Wall clock time and date at job start Mon Mar 30 2020 02:11:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42910 * 109.46797 * 2 1 4 4 C 1.35896 * 116.99840 * 179.97438 * 3 2 1 5 5 C 1.38738 * 120.05259 * 179.97438 * 4 3 2 6 6 C 1.38145 * 119.94097 * 180.02562 * 5 4 3 7 7 C 1.38270 * 120.05643 * 0.02562 * 6 5 4 8 8 C 1.50701 * 119.94192 * 179.97438 * 7 6 5 9 9 N 1.46891 * 109.47003 * 95.76913 * 8 7 6 10 10 C 1.46901 * 111.00347 * 287.75758 * 9 8 7 11 11 C 1.50699 * 109.47281 * 169.99920 * 10 9 8 12 12 H 1.08003 * 120.00166 * 0.02562 * 11 10 9 13 13 C 1.37873 * 119.99942 * 179.97438 * 11 10 9 14 14 N 1.31518 * 120.00079 * 0.02562 * 13 11 10 15 15 Si 1.86804 * 119.99985 * 180.02562 * 13 11 10 16 16 H 1.48503 * 109.46709 * 90.00234 * 15 13 11 17 17 H 1.48501 * 109.47187 * 209.99983 * 15 13 11 18 18 H 1.48491 * 109.47173 * 330.00141 * 15 13 11 19 19 C 1.46902 * 110.99862 * 163.80286 * 9 8 7 20 20 C 1.53003 * 109.47140 * 294.63565 * 19 9 8 21 21 C 1.52997 * 109.47390 * 54.63817 * 19 9 8 22 22 C 1.38264 * 120.11081 * 0.25508 * 7 6 5 23 23 C 1.38142 * 120.05599 * 359.45026 * 22 7 6 24 24 H 1.09007 * 109.47274 * 60.00529 * 1 2 3 25 25 H 1.09008 * 109.46829 * 179.97438 * 1 2 3 26 26 H 1.08991 * 109.47451 * 299.99789 * 1 2 3 27 27 H 1.08991 * 109.47451 * 240.00211 * 2 1 3 28 28 H 1.08994 * 109.47065 * 119.99595 * 2 1 3 29 29 H 1.07997 * 120.02897 * 0.02562 * 5 4 3 30 30 H 1.08003 * 119.97056 * 180.02562 * 6 5 4 31 31 H 1.08998 * 109.47406 * 335.76874 * 8 7 6 32 32 H 1.09004 * 109.47004 * 215.76754 * 8 7 6 33 33 H 1.09003 * 109.46950 * 290.00032 * 10 9 8 34 34 H 1.09000 * 109.46588 * 50.00184 * 10 9 8 35 35 H 0.97001 * 120.00190 * 180.02562 * 14 13 11 36 36 H 1.09008 * 109.47000 * 174.63690 * 19 9 8 37 37 H 1.08993 * 109.46708 * 66.29901 * 20 19 9 38 38 H 1.09001 * 109.46612 * 186.29569 * 20 19 9 39 39 H 1.08998 * 109.47232 * 306.29277 * 20 19 9 40 40 H 1.09002 * 109.47081 * 59.99483 * 21 19 9 41 41 H 1.08994 * 109.47772 * 179.97438 * 21 19 9 42 42 H 1.08997 * 109.46866 * 300.00360 * 21 19 9 43 43 H 1.08006 * 119.96936 * 179.69877 * 22 7 6 44 44 H 1.08003 * 120.02674 * 180.24936 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3474 0.0000 4 6 3.3535 1.5255 0.0005 5 6 3.8849 2.8071 0.0000 6 6 5.2548 2.9854 0.0001 7 6 6.0961 1.8881 0.0000 8 6 7.5901 2.0857 -0.0005 9 7 8.0942 2.0122 1.3772 10 6 7.7155 3.2086 2.1409 11 6 8.0301 2.9942 3.5991 12 1 8.4680 2.0625 3.9257 13 6 7.7599 3.9878 4.5159 14 7 7.2271 5.1225 4.1181 15 14 8.1505 3.7223 6.3233 16 1 9.5340 4.1834 6.6035 17 1 7.1932 4.4948 7.1553 18 1 8.0348 2.2779 6.6477 19 6 9.5498 1.8149 1.3953 20 6 9.8868 0.4483 0.7955 21 6 10.2237 2.9138 0.5713 22 6 5.5689 0.6099 -0.0053 23 6 4.1998 0.4262 0.0008 24 1 -0.3634 0.5138 -0.8901 25 1 -0.3633 -1.0278 -0.0005 26 1 -0.3634 0.5137 0.8899 27 1 1.8933 -0.5137 -0.8899 28 1 1.8933 -0.5137 0.8900 29 1 3.2282 3.6644 -0.0004 30 1 5.6690 3.9829 0.0001 31 1 7.8273 3.0622 -0.4226 32 1 8.0594 1.3065 -0.6012 33 1 8.2749 4.0679 1.7711 34 1 6.6476 3.3920 2.0228 35 1 7.0374 5.8217 4.7631 36 1 9.9097 1.8593 2.4234 37 1 9.6284 0.4427 -0.2634 38 1 10.9532 0.2542 0.9103 39 1 9.3190 -0.3253 1.3123 40 1 9.9836 3.8874 0.9986 41 1 11.3037 2.7678 0.5851 42 1 9.8638 2.8696 -0.4566 43 1 6.2281 -0.2456 -0.0102 44 1 3.7885 -0.5725 0.0007 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000299414703.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:38 Heat of formation + Delta-G solvation = -36.625066 kcal Electronic energy + Delta-G solvation = -21827.720468 eV Core-core repulsion = 18744.347039 eV Total energy + Delta-G solvation = -3083.373429 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.11624 -39.65022 -38.06700 -34.85535 -33.38897 -32.45305 -31.73984 -31.02854 -28.58299 -27.93541 -25.97830 -24.82938 -24.03581 -22.87626 -22.07576 -20.21672 -19.16606 -18.29138 -17.24587 -16.99408 -16.90598 -16.46799 -16.02380 -15.58094 -15.10896 -15.00403 -14.64253 -14.38304 -14.29123 -14.18287 -13.97991 -13.53429 -13.32444 -13.18475 -12.93011 -12.70818 -12.63259 -12.58169 -12.47779 -12.33732 -12.25516 -11.97863 -11.69492 -11.62478 -11.55622 -11.33116 -11.08389 -10.56447 -9.86260 -9.02275 -8.81057 -8.15916 -6.23881 0.46420 0.52684 1.39065 1.40552 1.51624 2.30860 2.41444 2.80960 3.16918 3.54741 3.88059 3.98698 4.08632 4.08897 4.15717 4.19538 4.35983 4.39507 4.41224 4.50428 4.55652 4.63487 4.68781 4.79617 4.84415 4.89840 4.94992 4.96206 5.05682 5.12109 5.17555 5.22067 5.31346 5.33771 5.37701 5.44824 5.52612 5.59704 5.71351 5.81750 5.89572 6.15275 6.49728 6.53721 6.76055 6.93591 7.44612 8.94667 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.014050 B = 0.005075 C = 0.004158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1992.347060 B = 5516.373149 C = 6732.350325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.043 3.957 3 O -0.335 6.335 4 C 0.115 3.885 5 C -0.169 4.169 6 C -0.082 4.082 7 C -0.114 4.114 8 C 0.097 3.903 9 N -0.529 5.529 10 C 0.207 3.793 11 C -0.517 4.517 12 H 0.058 0.942 13 C 0.002 3.998 14 N -0.934 5.934 15 Si 0.961 3.039 16 H -0.272 1.272 17 H -0.285 1.285 18 H -0.266 1.266 19 C 0.074 3.926 20 C -0.130 4.130 21 C -0.173 4.173 22 C -0.062 4.062 23 C -0.208 4.208 24 H 0.064 0.936 25 H 0.103 0.897 26 H 0.058 0.942 27 H 0.075 0.925 28 H 0.065 0.935 29 H 0.127 0.873 30 H 0.111 0.889 31 H 0.023 0.977 32 H 0.100 0.900 33 H -0.035 1.035 34 H 0.010 0.990 35 H 0.261 0.739 36 H 0.061 0.939 37 H 0.064 0.936 38 H 0.070 0.930 39 H 0.055 0.945 40 H 0.025 0.975 41 H 0.072 0.928 42 H 0.062 0.938 43 H 0.143 0.857 44 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.555 -12.126 -11.244 17.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.031 4.031 3 O -0.250 6.250 4 C 0.069 3.931 5 C -0.188 4.188 6 C -0.101 4.101 7 C -0.115 4.115 8 C -0.031 4.031 9 N -0.253 5.253 10 C 0.081 3.919 11 C -0.555 4.555 12 H 0.077 0.923 13 C -0.195 4.195 14 N -0.575 5.575 15 Si 0.786 3.214 16 H -0.198 1.198 17 H -0.210 1.210 18 H -0.191 1.191 19 C -0.034 4.034 20 C -0.187 4.187 21 C -0.231 4.231 22 C -0.080 4.080 23 C -0.226 4.226 24 H 0.083 0.917 25 H 0.121 0.879 26 H 0.077 0.923 27 H 0.094 0.906 28 H 0.083 0.917 29 H 0.145 0.855 30 H 0.129 0.871 31 H 0.041 0.959 32 H 0.118 0.882 33 H -0.017 1.017 34 H 0.028 0.972 35 H 0.070 0.930 36 H 0.080 0.920 37 H 0.083 0.917 38 H 0.089 0.911 39 H 0.075 0.925 40 H 0.045 0.955 41 H 0.091 0.909 42 H 0.081 0.919 43 H 0.161 0.839 44 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -5.986 -12.245 -10.953 17.486 hybrid contribution 0.490 1.342 0.840 1.657 sum -5.496 -10.903 -10.114 15.854 Atomic orbital electron populations 1.21805 0.91372 1.04237 1.03066 1.23077 0.96969 0.80820 1.02257 1.86032 1.18687 1.31442 1.88868 1.19015 0.82732 0.94161 0.97159 1.20453 0.94964 0.95634 1.07701 1.20915 0.92775 0.98757 0.97614 1.19860 0.95660 0.93541 1.02432 1.21008 0.90971 1.00093 0.90996 1.62295 1.11848 1.40100 1.11077 1.19385 0.94429 0.85900 0.92222 1.21484 1.40166 1.00603 0.93258 0.92343 1.25820 0.95306 0.94883 1.03504 1.70088 1.45026 1.06452 1.35896 0.85513 0.78022 0.78376 0.79518 1.19796 1.21024 1.19072 1.21678 0.86906 0.95557 0.99279 1.21781 1.01472 0.94868 1.00612 1.22340 1.01613 0.99017 1.00175 1.20969 0.94572 0.96641 0.95868 1.21420 0.93957 0.98554 1.08694 0.91654 0.87885 0.92304 0.90637 0.91677 0.85455 0.87136 0.95866 0.88228 1.01726 0.97240 0.92992 0.92047 0.91740 0.91083 0.92540 0.95533 0.90922 0.91929 0.83933 0.83022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.19 10.28 71.98 0.74 -1.45 16 2 C 0.04 0.85 5.46 71.98 0.39 1.24 16 3 O -0.34 -9.72 10.14 -92.38 -0.94 -10.66 16 4 C 0.11 3.69 6.69 22.51 0.15 3.84 16 5 C -0.17 -6.00 9.99 22.37 0.22 -5.78 16 6 C -0.08 -3.11 8.28 22.26 0.18 -2.93 16 7 C -0.11 -4.11 4.93 -19.85 -0.10 -4.21 16 8 C 0.10 3.45 3.86 85.56 0.33 3.78 16 9 N -0.53 -22.49 4.39 -880.06 -3.87 -26.36 16 10 C 0.21 11.09 4.43 85.56 0.38 11.47 16 11 C -0.52 -29.81 8.38 25.60 0.21 -29.60 16 12 H 0.06 3.33 7.17 -2.91 -0.02 3.31 16 13 C 0.00 0.14 5.46 84.65 0.46 0.61 16 14 N -0.93 -57.46 13.29 21.45 0.28 -57.17 16 15 Si 0.96 45.46 29.54 68.60 2.03 47.48 16 16 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 17 H -0.28 -13.25 7.11 99.48 0.71 -12.54 16 18 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 19 C 0.07 2.76 2.78 44.92 0.13 2.88 16 20 C -0.13 -3.57 8.99 71.98 0.65 -2.92 16 21 C -0.17 -5.92 8.51 71.98 0.61 -5.31 16 22 C -0.06 -1.92 9.72 22.25 0.22 -1.70 16 23 C -0.21 -5.97 9.04 22.37 0.20 -5.77 16 24 H 0.06 0.96 8.14 -2.38 -0.02 0.94 16 25 H 0.10 0.96 8.14 -2.38 -0.02 0.95 16 26 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 27 H 0.08 1.23 7.66 -2.39 -0.02 1.21 16 28 H 0.06 1.22 7.66 -2.39 -0.02 1.20 16 29 H 0.13 4.26 8.06 -2.91 -0.02 4.23 16 30 H 0.11 4.39 8.03 -2.91 -0.02 4.36 16 31 H 0.02 0.87 7.05 -2.39 -0.02 0.85 16 32 H 0.10 2.92 5.99 -2.38 -0.01 2.90 16 33 H -0.03 -2.03 6.37 -2.39 -0.02 -2.04 16 34 H 0.01 0.56 6.16 -2.39 -0.01 0.54 16 35 H 0.26 15.21 8.31 -92.71 -0.77 14.44 16 36 H 0.06 2.64 6.66 -2.38 -0.02 2.62 16 37 H 0.06 1.53 6.53 -2.39 -0.02 1.52 16 38 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 39 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 40 H 0.03 1.08 6.55 -2.39 -0.02 1.06 16 41 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 42 H 0.06 1.91 6.70 -2.39 -0.02 1.90 16 43 H 0.14 3.72 8.06 -2.91 -0.02 3.69 16 44 H 0.15 3.30 6.30 -2.91 -0.02 3.28 16 Total: -1.00 -68.34 347.58 3.25 -65.09 By element: Atomic # 1 Polarization: 16.52 SS G_CDS: 0.96 Total: 17.48 kcal Atomic # 6 Polarization: -40.64 SS G_CDS: 4.78 Total: -35.86 kcal Atomic # 7 Polarization: -79.95 SS G_CDS: -3.58 Total: -83.54 kcal Atomic # 8 Polarization: -9.72 SS G_CDS: -0.94 Total: -10.66 kcal Atomic # 14 Polarization: 45.46 SS G_CDS: 2.03 Total: 47.48 kcal Total: -68.34 3.25 -65.09 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299414703.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.461 kcal (2) G-P(sol) polarization free energy of solvation -68.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.086 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds