Wall clock time and date at job start Mon Mar 30 2020 01:43:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09001 * 109.47533 * 2 1 4 4 C 1.53002 * 109.46913 * 119.99625 * 2 1 3 5 5 C 1.50708 * 109.47087 * 185.00250 * 4 2 1 6 6 H 1.07993 * 119.99714 * 359.97438 * 5 4 2 7 7 C 1.37872 * 119.99809 * 180.02562 * 5 4 2 8 8 N 1.31511 * 120.00001 * 179.97438 * 7 5 4 9 9 Si 1.86805 * 120.00363 * 359.97438 * 7 5 4 10 10 H 1.48498 * 109.47001 * 89.99836 * 9 7 5 11 11 H 1.48502 * 109.47261 * 210.00485 * 9 7 5 12 12 H 1.48505 * 109.46691 * 330.00586 * 9 7 5 13 13 N 1.46904 * 109.47441 * 239.99812 * 2 1 3 14 14 C 1.46903 * 110.99850 * 306.04753 * 13 2 1 15 15 C 1.46897 * 110.99808 * 70.00367 * 13 2 1 16 16 C 1.52999 * 109.47374 * 75.71565 * 15 13 2 17 17 H 1.08996 * 109.47152 * 301.72006 * 16 15 13 18 18 O 1.42898 * 109.46881 * 61.71868 * 16 15 13 19 19 C 1.52999 * 109.46696 * 181.71700 * 16 15 13 20 20 C 1.50703 * 109.46719 * 175.00183 * 19 16 15 21 21 C 1.38240 * 119.99904 * 269.72845 * 20 19 16 22 22 C 1.38235 * 119.99485 * 179.76768 * 21 20 19 23 23 C 1.38226 * 120.00406 * 0.50525 * 22 21 20 24 24 C 1.38232 * 120.00001 * 359.74772 * 23 22 21 25 25 C 1.38233 * 120.00005 * 359.97438 * 24 23 22 26 26 H 1.09005 * 109.46769 * 60.00042 * 1 2 3 27 27 H 1.09001 * 109.47533 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47502 * 300.00574 * 1 2 3 29 29 H 1.08996 * 109.47608 * 305.00118 * 4 2 1 30 30 H 1.09006 * 109.47261 * 65.00427 * 4 2 1 31 31 H 0.97006 * 120.00041 * 179.97438 * 8 7 5 32 32 H 1.08997 * 109.46813 * 65.70256 * 14 13 2 33 33 H 1.08996 * 109.46781 * 185.70517 * 14 13 2 34 34 H 1.09003 * 109.46779 * 305.70644 * 14 13 2 35 35 H 1.09000 * 109.46640 * 195.72022 * 15 13 2 36 36 H 1.09003 * 109.46718 * 315.71535 * 15 13 2 37 37 H 0.96704 * 113.99878 * 60.00314 * 18 16 15 38 38 H 1.09000 * 109.47324 * 294.99921 * 19 16 15 39 39 H 1.08994 * 109.47471 * 55.00724 * 19 16 15 40 40 H 1.07991 * 119.99831 * 359.97438 * 21 20 19 41 41 H 1.08007 * 119.99583 * 180.22874 * 22 21 20 42 42 H 1.08001 * 120.00374 * 179.72562 * 23 22 21 43 43 H 1.07997 * 120.00255 * 179.97438 * 24 23 22 44 44 H 1.08003 * 120.00075 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 3.5419 -0.6148 1.3129 6 1 4.0789 -0.0861 0.5393 7 6 4.2303 -1.1934 2.3580 8 7 5.5410 -1.1010 2.4132 9 14 3.3014 -2.1085 3.6956 10 1 3.1698 -3.5384 3.3172 11 1 4.0451 -2.0017 4.9765 12 1 1.9506 -1.5127 3.8563 13 7 2.0197 -0.6925 -1.1994 14 6 1.4343 -2.0355 -1.3078 15 6 1.7530 0.0972 -2.4090 16 6 2.7470 1.2575 -2.4900 17 1 2.6586 1.8747 -1.5960 18 8 4.0760 0.7406 -2.5824 19 6 2.4421 2.1047 -3.7270 20 6 3.3404 3.3147 -3.7409 21 6 2.9322 4.4856 -3.1299 22 6 3.7583 5.5940 -3.1386 23 6 4.9879 5.5347 -3.7672 24 6 5.3938 4.3654 -4.3827 25 6 4.5703 3.2553 -4.3691 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3634 0.5139 0.8899 29 1 1.6053 -0.2617 2.1370 30 1 1.7516 -1.7715 1.2057 31 1 6.0253 -1.5077 3.1487 32 1 0.3599 -1.9514 -1.4710 33 1 1.8890 -2.5634 -2.1460 34 1 1.6198 -2.5880 -0.3866 35 1 1.8626 -0.5373 -3.2885 36 1 0.7374 0.4909 -2.3692 37 1 4.2273 0.1807 -3.3562 38 1 2.6166 1.5123 -4.6252 39 1 1.4008 2.4257 -3.7000 40 1 1.9695 4.5334 -2.6429 41 1 3.4410 6.5077 -2.6580 42 1 5.6314 6.4020 -3.7778 43 1 6.3544 4.3192 -4.8742 44 1 4.8872 2.3418 -4.8504 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000298392042.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:37 Heat of formation + Delta-G solvation = -47.600158 kcal Electronic energy + Delta-G solvation = -21984.727612 eV Core-core repulsion = 18900.878267 eV Total energy + Delta-G solvation = -3083.849345 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.45371 -39.56298 -37.61929 -34.83711 -33.72321 -32.64903 -31.70504 -30.39602 -29.58082 -27.53377 -25.64798 -24.28782 -23.41509 -22.80466 -21.83085 -20.17223 -18.73601 -17.85150 -17.24934 -16.92098 -16.58840 -16.28788 -15.88148 -15.71135 -15.66898 -15.06756 -14.62235 -14.37732 -14.19482 -14.06433 -13.87858 -13.61997 -13.35326 -13.19325 -12.91064 -12.73355 -12.63538 -12.50504 -12.26645 -12.06259 -11.86715 -11.77372 -11.69641 -11.41061 -11.33719 -11.09743 -10.80466 -10.63002 -9.75061 -9.48199 -8.75131 -8.12821 -6.11583 0.51406 0.57171 1.36276 1.38489 1.49267 2.43769 2.88735 3.13303 3.26872 3.73309 3.82142 4.03817 4.08908 4.15349 4.21522 4.32139 4.32927 4.36796 4.46644 4.54082 4.56624 4.60849 4.70623 4.72979 4.78796 4.80905 4.91005 4.95755 5.11779 5.14734 5.17648 5.23559 5.26290 5.26778 5.32672 5.58802 5.62649 5.67258 5.78550 5.79051 6.19949 6.41076 6.50225 6.60553 6.99189 7.12778 7.48335 9.05102 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.018158 B = 0.004598 C = 0.004119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1541.669998 B = 6088.682238 C = 6796.800280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.098 3.902 3 H 0.053 0.947 4 C -0.004 4.004 5 C -0.484 4.484 6 H 0.033 0.967 7 C -0.006 4.006 8 N -0.960 5.960 9 Si 0.944 3.056 10 H -0.271 1.271 11 H -0.290 1.290 12 H -0.248 1.248 13 N -0.536 5.536 14 C 0.030 3.970 15 C 0.026 3.974 16 C 0.125 3.875 17 H 0.061 0.939 18 O -0.564 6.564 19 C -0.101 4.101 20 C -0.086 4.086 21 C -0.137 4.137 22 C -0.132 4.132 23 C -0.139 4.139 24 C -0.134 4.134 25 C -0.120 4.120 26 H 0.068 0.932 27 H 0.061 0.939 28 H 0.060 0.940 29 H 0.016 0.984 30 H 0.018 0.982 31 H 0.259 0.741 32 H 0.040 0.960 33 H 0.069 0.931 34 H 0.049 0.951 35 H 0.090 0.910 36 H 0.057 0.943 37 H 0.375 0.625 38 H 0.094 0.906 39 H 0.095 0.905 40 H 0.129 0.871 41 H 0.137 0.863 42 H 0.138 0.862 43 H 0.136 0.864 44 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.605 7.980 -16.012 20.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.010 4.010 3 H 0.071 0.929 4 C -0.042 4.042 5 C -0.522 4.522 6 H 0.052 0.948 7 C -0.200 4.200 8 N -0.603 5.603 9 Si 0.768 3.232 10 H -0.196 1.196 11 H -0.216 1.216 12 H -0.171 1.171 13 N -0.259 5.259 14 C -0.118 4.118 15 C -0.102 4.102 16 C 0.066 3.934 17 H 0.079 0.921 18 O -0.369 6.369 19 C -0.139 4.139 20 C -0.086 4.086 21 C -0.155 4.155 22 C -0.150 4.150 23 C -0.157 4.157 24 C -0.152 4.152 25 C -0.138 4.138 26 H 0.087 0.913 27 H 0.080 0.920 28 H 0.079 0.921 29 H 0.034 0.966 30 H 0.036 0.964 31 H 0.068 0.932 32 H 0.058 0.942 33 H 0.087 0.913 34 H 0.068 0.932 35 H 0.108 0.892 36 H 0.075 0.925 37 H 0.223 0.777 38 H 0.112 0.888 39 H 0.113 0.887 40 H 0.147 0.853 41 H 0.155 0.845 42 H 0.156 0.844 43 H 0.153 0.847 44 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -9.898 8.208 -15.315 19.997 hybrid contribution -0.503 -0.611 0.441 0.906 sum -10.401 7.597 -14.874 19.676 Atomic orbital electron populations 1.22417 0.96439 1.02335 1.02388 1.21453 0.92184 0.96881 0.90485 0.92904 1.19637 0.94608 0.95858 0.94070 1.21305 0.91988 1.32062 1.06851 0.94826 1.25970 0.95470 0.97801 1.00779 1.70117 1.08541 1.48202 1.33469 0.85764 0.79657 0.79400 0.78363 1.19600 1.21614 1.17141 1.61829 1.59576 1.02782 1.01675 1.22341 0.97137 0.90474 1.01872 1.22876 0.97893 0.95973 0.93432 1.21759 0.82408 0.92690 0.96591 0.92114 1.86758 1.29942 1.69477 1.50726 1.21279 0.99544 0.94241 0.98834 1.19970 0.95834 0.95169 0.97625 1.21323 1.00834 0.93335 1.00025 1.21419 0.94828 0.99149 0.99637 1.21436 0.96920 0.98813 0.98487 1.21448 1.00222 0.93441 1.00053 1.21258 0.93970 0.98782 0.99820 0.91316 0.92026 0.92061 0.96596 0.96360 0.93248 0.94173 0.91268 0.93224 0.89208 0.92548 0.77744 0.88755 0.88660 0.85316 0.84520 0.84404 0.84655 0.85319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.14 8.47 71.98 0.61 -4.53 16 2 C 0.10 3.82 2.17 44.91 0.10 3.92 16 3 H 0.05 2.25 6.60 -2.39 -0.02 2.23 16 4 C 0.00 -0.20 3.44 29.85 0.10 -0.10 16 5 C -0.48 -29.04 9.39 25.60 0.24 -28.80 16 6 H 0.03 2.31 7.99 -2.91 -0.02 2.29 16 7 C -0.01 -0.37 5.47 84.65 0.46 0.10 16 8 N -0.96 -63.79 13.96 21.45 0.30 -63.49 16 9 Si 0.94 46.32 27.47 68.60 1.88 48.20 16 10 H -0.27 -12.77 7.11 99.48 0.71 -12.07 16 11 H -0.29 -14.10 7.11 99.48 0.71 -13.40 16 12 H -0.25 -11.19 6.54 99.48 0.65 -10.54 16 13 N -0.54 -19.28 4.25 -897.05 -3.82 -23.09 16 14 C 0.03 0.93 8.59 127.69 1.10 2.03 16 15 C 0.03 0.70 4.54 86.30 0.39 1.09 16 16 C 0.13 3.66 3.02 30.59 0.09 3.75 16 17 H 0.06 2.21 6.74 -2.39 -0.02 2.19 16 18 O -0.56 -19.92 12.73 -148.98 -1.90 -21.81 16 19 C -0.10 -2.13 5.03 29.85 0.15 -1.98 16 20 C -0.09 -2.14 4.97 -19.86 -0.10 -2.24 16 21 C -0.14 -3.36 9.70 22.27 0.22 -3.14 16 22 C -0.13 -3.04 10.05 22.27 0.22 -2.82 16 23 C -0.14 -3.11 10.05 22.27 0.22 -2.88 16 24 C -0.13 -3.12 10.05 22.27 0.22 -2.89 16 25 C -0.12 -2.97 9.40 22.27 0.21 -2.76 16 26 H 0.07 1.65 6.45 -2.38 -0.02 1.64 16 27 H 0.06 1.70 6.45 -2.39 -0.02 1.69 16 28 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 29 H 0.02 0.75 7.20 -2.39 -0.02 0.74 16 30 H 0.02 0.85 5.66 -2.38 -0.01 0.84 16 31 H 0.26 16.12 8.31 -92.70 -0.77 15.35 16 32 H 0.04 1.04 6.57 -2.39 -0.02 1.02 16 33 H 0.07 1.95 8.10 -2.39 -0.02 1.93 16 34 H 0.05 1.81 6.14 -2.39 -0.01 1.79 16 35 H 0.09 1.98 7.91 -2.39 -0.02 1.96 16 36 H 0.06 1.29 6.18 -2.39 -0.01 1.28 16 37 H 0.38 9.92 9.05 -74.05 -0.67 9.25 16 38 H 0.09 1.58 8.09 -2.39 -0.02 1.56 16 39 H 0.09 1.65 8.08 -2.39 -0.02 1.63 16 40 H 0.13 2.73 8.06 -2.92 -0.02 2.71 16 41 H 0.14 2.49 8.06 -2.91 -0.02 2.46 16 42 H 0.14 2.38 8.06 -2.91 -0.02 2.36 16 43 H 0.14 2.54 8.06 -2.91 -0.02 2.52 16 44 H 0.13 2.77 8.06 -2.91 -0.02 2.75 16 Total: -1.00 -76.54 347.44 0.96 -75.57 By element: Atomic # 1 Polarization: 25.64 SS G_CDS: 0.25 Total: 25.89 kcal Atomic # 6 Polarization: -45.50 SS G_CDS: 4.24 Total: -41.26 kcal Atomic # 7 Polarization: -83.07 SS G_CDS: -3.52 Total: -86.59 kcal Atomic # 8 Polarization: -19.92 SS G_CDS: -1.90 Total: -21.81 kcal Atomic # 14 Polarization: 46.32 SS G_CDS: 1.88 Total: 48.20 kcal Total: -76.54 0.96 -75.57 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000298392042.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.972 kcal (2) G-P(sol) polarization free energy of solvation -76.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.573 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds