4.36442 4.42443 4.51402 4.59476 4.68169 4.69795 4.71418 4.80658 4.83654 4.92422 5.03580 5.11182 5.18102 5.23918 5.24823 5.28027 5.43188 5.52131 5.63878 5.68925 5.72308 5.79291 5.81632 6.13423 6.20292 6.36645 6.40681 6.89407 7.03226 7.40993 8.94846 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.045560 B = 0.002944 C = 0.002903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 614.427796 B = 9507.740172 C = 9644.480269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.094 3.906 3 H 0.019 0.981 4 C 0.040 3.960 5 C -0.533 4.533 6 H 0.063 0.937 7 C -0.001 4.001 8 N -0.934 5.934 9 Si 0.963 3.037 10 H -0.267 1.267 11 H -0.286 1.286 12 H -0.266 1.266 13 N -0.537 5.537 14 C 0.031 3.969 15 C 0.019 3.981 16 C 0.128 3.872 17 H 0.081 0.919 18 O -0.561 6.561 19 C -0.105 4.105 20 C -0.085 4.085 21 C -0.136 4.136 22 C -0.131 4.131 23 C -0.137 4.137 24 C -0.132 4.132 25 C -0.118 4.118 26 H 0.069 0.931 27 H 0.052 0.948 28 H 0.047 0.953 29 H -0.006 1.006 30 H -0.014 1.014 31 H 0.262 0.738 32 H 0.077 0.923 33 H 0.046 0.954 34 H 0.019 0.981 35 H 0.092 0.908 36 H 0.041 0.959 37 H 0.380 0.620 38 H 0.091 0.909 39 H 0.090 0.910 40 H 0.128 0.872 41 H 0.136 0.864 42 H 0.137 0.863 43 H 0.135 0.865 44 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.227 2.740 24.020 24.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.014 4.014 3 H 0.037 0.963 4 C 0.002 3.998 5 C -0.571 4.571 6 H 0.081 0.919 7 C -0.199 4.199 8 N -0.575 5.575 9 Si 0.787 3.213 10 H -0.192 1.192 11 H -0.211 1.211 12 H -0.190 1.190 13 N -0.261 5.261 14 C -0.117 4.117 15 C -0.109 4.109 16 C 0.069 3.931 17 H 0.099 0.901 18 O -0.367 6.367 19 C -0.143 4.143 20 C -0.085 4.085 21 C -0.154 4.154 22 C -0.149 4.149 23 C -0.155 4.155 24 C -0.150 4.150 25 C -0.136 4.136 26 H 0.088 0.912 27 H 0.071 0.929 28 H 0.066 0.934 29 H 0.012 0.988 30 H 0.005 0.995 31 H 0.071 0.929 32 H 0.096 0.904 33 H 0.064 0.936 34 H 0.038 0.962 35 H 0.110 0.890 36 H 0.059 0.941 37 H 0.228 0.772 38 H 0.110 0.890 39 H 0.109 0.891 40 H 0.146 0.854 41 H 0.154 0.846 42 H 0.155 0.845 43 H 0.153 0.847 44 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -2.739 1.935 23.914 24.148 hybrid contribution 0.036 1.129 -1.235 1.674 sum -2.703 3.065 22.679 23.044 Atomic orbital electron populations 1.21672 0.93651 1.01428 1.01124 1.21577 0.96290 0.93963 0.89568 0.96341 1.19001 0.94615 0.94437 0.91713 1.21598 1.30963 1.12457 0.92122 0.91864 1.25959 0.95192 0.96028 1.02685 1.70118 1.36950 1.25882 1.24529 0.85536 0.78949 0.78740 0.78034 1.19212 1.21126 1.19043 1.61949 1.10652 1.51686 1.01845 1.22306 0.88152 0.99405 1.01872 1.23001 1.02161 0.95572 0.90146 1.21766 0.96766 0.83811 0.90792 0.90113 1.86603 1.24031 1.29821 1.96206 1.21275 1.03019 0.98681 0.91310 1.19907 0.94818 0.97329 0.96443 1.21307 0.96419 1.00805 0.96845 1.21407 1.00386 0.96411 0.96734 1.21438 0.94655 0.98559 1.00849 1.21443 0.97259 0.99878 0.96413 1.21250 1.00299 0.95610 0.96395 0.91242 0.92930 0.93420 0.98810 0.99516 0.92938 0.90423 0.93552 0.96247 0.88956 0.94072 0.77157 0.89011 0.89126 0.85395 0.84630 0.84517 0.84662 0.85233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.43 8.81 71.98 0.63 -3.79 16 2 C 0.09 3.92 2.12 44.92 0.10 4.02 16 3 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 4 C 0.04 2.14 4.17 29.85 0.12 2.26 16 5 C -0.53 -30.27 8.46 25.60 0.22 -30.06 16 6 H 0.06 3.40 6.81 -2.91 -0.02 3.38 16 7 C 0.00 -0.07 5.46 84.65 0.46 0.40 16 8 N -0.93 -57.90 13.29 21.45 0.28 -57.62 16 9 Si 0.96 44.51 29.54 68.60 2.03 46.54 16 10 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 11 H -0.29 -13.03 7.11 99.48 0.71 -12.32 16 12 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 13 N -0.54 -19.34 4.50 -897.04 -4.03 -23.37 16 14 C 0.03 1.12 8.83 127.69 1.13 2.25 16 15 C 0.02 0.50 4.45 86.30 0.38 0.88 16 16 C 0.13 2.93 2.84 30.59 0.09 3.02 16 17 H 0.08 2.08 6.42 -2.38 -0.02 2.07 16 18 O -0.56 -14.48 12.70 -148.98 -1.89 -16.38 16 19 C -0.10 -1.79 5.03 29.85 0.15 -1.64 16 20 C -0.08 -1.65 4.97 -19.86 -0.10 -1.75 16 21 C -0.14 -2.58 9.70 22.27 0.22 -2.36 16 22 C -0.13 -2.30 10.05 22.27 0.22 -2.08 16 23 C -0.14 -2.32 10.05 22.27 0.22 -2.10 16 24 C -0.13 -2.33 10.05 22.27 0.22 -2.10 16 25 C -0.12 -2.22 9.40 22.27 0.21 -2.01 16 26 H 0.07 1.97 6.23 -2.39 -0.01 1.96 16 27 H 0.05 2.04 6.76 -2.39 -0.02 2.02 16 28 H 0.05 1.80 8.14 -2.38 -0.02 1.78 16 29 H -0.01 -0.37 6.21 -2.39 -0.01 -0.39 16 30 H -0.01 -0.82 8.14 -2.39 -0.02 -0.84 16 31 H 0.26 15.31 8.31 -92.71 -0.77 14.54 16 32 H 0.08 2.43 6.18 -2.39 -0.01 2.42 16 33 H 0.05 1.97 6.34 -2.38 -0.02 1.96 16 34 H 0.02 0.67 8.14 -2.39 -0.02 0.65 16 35 H 0.09 2.15 5.88 -2.38 -0.01 2.14 16 36 H 0.04 1.03 8.12 -2.39 -0.02 1.01 16 37 H 0.38 7.32 9.04 -74.06 -0.67 6.65 16 38 H 0.09 1.28 8.09 -2.39 -0.02 1.26 16 39 H 0.09 1.36 8.09 -2.39 -0.02 1.34 16 40 H 0.13 2.07 8.06 -2.91 -0.02 2.05 16 41 H 0.14 1.79 8.06 -2.91 -0.02 1.76 16 42 H 0.14 1.67 8.06 -2.91 -0.02 1.65 16 43 H 0.14 1.81 8.06 -2.91 -0.02 1.79 16 44 H 0.13 2.07 8.06 -2.91 -0.02 2.05 16 Total: -1.00 -69.27 351.04 0.97 -68.30 By element: Atomic # 1 Polarization: 17.29 SS G_CDS: 0.30 Total: 17.59 kcal Atomic # 6 Polarization: -39.34 SS G_CDS: 4.28 Total: -35.07 kcal Atomic # 7 Polarization: -77.24 SS G_CDS: -3.75 Total: -80.99 kcal Atomic # 8 Polarization: -14.48 SS G_CDS: -1.89 Total: -16.38 kcal Atomic # 14 Polarization: 44.51 SS G_CDS: 2.03 Total: 46.54 kcal Total: -69.27 0.97 -68.30 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000298392038.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.007 kcal (2) G-P(sol) polarization free energy of solvation -69.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.300 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds