Wall clock time and date at job start Mon Mar 30 2020 02:10:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42898 * 109.46948 * 2 1 4 4 C 1.35905 * 117.00124 * 180.02562 * 3 2 1 5 5 C 1.38759 * 120.05377 * 359.97438 * 4 3 2 6 6 C 1.38123 * 119.94330 * 180.02562 * 5 4 3 7 7 C 1.38286 * 120.05322 * 0.02562 * 6 5 4 8 8 C 1.38242 * 120.11556 * 359.95532 * 7 6 5 9 9 C 1.50696 * 119.97063 * 180.02562 * 8 7 6 10 10 H 1.09004 * 109.47267 * 160.00076 * 9 8 7 11 11 C 1.53001 * 109.47264 * 279.99702 * 9 8 7 12 12 N 1.46901 * 109.47424 * 39.99923 * 9 8 7 13 13 C 1.46897 * 111.00055 * 154.99716 * 12 9 8 14 14 H 1.09004 * 109.47223 * 35.00305 * 13 12 9 15 15 C 1.52999 * 109.47615 * 275.00338 * 13 12 9 16 16 C 1.52998 * 109.47123 * 155.00115 * 13 12 9 17 17 C 1.50706 * 109.47348 * 295.00166 * 16 13 12 18 18 H 1.08000 * 119.99302 * 359.97438 * 17 16 13 19 19 C 1.37871 * 120.00436 * 179.72505 * 17 16 13 20 20 N 1.31515 * 119.99684 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 120.00405 * 180.02562 * 19 17 16 22 22 H 1.48496 * 109.46683 * 359.97438 * 21 19 17 23 23 H 1.48492 * 109.47426 * 119.99743 * 21 19 17 24 24 H 1.48501 * 109.46833 * 239.99986 * 21 19 17 25 25 C 1.38164 * 120.05485 * 0.27416 * 8 7 6 26 26 H 1.09002 * 109.47196 * 59.99980 * 1 2 3 27 27 H 1.08994 * 109.46942 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47053 * 300.00108 * 1 2 3 29 29 H 1.09000 * 109.47473 * 240.00542 * 2 1 3 30 30 H 1.09002 * 109.47196 * 120.00020 * 2 1 3 31 31 H 1.08005 * 120.02451 * 0.02562 * 5 4 3 32 32 H 1.07992 * 119.96847 * 180.02562 * 6 5 4 33 33 H 1.08004 * 119.94059 * 179.97438 * 7 6 5 34 34 H 1.09004 * 109.47476 * 179.97438 * 11 9 8 35 35 H 1.08998 * 109.47044 * 300.00657 * 11 9 8 36 36 H 1.09004 * 109.46674 * 60.00010 * 11 9 8 37 37 H 1.00896 * 111.00034 * 31.04707 * 12 9 8 38 38 H 1.08995 * 109.47105 * 59.99478 * 15 13 12 39 39 H 1.08998 * 109.47635 * 180.02562 * 15 13 12 40 40 H 1.09004 * 109.46798 * 300.00228 * 15 13 12 41 41 H 1.09001 * 109.47671 * 175.00375 * 16 13 12 42 42 H 1.08998 * 109.47454 * 55.00372 * 16 13 12 43 43 H 0.97004 * 120.00247 * 180.02562 * 20 19 17 44 44 H 1.07995 * 120.02798 * 179.73847 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3536 1.5254 -0.0005 5 6 4.2000 0.4258 -0.0005 6 6 5.5689 0.6095 -0.0005 7 6 6.0962 1.8879 0.0000 8 6 5.2551 2.9851 -0.0005 9 6 5.8331 4.3768 -0.0005 10 1 5.0808 5.0827 -0.3523 11 6 6.2596 4.7519 1.4202 12 7 7.0011 4.4219 -0.8904 13 6 7.2319 5.7849 -1.3872 14 1 6.9713 6.5039 -0.6104 15 6 6.3634 6.0315 -2.6225 16 6 8.7068 5.9490 -1.7598 17 6 9.5547 5.8277 -0.5198 18 1 9.0881 5.6516 0.4382 19 6 10.9262 5.9363 -0.6090 20 7 11.4946 6.1452 -1.7764 21 14 11.9772 5.7852 0.9278 22 1 11.1022 5.5531 2.1049 23 1 12.9158 4.6447 0.7756 24 1 12.7490 7.0385 1.1248 25 6 3.8850 2.8067 0.0044 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8934 -0.5137 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 3.7886 -0.5728 -0.0005 32 1 6.2280 -0.2460 -0.0009 33 1 7.1669 2.0295 0.0004 34 1 6.6782 5.7584 1.4201 35 1 5.3930 4.7184 2.0805 36 1 7.0120 4.0460 1.7720 37 1 6.8988 3.7711 -1.6545 38 1 5.3128 5.9146 -2.3571 39 1 6.5351 7.0427 -2.9914 40 1 6.6241 5.3126 -3.3992 41 1 8.8609 6.9293 -2.2107 42 1 8.9903 5.1733 -2.4711 43 1 12.4596 6.2213 -1.8394 44 1 3.2284 3.6641 0.0083 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000299719410.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:38 Heat of formation + Delta-G solvation = -47.372871 kcal Electronic energy + Delta-G solvation = -21403.961439 eV Core-core repulsion = 18320.121950 eV Total energy + Delta-G solvation = -3083.839489 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.19173 -39.43072 -37.80095 -35.14669 -33.78594 -32.87359 -31.05105 -30.01912 -29.54704 -28.74605 -25.36233 -24.91874 -23.50706 -23.37132 -21.29652 -21.06140 -18.84274 -18.30756 -17.13504 -17.01475 -16.95683 -16.56820 -15.98048 -15.92086 -15.30036 -14.65250 -14.48243 -14.31293 -14.24695 -14.01542 -13.60174 -13.55921 -13.37451 -13.19757 -13.04363 -12.95803 -12.70113 -12.58160 -12.51378 -12.33151 -12.24150 -12.06339 -11.83674 -11.59590 -11.46656 -11.10984 -11.04098 -10.45643 -9.78684 -9.11613 -9.01048 -8.05938 -6.09680 0.35538 0.52695 1.42459 1.43561 1.56380 2.25469 2.50087 2.81224 3.25958 3.43016 3.74203 3.89640 4.07243 4.12144 4.20642 4.23886 4.31203 4.39137 4.45183 4.48218 4.55069 4.55680 4.63001 4.67358 4.84488 4.88661 4.95183 5.01492 5.04100 5.13297 5.21177 5.23934 5.29037 5.36463 5.42879 5.54390 5.56529 5.66502 5.78974 5.84935 5.94638 6.38266 6.49620 6.53630 6.74071 7.04859 7.55580 9.06651 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.027566 B = 0.003559 C = 0.003373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1015.503627 B = 7865.044129 C = 8298.908753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.045 3.955 3 O -0.334 6.334 4 C 0.119 3.881 5 C -0.210 4.210 6 C -0.082 4.082 7 C -0.149 4.149 8 C -0.048 4.048 9 C 0.128 3.872 10 H 0.052 0.948 11 C -0.128 4.128 12 N -0.668 5.668 13 C 0.100 3.900 14 H 0.062 0.938 15 C -0.170 4.170 16 C 0.038 3.962 17 C -0.490 4.490 18 H 0.060 0.940 19 C -0.009 4.009 20 N -0.943 5.943 21 Si 0.955 3.045 22 H -0.264 1.264 23 H -0.285 1.285 24 H -0.284 1.284 25 C -0.159 4.159 26 H 0.061 0.939 27 H 0.100 0.900 28 H 0.062 0.938 29 H 0.070 0.930 30 H 0.071 0.929 31 H 0.149 0.851 32 H 0.145 0.855 33 H 0.122 0.878 34 H 0.047 0.953 35 H 0.068 0.932 36 H 0.049 0.951 37 H 0.336 0.664 38 H 0.061 0.939 39 H 0.057 0.943 40 H 0.050 0.950 41 H -0.009 1.009 42 H -0.010 1.010 43 H 0.257 0.743 44 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.227 -13.260 4.181 25.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.030 4.030 3 O -0.249 6.249 4 C 0.073 3.927 5 C -0.229 4.229 6 C -0.100 4.100 7 C -0.168 4.168 8 C -0.048 4.048 9 C 0.019 3.981 10 H 0.070 0.930 11 C -0.186 4.186 12 N -0.299 5.299 13 C -0.010 4.010 14 H 0.080 0.920 15 C -0.229 4.229 16 C 0.001 3.999 17 C -0.528 4.528 18 H 0.078 0.922 19 C -0.204 4.204 20 N -0.586 5.586 21 Si 0.781 3.219 22 H -0.189 1.189 23 H -0.211 1.211 24 H -0.210 1.210 25 C -0.179 4.179 26 H 0.080 0.920 27 H 0.119 0.881 28 H 0.081 0.919 29 H 0.088 0.912 30 H 0.089 0.911 31 H 0.167 0.833 32 H 0.162 0.838 33 H 0.140 0.860 34 H 0.066 0.934 35 H 0.087 0.913 36 H 0.068 0.932 37 H 0.154 0.846 38 H 0.080 0.920 39 H 0.076 0.924 40 H 0.069 0.931 41 H 0.009 0.991 42 H 0.008 0.992 43 H 0.066 0.934 44 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -20.788 -13.037 4.641 24.973 hybrid contribution 0.500 0.099 -0.247 0.566 sum -20.288 -12.938 4.395 24.460 Atomic orbital electron populations 1.21807 0.91542 1.04168 1.03111 1.23062 0.96849 0.80804 1.02272 1.86046 1.18712 1.31342 1.88773 1.19000 0.82710 0.94112 0.96831 1.21459 0.94111 0.98628 1.08661 1.21214 0.94836 0.97339 0.96585 1.21107 1.00402 0.92329 1.02917 1.19722 0.92300 0.95205 0.97585 1.20396 0.90814 0.92091 0.94809 0.93017 1.21730 1.00885 1.01173 0.94819 1.60549 1.39241 1.07199 1.22929 1.21488 0.95403 0.89447 0.94632 0.92017 1.22425 0.99671 1.02046 0.98803 1.18988 0.91399 0.94092 0.95437 1.21528 0.91287 1.45030 0.94981 0.92177 1.25859 0.99813 0.96180 0.98589 1.70109 1.10215 1.52839 1.25406 0.85543 0.78688 0.77256 0.80396 1.18860 1.21075 1.21002 1.20332 0.94323 0.95541 1.07666 0.91995 0.88102 0.91906 0.91184 0.91080 0.83326 0.83759 0.86020 0.93367 0.91349 0.93192 0.84580 0.91967 0.92425 0.93082 0.99076 0.99200 0.93438 0.85215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.53 10.28 71.98 0.74 -0.79 16 2 C 0.04 0.63 5.46 71.98 0.39 1.02 16 3 O -0.33 -7.39 10.14 -92.49 -0.94 -8.33 16 4 C 0.12 2.87 6.69 22.51 0.15 3.02 16 5 C -0.21 -4.45 9.04 22.37 0.20 -4.25 16 6 C -0.08 -1.88 10.04 22.25 0.22 -1.66 16 7 C -0.15 -4.18 9.00 22.28 0.20 -3.98 16 8 C -0.05 -1.35 4.71 -19.88 -0.09 -1.44 16 9 C 0.13 3.98 2.63 44.17 0.12 4.10 16 10 H 0.05 1.53 6.98 -2.38 -0.02 1.51 16 11 C -0.13 -4.04 9.38 71.98 0.67 -3.37 16 12 N -0.67 -24.73 5.15 -473.31 -2.44 -27.17 16 13 C 0.10 4.04 2.34 44.92 0.11 4.15 16 14 H 0.06 2.54 7.11 -2.38 -0.02 2.52 16 15 C -0.17 -5.72 9.15 71.98 0.66 -5.06 16 16 C 0.04 2.01 4.65 29.85 0.14 2.15 16 17 C -0.49 -27.90 8.84 25.60 0.23 -27.67 16 18 H 0.06 3.37 7.74 -2.91 -0.02 3.34 16 19 C -0.01 -0.53 5.46 84.65 0.46 -0.07 16 20 N -0.94 -58.69 13.29 21.45 0.28 -58.40 16 21 Si 0.95 46.01 29.54 68.60 2.03 48.04 16 22 H -0.26 -12.23 7.11 99.48 0.71 -11.53 16 23 H -0.28 -13.51 7.11 99.48 0.71 -12.80 16 24 H -0.28 -13.39 7.11 99.48 0.71 -12.68 16 25 C -0.16 -4.20 9.61 22.37 0.21 -3.98 16 26 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 27 H 0.10 0.55 8.14 -2.39 -0.02 0.53 16 28 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 29 H 0.07 0.85 7.66 -2.39 -0.02 0.83 16 30 H 0.07 0.84 7.66 -2.39 -0.02 0.82 16 31 H 0.15 2.27 6.30 -2.91 -0.02 2.25 16 32 H 0.14 2.62 8.06 -2.91 -0.02 2.60 16 33 H 0.12 3.81 7.71 -2.91 -0.02 3.79 16 34 H 0.05 1.64 7.43 -2.39 -0.02 1.63 16 35 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 36 H 0.05 1.69 8.14 -2.38 -0.02 1.68 16 37 H 0.34 12.04 7.73 -89.70 -0.69 11.34 16 38 H 0.06 1.78 7.43 -2.39 -0.02 1.77 16 39 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 40 H 0.05 1.70 8.13 -2.38 -0.02 1.68 16 41 H -0.01 -0.51 8.14 -2.39 -0.02 -0.53 16 42 H -0.01 -0.60 8.14 -2.39 -0.02 -0.62 16 43 H 0.26 15.14 8.31 -92.71 -0.77 14.37 16 44 H 0.13 3.20 8.04 -2.91 -0.02 3.17 16 Total: -1.00 -66.63 358.13 3.61 -63.02 By element: Atomic # 1 Polarization: 20.43 SS G_CDS: 0.27 Total: 20.70 kcal Atomic # 6 Polarization: -42.26 SS G_CDS: 4.41 Total: -37.85 kcal Atomic # 7 Polarization: -83.42 SS G_CDS: -2.15 Total: -85.57 kcal Atomic # 8 Polarization: -7.39 SS G_CDS: -0.94 Total: -8.33 kcal Atomic # 14 Polarization: 46.01 SS G_CDS: 2.03 Total: 48.04 kcal Total: -66.63 3.61 -63.02 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299719410.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.643 kcal (2) G-P(sol) polarization free energy of solvation -66.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.016 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds