Wall clock time and date at job start Mon Mar 30 2020 02:26:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.39865 * 125.90000 * 2 1 4 4 C 1.35318 * 107.92133 * 179.97438 * 3 2 1 5 5 C 1.50701 * 126.12526 * 179.97438 * 4 3 2 6 6 C 1.53118 * 109.52399 * 214.99872 * 5 4 3 7 7 C 1.53037 * 109.31398 * 182.46238 * 6 5 4 8 8 N 1.46849 * 109.51913 * 59.16377 * 7 6 5 9 9 C 1.46902 * 110.99455 * 174.16299 * 8 7 6 10 10 H 1.08994 * 109.47619 * 59.08857 * 9 8 7 11 11 C 1.52996 * 109.47070 * 299.08384 * 9 8 7 12 12 C 1.53006 * 109.46706 * 179.08786 * 9 8 7 13 13 C 1.50699 * 109.47139 * 182.36109 * 12 9 8 14 14 H 1.08002 * 119.99653 * 5.59763 * 13 12 9 15 15 C 1.37875 * 120.00212 * 185.59041 * 13 12 9 16 16 N 1.31517 * 120.00077 * 179.97438 * 15 13 12 17 17 Si 1.86802 * 119.99725 * 0.02562 * 15 13 12 18 18 H 1.48495 * 109.47135 * 89.99976 * 17 15 13 19 19 H 1.48502 * 109.46656 * 209.99401 * 17 15 13 20 20 H 1.48497 * 109.47058 * 329.99452 * 17 15 13 21 21 C 1.46852 * 111.19750 * 298.25409 * 8 7 6 22 22 C 1.53034 * 109.51938 * 61.74667 * 21 8 7 23 23 N 1.34943 * 107.74635 * 0.22664 * 4 3 2 24 24 H 0.96995 * 126.04034 * 179.77433 * 23 4 3 25 25 N 1.30837 * 125.89534 * 179.97438 * 2 1 3 26 26 H 1.09001 * 109.47081 * 90.00268 * 1 2 3 27 27 H 1.08996 * 109.47258 * 210.00340 * 1 2 3 28 28 H 1.09002 * 109.46435 * 330.00230 * 1 2 3 29 29 H 1.08001 * 126.04030 * 359.97438 * 3 2 1 30 30 H 1.08996 * 109.57906 * 335.16383 * 5 4 3 31 31 H 1.09008 * 109.49835 * 62.50170 * 6 5 4 32 32 H 1.09002 * 109.50621 * 302.42588 * 6 5 4 33 33 H 1.09003 * 109.46157 * 179.17737 * 7 6 5 34 34 H 1.08993 * 109.46145 * 299.14868 * 7 6 5 35 35 H 1.08993 * 109.47757 * 300.00433 * 11 9 8 36 36 H 1.08998 * 109.46970 * 60.00275 * 11 9 8 37 37 H 1.09002 * 109.47251 * 180.02562 * 11 9 8 38 38 H 1.08997 * 109.47109 * 302.36624 * 12 9 8 39 39 H 1.09002 * 109.46950 * 62.36274 * 12 9 8 40 40 H 0.97001 * 119.99819 * 179.97438 * 16 15 13 41 41 H 1.09001 * 109.46015 * 181.76195 * 21 8 7 42 42 H 1.09002 * 109.45969 * 301.73222 * 21 8 7 43 43 H 1.08998 * 109.50639 * 60.76079 * 22 21 8 44 44 H 1.08997 * 109.50445 * 180.83975 * 22 21 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3272 1.1330 0.0000 4 6 3.6143 0.7153 0.0006 5 6 4.8351 1.5989 0.0002 6 6 5.9429 0.9407 -0.8268 7 6 7.2000 1.8119 -0.7733 8 7 7.6316 1.9653 0.6219 9 6 8.9127 2.6798 0.7009 10 1 8.8091 3.6635 0.2432 11 6 9.9878 1.8829 -0.0407 12 6 9.3176 2.8401 2.1678 13 6 10.6022 3.6235 2.2516 14 1 11.0341 4.0496 1.3581 15 6 11.2260 3.7965 3.4689 16 7 12.3474 4.4798 3.5420 17 14 10.4791 3.0591 5.0142 18 1 11.0124 1.6880 5.2161 19 1 10.8291 3.9035 6.1846 20 1 9.0023 2.9997 4.8705 21 6 6.6030 2.6388 1.4249 22 6 5.3282 1.7923 1.4370 23 7 3.6088 -0.6341 -0.0042 24 1 4.3908 -1.2080 -0.0080 25 7 2.2742 -1.0599 0.0005 26 1 -0.3633 0.0000 -1.0277 27 1 -0.3633 -0.8899 0.5139 28 1 -0.3632 0.8901 0.5138 29 1 1.9924 2.1598 -0.0004 30 1 4.5847 2.5677 -0.4318 31 1 5.6138 0.8398 -1.8611 32 1 6.1656 -0.0449 -0.4180 33 1 7.9949 1.3381 -1.3494 34 1 6.9805 2.7924 -1.1955 35 1 10.0916 0.8992 0.4171 36 1 9.6993 1.7687 -1.0856 37 1 10.9385 2.4128 0.0184 38 1 8.5322 3.3712 2.7055 39 1 9.4622 1.8563 2.6143 40 1 12.7860 4.6018 4.3985 41 1 6.9644 2.7658 2.4454 42 1 6.3864 3.6156 0.9923 43 1 5.5409 0.8204 1.8821 44 1 4.5600 2.2996 2.0207 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000299494590.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:28 Heat of formation + Delta-G solvation = 36.745955 kcal Electronic energy + Delta-G solvation = -21728.971192 eV Core-core repulsion = 18681.072120 eV Total energy + Delta-G solvation = -3047.899072 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.31844 -40.19535 -36.83116 -34.78175 -33.62910 -32.37674 -31.98984 -30.24840 -29.03656 -28.66146 -25.90956 -24.74693 -23.45058 -21.81414 -21.18949 -20.73899 -20.18783 -19.16184 -18.37403 -16.76712 -16.40920 -15.98554 -15.76655 -15.64128 -15.20672 -14.86488 -14.67505 -14.52772 -14.49845 -14.26004 -13.76578 -13.64599 -13.54323 -13.26962 -13.24844 -12.84713 -12.62103 -12.50368 -12.15888 -12.12553 -11.99164 -11.83209 -11.60018 -11.50082 -11.39588 -11.22393 -10.95979 -10.71870 -10.18493 -9.53487 -9.16022 -8.27678 -6.29667 0.92757 1.35727 1.36566 1.48366 1.82635 1.97768 2.36298 2.99425 3.08103 3.46834 3.71708 3.84563 3.88629 4.18341 4.21950 4.29774 4.36003 4.40789 4.49140 4.53692 4.62309 4.72552 4.73179 4.81290 4.86011 4.91416 4.94686 4.95691 5.02224 5.07766 5.11180 5.14208 5.18942 5.25865 5.28111 5.39202 5.41972 5.56854 5.68503 5.79177 6.17546 6.33279 6.38279 6.40765 6.76986 6.77522 7.33920 8.88787 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.030090 B = 0.003580 C = 0.003350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 930.313671 B = 7819.510149 C = 8356.876616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.065 3.935 3 C -0.286 4.286 4 C 0.110 3.890 5 C -0.020 4.020 6 C -0.104 4.104 7 C 0.051 3.949 8 N -0.540 5.540 9 C 0.102 3.898 10 H 0.019 0.981 11 C -0.124 4.124 12 C 0.001 3.999 13 C -0.518 4.518 14 H 0.037 0.963 15 C 0.007 3.993 16 N -0.951 5.951 17 Si 0.945 3.055 18 H -0.270 1.270 19 H -0.286 1.286 20 H -0.249 1.249 21 C 0.049 3.951 22 C -0.095 4.095 23 N -0.473 5.473 24 H 0.442 0.558 25 N -0.334 5.334 26 H 0.087 0.913 27 H 0.071 0.929 28 H 0.094 0.906 29 H 0.162 0.838 30 H 0.104 0.896 31 H 0.084 0.916 32 H 0.069 0.931 33 H 0.084 0.916 34 H 0.034 0.966 35 H 0.053 0.947 36 H 0.065 0.935 37 H 0.042 0.958 38 H 0.018 0.982 39 H 0.018 0.982 40 H 0.265 0.735 41 H 0.067 0.933 42 H 0.034 0.966 43 H 0.062 0.938 44 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.283 -8.068 -8.849 25.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.101 4.101 3 C -0.315 4.315 4 C -0.019 4.019 5 C -0.040 4.040 6 C -0.142 4.142 7 C -0.076 4.076 8 N -0.266 5.266 9 C -0.006 4.006 10 H 0.037 0.963 11 C -0.182 4.182 12 C -0.037 4.037 13 C -0.557 4.557 14 H 0.055 0.945 15 C -0.190 4.190 16 N -0.592 5.592 17 Si 0.769 3.231 18 H -0.195 1.195 19 H -0.212 1.212 20 H -0.173 1.173 21 C -0.079 4.079 22 C -0.134 4.134 23 N -0.182 5.182 24 H 0.288 0.712 25 N -0.158 5.158 26 H 0.106 0.894 27 H 0.090 0.910 28 H 0.113 0.887 29 H 0.179 0.821 30 H 0.122 0.878 31 H 0.103 0.897 32 H 0.088 0.912 33 H 0.102 0.898 34 H 0.052 0.948 35 H 0.072 0.928 36 H 0.084 0.916 37 H 0.061 0.939 38 H 0.036 0.964 39 H 0.036 0.964 40 H 0.074 0.926 41 H 0.085 0.915 42 H 0.052 0.948 43 H 0.081 0.919 44 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -22.085 -9.750 -8.551 25.611 hybrid contribution 0.898 1.425 0.582 1.782 sum -21.187 -8.325 -7.969 24.119 Atomic orbital electron populations 1.20296 0.84738 1.04121 1.03894 1.22894 0.98471 0.90532 0.98244 1.21440 0.90940 1.00652 1.18437 1.21179 0.96969 0.84750 0.99047 1.19970 0.89455 0.97628 0.96935 1.21607 0.93081 0.99130 1.00384 1.22168 0.97625 0.98878 0.88942 1.62012 1.02446 1.51038 1.11065 1.21325 0.88872 0.93849 0.96565 0.96266 1.21668 0.97644 0.99778 0.99101 1.19573 0.94667 0.95645 0.93789 1.21371 1.07475 1.32675 0.94139 0.94466 1.25902 0.95052 0.95426 1.02619 1.70057 1.19424 1.43171 1.26558 0.85730 0.80284 0.78505 0.78536 1.19538 1.21178 1.17291 1.22156 0.91710 0.95387 0.98608 1.21543 0.95688 1.00561 0.95558 1.46314 1.07062 1.05330 1.59446 0.71228 1.77236 0.87375 1.23724 1.27496 0.89414 0.90993 0.88728 0.82084 0.87767 0.89710 0.91250 0.89751 0.94795 0.92821 0.91572 0.93894 0.96364 0.96398 0.92621 0.91480 0.94778 0.91938 0.90119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.93 10.45 71.24 0.74 -0.18 16 2 C 0.06 1.32 7.22 43.10 0.31 1.63 16 3 C -0.29 -5.53 10.65 21.99 0.23 -5.30 16 4 C 0.11 2.16 5.92 41.41 0.25 2.40 16 5 C -0.02 -0.36 2.65 -11.46 -0.03 -0.39 16 6 C -0.10 -1.88 5.17 30.65 0.16 -1.72 16 7 C 0.05 1.20 5.24 86.33 0.45 1.65 16 8 N -0.54 -16.36 4.53 -871.11 -3.94 -20.30 16 9 C 0.10 3.88 2.13 44.92 0.10 3.97 16 10 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 11 C -0.12 -4.49 8.78 71.98 0.63 -3.85 16 12 C 0.00 0.04 3.24 29.85 0.10 0.14 16 13 C -0.52 -29.28 8.83 25.60 0.23 -29.05 16 14 H 0.04 2.31 7.34 -2.91 -0.02 2.28 16 15 C 0.01 0.38 5.47 84.65 0.46 0.85 16 16 N -0.95 -59.42 13.96 21.45 0.30 -59.12 16 17 Si 0.95 44.55 27.36 68.60 1.88 46.42 16 18 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 19 H -0.29 -13.25 7.11 99.48 0.71 -12.54 16 20 H -0.25 -10.94 6.71 99.48 0.67 -10.28 16 21 C 0.05 1.39 5.12 86.32 0.44 1.83 16 22 C -0.10 -2.07 5.36 30.65 0.16 -1.91 16 23 N -0.47 -9.81 7.13 -48.00 -0.34 -10.15 16 24 H 0.44 7.59 8.11 -213.33 -1.73 5.86 16 25 N -0.33 -8.04 12.70 -47.38 -0.60 -8.64 16 26 H 0.09 0.91 8.14 -2.39 -0.02 0.90 16 27 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 28 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 29 H 0.16 2.45 8.06 -2.91 -0.02 2.43 16 30 H 0.10 1.74 8.14 -2.39 -0.02 1.72 16 31 H 0.08 1.29 8.14 -2.38 -0.02 1.27 16 32 H 0.07 1.25 7.34 -2.39 -0.02 1.24 16 33 H 0.08 1.92 6.03 -2.39 -0.01 1.91 16 34 H 0.03 0.79 8.14 -2.39 -0.02 0.77 16 35 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 36 H 0.07 1.93 6.30 -2.39 -0.02 1.91 16 37 H 0.04 1.78 6.89 -2.39 -0.02 1.76 16 38 H 0.02 0.84 5.51 -2.39 -0.01 0.82 16 39 H 0.02 0.83 7.26 -2.39 -0.02 0.81 16 40 H 0.26 15.50 8.31 -92.71 -0.77 14.73 16 41 H 0.07 2.20 5.83 -2.39 -0.01 2.18 16 42 H 0.03 0.94 8.14 -2.39 -0.02 0.92 16 43 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 44 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 Total: -1.00 -67.99 339.35 0.74 -67.25 By element: Atomic # 1 Polarization: 15.26 SS G_CDS: -0.79 Total: 14.47 kcal Atomic # 6 Polarization: -34.16 SS G_CDS: 4.23 Total: -29.93 kcal Atomic # 7 Polarization: -93.63 SS G_CDS: -4.59 Total: -98.22 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 1.88 Total: 46.42 kcal Total: -67.99 0.74 -67.25 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299494590.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.995 kcal (2) G-P(sol) polarization free energy of solvation -67.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.249 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds